mRNA_H-elongata_contig16242.3965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16242.3965.1
Unique NamemRNA_H-elongata_contig16242.3965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.750e-30
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1
Query:  127 IVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCG----VQDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLVE 411
            +VL +RGEV ++EK+LK QTAGA GVIVVDNG C      CG     +DGGF++ DG HAW+GVKIP V+VS A+G+R +G M L+ +V E LGEQLV+
Sbjct:    5 VVLFERGEVPVVEKILKAQTAGAVGVIVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMLLQKIVVEGLGEQLVQ 103          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH)

HSP 1 Score: 112 bits (281), Expect = 2.330e-28
Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 1
Query:    1 SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDIL-NVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCG-----VQDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLG 396
            SI+P L   +G+ ++ V G++ Y VPN  +   L N  ++  RI  VDRGE+S+++KVLK Q A A GV++ D+GSC ++F YCG     +Q+GGF+  D   +W  V+IPVV+V+     RL+ AM +++V    LG
Sbjct:   56 SILPSLNAKYGVDEYSVTGELVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIADDGSCYEDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRLRDAMGIKSVYIPGLG 193          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A6A5AAA1_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAA1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.410e-26
Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    7 VPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
            VP    YH    FRV GD+ YAVPN    D+ N  ++ GR+VLVDRG+V I +K  + Q AG  G++VVD+G CG  F  CGV    +  GF  +D    W  + IPVVLV + +G R+KGAM L  V    LG Q V
Sbjct:  154 VPAWESYHNPDVFRVYGDIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKGAMDLVQVDMPDLGLQYV 290          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: W4FSY6_9STRA (PA domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSY6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.120e-25
Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    4 IVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
            +VP    YH    FRV GD+ YAVPN    D+ N  ++ GR+VLVDRG+V I +K  + Q AG  G++VVD+G CG  F  CGV    +  GF  +D    W  + IPVVLV + +G R+K AM L  +    LG Q V
Sbjct:  103 LVPAWESYHNPDVFRVYGDIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKAAMDLVQMDMPDLGLQYV 240          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A485LS24_9STRA (Aste57867_24352 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS24_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.790e-25
Identity = 55/127 (43.31%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRL 369
            S VP    ++    F V G++ YAVPN    D+ N   + GRI LVDRG+V I+EKV +   AG  GV+VVD+G CG  F  CGV       GF  +D    W  ++IPVVLV   +G R+K A+ L
Sbjct:   63 SFVPAWGSHYNPDSFHVHGEIVYAVPNTANEDLYNAHHVHGRIALVDRGDVPIVEKVKRVHEAGGVGVVVVDSGECGAGFT-CGVLGTPTSNGFLEQDEWFKWKSIRIPVVLVRRDDGDRIKAAIDL 188          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A418E1Q2_9STRA (PA domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E1Q2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.800e-22
Identity = 55/121 (45.45%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   58 DVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
            D+ YAVPN    D+ N  ++ GR+VLVDRG+V I +K  + Q AG  G++VVD+G CG  F  CGV    +  GF  +D    W  + IPVVLV + +G R+KGAM L  V    LG Q V
Sbjct:   62 DIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKGAMDLVQVDMPDLGLQYV 181          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.120e-22
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   40 DFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGVQDG----GFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRL 369
            D+ V+G++AYAVPN    D+ N+ ++ GRIVLVDRG+V I+EKV + Q AG   V++VD+G C   FE CG         F  +D +  W  + IPVVL+   +G R+K  M L
Sbjct:   73 DYHVQGEIAYAVPNTANDDLFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVDDGECSDGFE-CGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRIKARMSL 185          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A397CPJ1_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CPJ1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.170e-20
Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   49 VEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
