mRNA_H-elongata_contig162478.3967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162478.3967.1
Unique NamemRNA_H-elongata_contig162478.3967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: D7G3R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R1_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 2.670e-50
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 1
Query:   46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSPQ 348
            REDFRPFAPSVL EEA  WFEGLPPDGSPYMSLTAPAKPGVA+ VPAVCHVD SSRLQTV E+ +PLYHRLI+AF+ +TGVPMVLNTSFNVMGEPIV+SPQ
Sbjct:  657 REDFRPFAPSVLAEEAEDWFEGLPPDGSPYMSLTAPAKPGVAERVPAVCHVDWSSRLQTVTEESSPLYHRLITAFFKMTGVPMVLNTSFNVMGEPIVDSPQ 757          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A835ZBM7_9STRA (Carbamoyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM7_9STRA)

HSP 1 Score: 167 bits (423), Expect = 4.140e-48
Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSPQ 348
            +PR  +  N     V  REDFRPFAPSVLEE AG WF+GL  DGSPYMSLT PAKPG  + +PAVCHVDGSSR+QTV++  NPLYHRLISAF+  TGVPMVLNTSFN+ GEPIV+SP+
Sbjct:  155 DPRDKDMVNRINLKVKMREDFRPFAPSVLEEFAGEWFDGLTGDGSPYMSLTVPAKPGKREQIPAVCHVDGSSRIQTVQQAANPLYHRLISAFHRATGVPMVLNTSFNIKGEPIVDSPE 272          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S0JFX1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JFX1_9EUKA)

HSP 1 Score: 137 bits (346), Expect = 4.480e-39
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSP 345
            RE +RP APSVL E A  WF+G+P  GSPYMS TA AK  + +++PAV HVDGS+RLQTV     PLYH LISAFY+L+GVPMVLNTSFN+ GEPIV SP
Sbjct:   33 REQWRPLAPSVLAERADEWFDGVPDGGSPYMSFTAYAKEHMREAIPAVVHVDGSARLQTVASSTAPLYHALISAFYALSGVPMVLNTSFNLAGEPIVESP 132          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A0G4FRZ2_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRZ2_VITBC)

HSP 1 Score: 141 bits (356), Expect = 9.800e-37
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSP 345
            RE FRPFAPSV+ EEA GWFE LP  GSPYMS+TA  +      VPAVCHVDG++RLQTVRE D PL++RL+  F+ LTG+PMV+NTSFN+ GEPIV  P
Sbjct:  602 REAFRPFAPSVIAEEADGWFEDLPECGSPYMSITAAVREERRGLVPAVCHVDGTARLQTVRESDEPLFYRLLQQFFKLTGIPMVVNTSFNIKGEPIVEEP 701          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S3TJZ8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TJZ8_EMIHU)

HSP 1 Score: 129 bits (325), Expect = 1.880e-34
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSP 345
            RE FRPFAPSVL E AG WFEG+PP GSPYMS   P K    D++PAVCHVDGS+RLQTV  + +P +  LI+AF++LTGVP+VLNTSFN    EPIV  P
Sbjct:  110 REPFRPFAPSVLAEHAGDWFEGVPPSGSPYMSFALPCKR--RDAIPAVCHVDGSARLQTVGGEADPRWRALIAAFFALTGVPLVLNTSFNTRPAEPIVEGP 208          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S4WGL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WGL8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.350e-32
Identity = 67/105 (63.81%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   46 REDFRPFAPSVLEEEAGGWFE----GLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSP 345
            RE FRPFAPS L EEA  WF+        + SPYMS+TA  K      +PAV HVDGSSRLQTV  K  PLYHRLISAF+ LTGVPMVLNTSFN + GEPIV +P
Sbjct:   91 RESFRPFAPSCLAEEASNWFDLGDNDFNDNVSPYMSITANVKESKRGQIPAVTHVDGSSRLQTVTAKAEPLYHRLISAFFDLTGVPMVLNTSFNTLKGEPIVETP 195          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A2D5ZSA0_9BACT (Carbam_trans_C domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2D5ZSA0_9BACT)

