mRNA_H-elongata_contig162478.3967.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: D7G3R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R1_ECTSI) HSP 1 Score: 180 bits (456), Expect = 2.670e-50 Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 1
Query: 46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSPQ 348
REDFRPFAPSVL EEA WFEGLPPDGSPYMSLTAPAKPGVA+ VPAVCHVD SSRLQTV E+ +PLYHRLI+AF+ +TGVPMVLNTSFNVMGEPIV+SPQ
Sbjct: 657 REDFRPFAPSVLAEEAEDWFEGLPPDGSPYMSLTAPAKPGVAERVPAVCHVDWSSRLQTVTEESSPLYHRLITAFFKMTGVPMVLNTSFNVMGEPIVDSPQ 757
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A835ZBM7_9STRA (Carbamoyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM7_9STRA) HSP 1 Score: 167 bits (423), Expect = 4.140e-48 Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 1
Query: 1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSPQ 348
+PR + N V REDFRPFAPSVLEE AG WF+GL DGSPYMSLT PAKPG + +PAVCHVDGSSR+QTV++ NPLYHRLISAF+ TGVPMVLNTSFN+ GEPIV+SP+
Sbjct: 155 DPRDKDMVNRINLKVKMREDFRPFAPSVLEEFAGEWFDGLTGDGSPYMSLTVPAKPGKREQIPAVCHVDGSSRIQTVQQAANPLYHRLISAFHRATGVPMVLNTSFNIKGEPIVDSPE 272
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S0JFX1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JFX1_9EUKA) HSP 1 Score: 137 bits (346), Expect = 4.480e-39 Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query: 46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSP 345
RE +RP APSVL E A WF+G+P GSPYMS TA AK + +++PAV HVDGS+RLQTV PLYH LISAFY+L+GVPMVLNTSFN+ GEPIV SP
Sbjct: 33 REQWRPLAPSVLAERADEWFDGVPDGGSPYMSFTAYAKEHMREAIPAVVHVDGSARLQTVASSTAPLYHALISAFYALSGVPMVLNTSFNLAGEPIVESP 132
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A0G4FRZ2_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRZ2_VITBC) HSP 1 Score: 141 bits (356), Expect = 9.800e-37 Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query: 46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSP 345
RE FRPFAPSV+ EEA GWFE LP GSPYMS+TA + VPAVCHVDG++RLQTVRE D PL++RL+ F+ LTG+PMV+NTSFN+ GEPIV P
Sbjct: 602 REAFRPFAPSVIAEEADGWFEDLPECGSPYMSITAAVREERRGLVPAVCHVDGTARLQTVRESDEPLFYRLLQQFFKLTGIPMVVNTSFNIKGEPIVEEP 701
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S3TJZ8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TJZ8_EMIHU) HSP 1 Score: 129 bits (325), Expect = 1.880e-34 Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSP 345
RE FRPFAPSVL E AG WFEG+PP GSPYMS P K D++PAVCHVDGS+RLQTV + +P + LI+AF++LTGVP+VLNTSFN EPIV P
Sbjct: 110 REPFRPFAPSVLAEHAGDWFEGVPPSGSPYMSFALPCKR--RDAIPAVCHVDGSARLQTVGGEADPRWRALIAAFFALTGVPLVLNTSFNTRPAEPIVEGP 208
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S4WGL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WGL8_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.350e-32 Identity = 67/105 (63.81%), Postives = 74/105 (70.48%), Query Frame = 1
Query: 46 REDFRPFAPSVLEEEAGGWFE----GLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSP 345
RE FRPFAPS L EEA WF+ + SPYMS+TA K +PAV HVDGSSRLQTV K PLYHRLISAF+ LTGVPMVLNTSFN + GEPIV +P
Sbjct: 91 RESFRPFAPSCLAEEASNWFDLGDNDFNDNVSPYMSITANVKESKRGQIPAVTHVDGSSRLQTVTAKAEPLYHRLISAFFDLTGVPMVLNTSFNTLKGEPIVETP 195
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A2D5ZSA0_9BACT (Carbam_trans_C domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2D5ZSA0_9BACT) HSP 1 Score: 122 bits (306), Expect = 2.260e-32 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSPQ 348
+PR ++ N A V RE FRPFAP+V+EE A +FE + P SP+M P + D +PAV H+DGS+RLQT+ ++D P +HRLISAF LTG P+VLNTSFNV GEPIV +P+
Sbjct: 93 DPRDASMKNHINARVKHREGFRPFAPAVIEERASDYFEVVGP--SPFMLEICPVRADKRDEIPAVTHIDGSARLQTITDEDTPHFHRLISAFDELTGTPVVLNTSFNVRGEPIVCTPE 208
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S2KMJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KMJ5_9STRA) HSP 1 Score: 122 bits (306), Expect = 6.580e-32 Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSPQ 348
RE FRPFAPSVL E A WF + SPYMS+T + A +P+V H+D SSRLQTV E+D PLYH+LISAF+ TGVP+VLNTSFN + GEPIV +P+
Sbjct: 34 RESFRPFAPSVLAEHADEWFVDTADNVSPYMSMTTLVRGEKASEIPSVTHIDRSSRLQTVTEEDEPLYHKLISAFHEATGVPLVLNTSFNTLKGEPIVETPE 135
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7C8ALU7_9BACT (Carbamoyltransferase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8ALU7_9BACT) HSP 1 Score: 119 bits (299), Expect = 7.710e-32 Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSP 345
+P ++ +V RE+FRPFAPSVLEE+AG +F G SP+M P G D++PAV H DG++R+QTV + +P Y+RLI AF GVPMVLNTSFNVMGEPIVNSP
Sbjct: 47 DPTRPEMKDLINTYVKHREEFRPFAPSVLEEKAGEYFAGCVQ--SPFMLFVYPVVRGKRDTIPAVTHADGTARVQTVSREVHPRYYRLIEAFEKRRGVPMVLNTSFNVMGEPIVNSP 161
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: B8BQS2_THAPS (Carbamoyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQS2_THAPS) HSP 1 Score: 122 bits (306), Expect = 1.250e-31 Identity = 68/125 (54.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFE------GLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSPQ 348
+PR FV RE FRPFAPS L EEA WF+ + SPYMS+TA K D +PAV HVDGSSRLQTV + P Y+RLISAFY TGVPMVLNTSFN + EPIV +P+
Sbjct: 158 DPRKKGLVRFINEFVKKRESFRPFAPSALAEEASNWFDLGEYAAAADNNVSPYMSITAQVKESKRDLIPAVTHVDGSSRLQTVTPEAEPFYYRLISAFYKATGVPMVLNTSFNTLKSEPIVETPR 282 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig162478.3967.1 >prot_H-elongata_contig162478.3967.1 ID=prot_H-elongata_contig162478.3967.1|Name=mRNA_H-elongata_contig162478.3967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MRGAFVREDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSback to top mRNA from alignment at H-elongata_contig162478:288..1097+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig162478.3967.1 ID=mRNA_H-elongata_contig162478.3967.1|Name=mRNA_H-elongata_contig162478.3967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=810bp|location=Sequence derived from alignment at H-elongata_contig162478:288..1097+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig162478:288..1097+ >mRNA_H-elongata_contig162478.3967.1 ID=mRNA_H-elongata_contig162478.3967.1|Name=mRNA_H-elongata_contig162478.3967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig162478:288..1097+ (Himanthalia elongata Himel1 dioecious)back to top |