mRNA_H-elongata_contig16272.3977.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.830e-42 Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = 1
Query: 304 DEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVW 630
+ DV LLP+Y++ESFPF LTRKSAIHR V+A+V DNLMHAKGF A SE LQQAH + FH E KYYSML+ RR EQL +G ED FGSFEDADGYNGFSPS YLS VW
Sbjct: 6 NSDVLALLPLYVQESFPFFLTRKSAIHRDVVAEVADNLMHAKGFSASSEALQQAHLYRFHSMELKYYSMLLWRREEQLDAGVEDEFGSFEDADGYNGFSPSEHYLSTVW 114
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE) HSP 1 Score: 110 bits (274), Expect = 9.910e-25 Identity = 76/228 (33.33%), Postives = 106/228 (46.49%), Query Frame = 1
Query: 7 PPNPTMLKTI---RVGDHNLRTVFVWLPDLTH---PCGVPGGRLPCPRCKTNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKA--ISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGS----------GAEDNFGSFEDADGYNGFSPSAPYLSMVWSR 636
PP P++ ++ V L+ VFVW+P+ C +PCP C + GW +RR L C L+G Y C C + N K + F+ WD DV + ++ + FPFVLTRK+AI RS+I + D+L+ KGF A S+ LQ A+ T+ Y S L +RR QL G F DA G+N PSA YL +W +
Sbjct: 42 PPLPSLQQSAGIPSVEPFYLKKVFVWVPEYIWNEIDC------IPCPHC--GERGQPDGWNTD-ARRVFLEQDVCYLIGYRYYCKRCTDANAMKNSEDRTTATFKAWDPDVLARMDDFVSKEFPFVLTRKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVS-LANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLGDIWHK 259
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE) HSP 1 Score: 105 bits (263), Expect = 3.310e-24 Identity = 51/71 (71.83%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 418 MHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVW 630
MHAKGF A SE LQQAH + FH E KYYSML+ RR EQL G +D FGSFEDADGYNGFSPS YLS VW
Sbjct: 1 MHAKGFSASSEALQQAHLYRFHSMELKYYSMLLWRREEQLDGGVQDEFGSFEDADGYNGFSPSEHYLSTVW 71
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.500e-23 Identity = 65/208 (31.25%), Postives = 100/208 (48.08%), Query Frame = 1
Query: 40 VGDHNLRTVFVWLPDLTHPCGVPGGRLPCPRCKTNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPK--AISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQ-------LGSGAEDNFGSFEDADGYNGFSPSAPYLSMVWSR 636
+G L+ VFVW+P+ +PCP C N + GW + RR L D C L+G Y+C C E N+ +P+ + F WD V + Y+ + FPFVLT+K+AI +SV+ + D+L+ GF A S+ L + H + + + Y L +R + + G F S D G++ PSA YL +W +
Sbjct: 30 LGPFYLKKVFVWVPEYLWD---EIEYIPCPHC--NKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTY-HARYFNQLRSYVSLANRCVSRHKGMWPNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHK 230
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A8H7QM51_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7QM51_9FUNG) HSP 1 Score: 74.3 bits (181), Expect = 7.810e-12 Identity = 56/199 (28.14%), Postives = 83/199 (41.71%), Query Frame = 1
Query: 64 VFVWLPDLTHPCGVPGGRLPCPRCKTNHKV----IIKGWTQKGSRRGVLR-DSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKY---YSMLVHRRAEQLGSGAE-DNFGSFEDADGYNGFSPSAPYLSMVWS 633
VF+W P + CP C N V I G+T+ R ++ C L+ FY CN C + G D ++ R LPI + FP LT++S I R + + + + G S +LQ+ H + + +Y Y V + + F F D DGYNG+ PSA YLS V++
Sbjct: 208 VFLWFPHFLFYNN--NQKFKCPECAKNDSVPRFMISDGYTKSPLARRIIDIKDCFYLMSCFYKCNKC-----------NCRIIGTDTELIRKLPIIAQTEFPAFLTKRSGISRDLADLMRPLIQSSTGPLRLSNILQELHLKRYDTLQFQYLANYKYRVDNTSSLISLPVPAPEFSKFNDKDGYNGYYPSANYLSFVYT 393
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A8H7UPD2_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7UPD2_9FUNG) HSP 1 Score: 73.9 bits (180), Expect = 8.700e-12 Identity = 56/199 (28.14%), Postives = 83/199 (41.71%), Query Frame = 1
Query: 64 VFVWLPDLTHPCGVPGGRLPCPRCKTNHKV----IIKGWTQKGSRRGVLR-DSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKY---YSMLVHRRAEQLGSGAE-DNFGSFEDADGYNGFSPSAPYLSMVWS 633
VF+W P + CP C N V I G+T+ R ++ C L+ FY CN C + G D ++ R LPI + FP LT++S I R + + + + G S +LQ+ H + + +Y Y V + + F F D DGYNG+ PSA YLS V++
Sbjct: 199 VFLWFPHFLFYNN--NQKFKCPECAKNDSVPRFMISDGYTKSPLARRIIDIKDCFYLMSCFYKCNKC-----------NCRIIGTDTELIRQLPIIAQTEFPAFLTKRSGISRDLADLMRPLIQSSTGPLRLSNILQELHLKRYDTLQFQYLVNYKYRVDNSSSLISLQIPAPEFSKFNDKDGYNGYYPSANYLSFVYT 384