HSP 1 Score: 122 bits (306), Expect = 2.260e-32
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSPQ 348
            +PR ++  N   A V  RE FRPFAP+V+EE A  +FE + P  SP+M    P +    D +PAV H+DGS+RLQT+ ++D P +HRLISAF  LTG P+VLNTSFNV GEPIV +P+
Sbjct:   93 DPRDASMKNHINARVKHREGFRPFAPAVIEERASDYFEVVGP--SPFMLEICPVRADKRDEIPAVTHIDGSARLQTITDEDTPHFHRLISAFDELTGTPVVLNTSFNVRGEPIVCTPE 208          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7S2KMJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KMJ5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.580e-32
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   46 REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSPQ 348
            RE FRPFAPSVL E A  WF     + SPYMS+T   +   A  +P+V H+D SSRLQTV E+D PLYH+LISAF+  TGVP+VLNTSFN + GEPIV +P+
Sbjct:   34 RESFRPFAPSVLAEHADEWFVDTADNVSPYMSMTTLVRGEKASEIPSVTHIDRSSRLQTVTEEDEPLYHKLISAFHEATGVPLVLNTSFNTLKGEPIVETPE 135          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: A0A7C8ALU7_9BACT (Carbamoyltransferase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8ALU7_9BACT)

HSP 1 Score: 119 bits (299), Expect = 7.710e-32
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGEPIVNSP 345
            +P      ++   +V  RE+FRPFAPSVLEE+AG +F G     SP+M    P   G  D++PAV H DG++R+QTV  + +P Y+RLI AF    GVPMVLNTSFNVMGEPIVNSP
Sbjct:   47 DPTRPEMKDLINTYVKHREEFRPFAPSVLEEKAGEYFAGCVQ--SPFMLFVYPVVRGKRDTIPAVTHADGTARVQTVSREVHPRYYRLIEAFEKRRGVPMVLNTSFNVMGEPIVNSP 161          
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Match: B8BQS2_THAPS (Carbamoyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQS2_THAPS)

HSP 1 Score: 122 bits (306), Expect = 1.250e-31
Identity = 68/125 (54.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 EPRSSNFSNMRGAFV--REDFRPFAPSVLEEEAGGWFE------GLPPDGSPYMSLTAPAKPGVADSVPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVM-GEPIVNSPQ 348
            +PR          FV  RE FRPFAPS L EEA  WF+          + SPYMS+TA  K    D +PAV HVDGSSRLQTV  +  P Y+RLISAFY  TGVPMVLNTSFN +  EPIV +P+
Sbjct:  158 DPRKKGLVRFINEFVKKRESFRPFAPSALAEEASNWFDLGEYAAAADNNVSPYMSITAQVKESKRDLIPAVTHVDGSSRLQTVTPEAEPFYYRLISAFYKATGVPMVLNTSFNTLKSEPIVETPR 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162478.3967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3R1_ECTSI2.670e-5085.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBM7_9STRA4.140e-4869.49Carbamoyltransferase-domain-containing protein n=1... [more]
A0A7S0JFX1_9EUKA4.480e-3967.00Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A0G4FRZ2_VITBC9.800e-3766.00Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S3TJZ8_EMIHU1.880e-3464.36Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S4WGL8_9STRA1.350e-3263.81Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A2D5ZSA0_9BACT2.260e-3253.39Carbam_trans_C domain-containing protein n=1 Tax=G... [more]
A0A7S2KMJ5_9STRA6.580e-3259.80Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7C8ALU7_9BACT7.710e-3253.85Carbamoyltransferase n=1 Tax=Candidatus Hydrogened... [more]
B8BQS2_THAPS1.250e-3154.40Carbamoyltransferase (Fragment) n=1 Tax=Thalassios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162478contigH-elongata_contig162478:288..1097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog2880.D7G3R1
EggNOG free text desc.Carbamoyltransferase C-terminus
EggNOG OGs2RKTV@2759,COG2192@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162478.3967.1prot_H-elongata_contig162478.3967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162478 315..1097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.8461685-UTR-H-elongata_contig162478:287..3141622929950.8461685-UTR-H-elongata_contig162478:287..314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162478 288..314 +
1691679220.421418-UTR-H-elongata_contig162478:287..3141691679220.421418-UTR-H-elongata_contig162478:287..314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162478 288..314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.8692024-CDS-H-elongata_contig162478:314..5411622929950.8692024-CDS-H-elongata_contig162478:314..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162478 315..541 +
1691679220.4312463-CDS-H-elongata_contig162478:314..5411691679220.4312463-CDS-H-elongata_contig162478:314..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162478 315..541 +
1622929950.890568-CDS-H-elongata_contig162478:1003..10971622929950.890568-CDS-H-elongata_contig162478:1003..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162478 1004..1097 +
1691679220.4409525-CDS-H-elongata_contig162478:1003..10971691679220.4409525-CDS-H-elongata_contig162478:1003..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162478 1004..1097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162478.3967.1

