mRNA_H-elongata_contig16272.3978.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 234 bits (596), Expect = 1.470e-68 Identity = 115/146 (78.77%), Postives = 129/146 (88.36%), Query Frame = 1
Query: 1 MQAEVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQK 438
MQAE N ++ LDIEWEIS+AGAP NPPATIQLAAGK VVIFHVLHGQRSVPA+LPD L +LLED KLTKTGVGIKGDCTRL++ YGVEVA A DLRSLAVERKVE+GLRRGLADLCVHLLG +LPK+ TVR+S+WN + LS +QK
Sbjct: 245 MQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 3.940e-21 Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 10 EVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVI-FHVLHG-QRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNT 414
++ GNV+GLD EWE S AG NP +T+QL+ F + G +++ ++ P L NLLE+ + K GV I D T L YG+EVA DLR+ A + VE R LA + LLG +LPK+ +R SRW++
Sbjct: 109 QLQGNVLGLDCEWEPSLAGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETP-SRSLAGMASSLLGRQLPKDPVIRSSRWSS 244
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 5.560e-21 Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 10 EVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVI-FHVLHG-QRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNT 414
++ GNV+GLD EWE S G NP +T+QL+ F + G +++ ++ P L NLLE+ + K GV I D T L YG+EVA DLR+ A + VE R LA + LLG +LPK+ +R+SRW++
Sbjct: 417 QLQGNVLGLDCEWEPSLGGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETP-SRSLAGMASSLLGRQLPKDPVIRLSRWSS 552
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.210e-16 Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 19 GNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLH---GQRSVPADLPDQLANLLEDDKLTK-TGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 435
G+V+GLD EWE + GA NP +T+QL+ LH + + + +P L +LLE+ + GV + D + L YGV+VA D+R+ A E VE R LA + L+G LPK+ T+R+SRW+ L+ EQ
Sbjct: 152 GDVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 3.900e-16 Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 19 GNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVV-IFHVLHG-QRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 435
G+V+G+D EWE G+ T+QLA +FH+ G +R+ P+ L LL D +TK GV +KGD +RL YGVE DLRS A V++ R LA + LG L K +VR SRW+ +L++ Q
Sbjct: 87 GHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A1E5VPQ2_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPQ2_9POAL) HSP 1 Score: 79.3 bits (194), Expect = 1.810e-14 Identity = 46/120 (38.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query: 79 PPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLR-RGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 435
P A +QL G+ ++F +L +PD L L DD++T GVG+ D +L YG+EVARA DLR LAV L GL L ++G ++ K VR+S W+ +LSK Q
Sbjct: 252 PVAVLQLCVGRRCLVFQILRADY-----VPDALVGFLADDRITFVGVGVHNDAAKLREGYGLEVARAVDLRRLAVVELGNPALHGAGLQALVWEVMGLQMEKPHHVRVSAWDARRLSKAQ 366
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A7S0LL15_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LL15_9EUKA) HSP 1 Score: 75.9 bits (185), Expect = 2.160e-13 Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1
Query: 28 IGLDIEWEISS-AGAPLNPPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQKA 441
+G DIEW+++ AG AT+QLA ++ Q S P LA ++ D ++ KTGVGI+ D +L+ YGV A DL +A + LADL +LG RLPK +R+S W +LS EQ A
Sbjct: 169 VGFDIEWKVTFVAGETPRKVATLQLAHESSCLVL-----QLSAMPHFPANLAVIMGDSRIIKTGVGIRNDALKLARDYGVRCAGILDLGRVAQVVLPDGAAPWSLADLSERVLGRRLPKAPQLRLSNWE-ARLSPEQVA 301
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: UPI00081150E8 (exonuclease 3'-5' domain-containing protein 2-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081150E8) HSP 1 Score: 72.0 bits (175), Expect = 1.200e-12 Identity = 52/144 (36.11%), Postives = 72/144 (50.00%), Query Frame = 1
Query: 10 EVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLA--VERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 435
++ V+G D EW + G P A +QL++ K + L + +P DL D LLEDDK+ K GVG + D +L+ YGV VA DLR LA V +K E GLA + LL L K + S W L+++Q
Sbjct: 2 QIXYKVLGFDCEWV--TVGGKRRPVALLQLSSQKGLCALFRLCNLQQIPKDLRD----LLEDDKVIKVGVGTQDDAHKLAYDYGVGVASTLDLRYLAALVNQKPE-----GLAKMAKSLLDVHLDKHWRLSCSDWEAKVLNEKQ 134
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A0A0L9B9_CUCSA (3'-5' exonuclease domain-containing protein n=4 Tax=Cucumis TaxID=3655 RepID=A0A0A0L9B9_CUCSA) HSP 1 Score: 73.2 bits (178), Expect = 1.570e-12 Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 1
Query: 28 IGLDIEWEIS-SAGAPLNPPATIQLAA-GKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 435
IG DIEW S G P A +QL + H++H + +P L LLEDD L+K GVGI D +++ Y V V ++ LA ++ V + GL L L+ L K +R+ W LSK+Q
Sbjct: 149 IGFDIEWRPSFKRGVPPGKAAVMQLCLENSECHVMHIIH------SGIPQSLQALLEDDTLSKAGVGIASDASKVFKEYNVSVKPLNEISDLANQKLAGVPKKWGLRALTETLISKELQKPDRIRLGNWEVAVLSKDQ 280
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A5J9VHV3_9POAL (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9VHV3_9POAL) HSP 1 Score: 70.9 bits (172), Expect = 2.450e-12 Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query: 85 ATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRR-GLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 435
A +QL G+ ++F + +PD L + L DD+ GVG+ D +L YG+EVARA DLR LA + LRR GL L ++G ++ K VR+S W+ +LS+ Q
Sbjct: 57 AVLQLCVGRRCLVFQIFRADY-----VPDALFDFLADDRFYFVGVGVHDDAAKLRAQYGLEVARAKDLRGLAAYMFGKPELRRAGLHTLAWEVMGVKMHKPYHVRVSSWDARRLSQAQ 169 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16272.3978.1 >prot_H-elongata_contig16272.3978.1 ID=prot_H-elongata_contig16272.3978.1|Name=mRNA_H-elongata_contig16272.3978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MQAEVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLHGQRSback to top mRNA from alignment at H-elongata_contig16272:2352..2795+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16272.3978.1 ID=mRNA_H-elongata_contig16272.3978.1|Name=mRNA_H-elongata_contig16272.3978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at H-elongata_contig16272:2352..2795+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16272:2352..2795+ >mRNA_H-elongata_contig16272.3978.1 ID=mRNA_H-elongata_contig16272.3978.1|Name=mRNA_H-elongata_contig16272.3978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig16272:2352..2795+ (Himanthalia elongata Himel1 dioecious)back to top |