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A8H7R9E4_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7R9E4_9FUNG) HSP 1 Score: 70.1 bits (170), Expect = 1.840e-10 Identity = 49/177 (27.68%), Postives = 82/177 (46.33%), Query Frame = 1
Query: 118 LPCPRCKTNHKVIIKGWTQKG-SRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAE-----QLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVW 630
L CP C+ K+ +KG+ +K +RR + + C L+ Y C + K + F G + + R LP++++ FP VL+ +S + + + + H G S+VL+ H + + +YY+ L H L S F F+D YNG+ PSA Y+S V+
Sbjct: 262 LTCPTCEA--KIGVKGFNKKPIARRIIDLNDCFYLMTTRYKC---------RKKDVKHTFDGCNPALIRQLPLHLQAEFPVVLSHRSGLSKMLFKLMRPLFQHGIGPHRMSKVLRVMHTEKYDELQLQYYTTLDHDAQSPSVLSMLQSRQYPEFSQFKDKMQYNGYVPSANYISYVY 427
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A0C2XZE5_HEBCY (Uncharacterized protein n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C2XZE5_HEBCY) HSP 1 Score: 70.1 bits (170), Expect = 2.250e-10 Identity = 50/201 (24.88%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 67 FVWLPDLTHPCGVPGGRLPCPRCK---------TNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLV--HRRAEQLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVWSR 636
F+WLP L ++PCP CK + + + GW + RR V + C + G Y CN H + K FQ W + +LP + F F LT + + ++A + + G SE+++ H + L + +Y M+ H + + F S+ D +GY G++PS PY +
Sbjct: 397 FIWLPHLFV-------KIPCPSCKKAGRTRADGSTPMLYLLGWP-RAPRRVVDIEFCVYIFGYRYNCN----HEDCKET-----FQSWSSAILNVLPRPLAAQFTFHLTFRCGLTDRLVALLRSSFQRGLGPTPFSEMIRNFHVRYYELLQIQYLEMVKVRHYGSSSMFLAKHVRFSSWNDRNGYAGYTPSGPYFRAFYDN 580
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A166K076_9AGAM (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166K076_9AGAM) HSP 1 Score: 68.2 bits (165), Expect = 9.830e-10 Identity = 44/162 (27.16%), Postives = 69/162 (42.59%), Query Frame = 1
Query: 139 TNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGS--GAEDNFGSFEDADGYNGFSPSAPYL 618
T + + KGW + RR V C ++G Y+C C +Q W + +LP + F LT +S + SV+A + + H G +E+++ H + +Y M+ R + G FGSF D +GY GF+PSA Y
Sbjct: 8 TANMLWAKGWA-RAPRRVVDLAECIYIIGYRYLCGQCKSS-----------YQSWSPSLLSVLPRLLSMEFTHHLTYRSGLTDSVVALMRTSFQHGIGPGPFAEIIRTNHYRRYDHLHLQYLEMVYARSTSAMARLMGKSSPFGSFNDREGYAGFTPSAQYF 157
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A1C7LQI6_GRIFR (3'-5' exonuclease domain-containing protein n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LQI6_GRIFR) HSP 1 Score: 66.6 bits (161), Expect = 3.200e-9 Identity = 54/199 (27.14%), Postives = 82/199 (41.21%), Query Frame = 1
Query: 67 FVWLPDLTHPCGVPGGRLPCPRCKTNHKVI---------IKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGSGAED--NFGSFEDADGYNGFSPSAPYLSMVW 630
FVWLP V GR+PCP C + +V GW+ K RR V + C ++G Y C H E K +Q W + LP + F LT ++ I ++A + G +++++ H + +Y M+ R+ FGSF+D DGY G++PSA Y V+
Sbjct: 305 FVWLPH------VLVGRIPCPNCVSASRVSKGAQPVYLRCHGWS-KAPRRVVDLERCIWIIGYRYYC----PHPECKKS-----YQSWSPALLAALPRALSLDFDHHLTYRNGITEPLMAFMRTLYHRGVGPVPLAQIIRSFHIRYYERLHLQYVEMVYARQNSAFAHLLPKFKAFGSFDDRDGYAGYTPSARYFRDVY 487 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16272.3977.1 >prot_H-elongata_contig16272.3977.1 ID=prot_H-elongata_contig16272.3977.1|Name=mRNA_H-elongata_contig16272.3977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp MLKTIRVGDHNLRTVFVWLPDLTHPCGVPGGRLPCPRCKTNHKVIIKGWTback to top mRNA from alignment at H-elongata_contig16272:434..1229+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16272.3977.1 ID=mRNA_H-elongata_contig16272.3977.1|Name=mRNA_H-elongata_contig16272.3977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=796bp|location=Sequence derived from alignment at H-elongata_contig16272:434..1229+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16272:434..1229+ >mRNA_H-elongata_contig16272.3977.1 ID=mRNA_H-elongata_contig16272.3977.1|Name=mRNA_H-elongata_contig16272.3977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig16272:434..1229+ (Himanthalia elongata Himel1 dioecious)back to top |