>prot_H-elongata_contig162478.3967.1 ID=prot_H-elongata_contig162478.3967.1|Name=mRNA_H-elongata_contig162478.3967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MRGAFVREDFRPFAPSVLEEEAGGWFEGLPPDGSPYMSLTAPAKPGVADS
VPAVCHVDGSSRLQTVREKDNPLYHRLISAFYSLTGVPMVLNTSFNVMGE
PIVNSPQ
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mRNA from alignment at H-elongata_contig162478:288..1097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162478.3967.1 ID=mRNA_H-elongata_contig162478.3967.1|Name=mRNA_H-elongata_contig162478.3967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=810bp|location=Sequence derived from alignment at H-elongata_contig162478:288..1097+ (Himanthalia elongata Himel1 dioecious)
GAACCGAGATCCTCGAACTTCTCTAACATGCGCGGCGCCTTCGTCAGGGA AGACTTCCGACCCTTCGCGCCCAGCGTGCTGGAGGAGGAGGCAGGAGGGT GGTTCGAGGGCCTGCCGCCGGACGGTTCGCCGTACATGTCGCTCACCGCG CCGGCGAAGCCTGGCGTGGCGGACAGCGTACCGGCTGTCTGCCATGTCGA CGGGTCGTCCCGGCTTCAGACCGTGCGAGAAAAAGATAACCCCCTCTACC ACAGGTTAGAGAGAGAGATAACCCGCAGACCGAACCGACTCCTTCGTGCG AAAACTTGTTAATATTATTTATTTATTTTTATTATTCCTATTATTACTCA CATTATTATTACTGTTACTATTACTAATATTAATTATTTATTATTACTAA TATTATTATTGCTTTCACCGAAATCATGTTGGTACGTTTTTTCTTCCGGG TGGCTTGGTTTGGGGTGGCTGATCGACCGCTCTCGCCTGGATTTGAGGAT TCTAAAATCCGTATTTGGATTTGGCGTCGAACGGACAAACAAGATTGTCC TCGTCTTATTACATATGCTTTTGAGTAGATTACTCACGAAATAGAAAGTT TGAAGAAAGAAAAAAGATATAAAATGAGAAAAGGACAGTGGGAGGGGGCT ATTAATCCAATCAGGCAGTATTCCTGACGAGAAATCTCGCTTAGTTTATT TTGCTCACTACCCAAGGTTGATATCGGCCTTCTATTCTCTGACGGGAGTG CCGATGGTCCTGAACACGAGCTTCAACGTCATGGGGGAGCCCATCGTCAA CTCCCCGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig162478:288..1097+

>mRNA_H-elongata_contig162478.3967.1 ID=mRNA_H-elongata_contig162478.3967.1|Name=mRNA_H-elongata_contig162478.3967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig162478:288..1097+ (Himanthalia elongata Himel1 dioecious)
ATGCGCGGCGCCTTCGTCAGGGAAGACTTCCGACCCTTCGCGCCCAGCGT
GCTGGAGGAGGAGGCAGGAGGGTGGTTCGAGGGCCTGCCGCCGGACGGTT
CGCCGTACATGTCGCTCACCGCGCCGGCGAAGCCTGGCGTGGCGGACAGC
GTACCGGCTGTCTGCCATGTCGACGGGTCGTCCCGGCTTCAGACCGTGCG
AGAAAAAGATAACCCCCTCTACCACAGATGCGCGGCGCCTTCGTCAGGGA
AGACTTCCGACCCTTCGCGCCCAGCGTGCTGGAGGAGGAGGCAGGAGGGT
GGTTCGAGGGCCTGCCGCCGGACGGTTCGCCGTACATGTCGCTCACCGCG
CCGGCGAAGCCTGGCGTGGCGGACAGCGTACCGGCTGTCTGCCATGTCGA
CGGGTCGTCCCGGCTTCAGACCGTGCGAGAAAAAGATAACCCCCTCTACC
ACAGGTTGATATCGGCCTTCTATTCTCTGACGGGAGTGCCGATGGTCCTG
AACACGAGCTTCAACGTCATGGGGGAGCCCATCGTCAACTCCCCGCAAGT
TGATATCGGCCTTCTATTCTCTGACGGGAGTGCCGATGGTCCTGAACACG
AGCTTCAACGTCATGGGGGAGCCCATCGTCAACTCCCCGCAA
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