            +E  + YAVPN    D+ N  ++ GR+VLVDRG+V I +K  + Q AG  G++VVD+G CG  F  CGV    +  GF  +D    W  + IPVVLV + +G R+K AM L  +    LG Q V
Sbjct:    1 MEVHIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKAAMDLVQMDMPDLGLQYV 123          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.290e-13
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   37 RDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGVQDG----GFSREDGTHAWTGVKIPVVLVSEAEGQRLKGA 360
            R F+V+ +V  A P   +S++ N + +  RIV+V RG++ I+ KVL  Q AGA GVIV D+G CG  F    V       G++  D    W  V++PVVL+   + +RL  A
Sbjct:   78 RSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAA 189          
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A2R5GKD5_9STRA (PA domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKD5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.450e-13
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGE-VSIIEKVLKTQTAGAKGVIVVDN-GSCGQEFEYCGVQDG---------GFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVF 384
            S +     +HG   + V+G +A AVPN  +  I+N  ++  R+ LV RG  V+++EKVL+ Q AGA  VI+VD    C + F YCG   G         GF+ +D   +W  V+IP +L+   +  +L     L T+  
Sbjct:   23 SFIDSWDAHHGPVKYHVDGRLAIAVPNDAREAIINGHQVKDRLTLVYRGGGVTLLEKVLRVQEAGASAVIIVDEEDGCDENF-YCGPFLGQRPADRLSLGFAHQDLASSWRSVRIPAILIRREDALKLTRWENLGTITL 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ4_ECTSI3.750e-3057.58Vacuolar sorting receptor, putative (ISS) n=1 Tax=... [more]
A0A482SJ43_9ARCH2.330e-2841.30PA domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A6A5AAA1_9STRA5.410e-2645.65PA domain-containing protein n=1 Tax=Aphanomyces a... [more]
W4FSY6_9STRA2.120e-2543.88PA domain-containing protein n=8 Tax=Aphanomyces a... [more]
A0A485LS24_9STRA6.790e-2543.31Aste57867_24352 protein n=1 Tax=Aphanomyces stella... [more]
A0A418E1Q2_9STRA5.800e-2245.45PA domain-containing protein n=2 Tax=Aphanomyces a... [more]
A0A6G0W7Z3_9STRA6.120e-2243.86PA domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A397CPJ1_9STRA1.170e-2042.74PA domain-containing protein n=1 Tax=Aphanomyces a... [more]
D8LI37_ECTSI2.290e-1338.39PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A2R5GKD5_9STRA4.450e-1333.81PA domain-containing protein n=1 Tax=Hondaea ferme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16242contigH-elongata_contig16242:5874..6730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.9e-11
Seed eggNOG ortholog2880.D8LI37
EggNOG OGs29K29@1,2RTB6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size429
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16242.3965.1prot_H-elongata_contig16242.3965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16242 5874..6730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.6720362-CDS-H-elongata_contig16242:5873..61521622929950.6720362-CDS-H-elongata_contig16242:5873..6152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16242 5874..6152 -
1691679220.3233678-CDS-H-elongata_contig16242:5873..61521691679220.3233678-CDS-H-elongata_contig16242:5873..6152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16242 5874..6152 -
1622929950.685559-CDS-H-elongata_contig16242:6353..64451622929950.685559-CDS-H-elongata_contig16242:6353..6445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16242 6354..6445 -
1691679220.3370662-CDS-H-elongata_contig16242:6353..64451691679220.3370662-CDS-H-elongata_contig16242:6353..6445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16242 6354..6445 -
1622929950.6962335-CDS-H-elongata_contig16242:6672..67301622929950.6962335-CDS-H-elongata_contig16242:6672..6730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16242 6673..6730 -
1691679220.347774-CDS-H-elongata_contig16242:6672..67301691679220.347774-CDS-H-elongata_contig16242:6672..6730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16242 6673..6730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16242.3965.1

>prot_H-elongata_contig16242.3965.1 ID=prot_H-elongata_contig16242.3965.1|Name=mRNA_H-elongata_contig16242.3965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGE
VSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGVQDGGFSREDGTHAWT
GVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLVEQKQDE*
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mRNA from alignment at H-elongata_contig16242:5874..6730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16242.3965.1 ID=mRNA_H-elongata_contig16242.3965.1|Name=mRNA_H-elongata_contig16242.3965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=857bp|location=Sequence derived from alignment at H-elongata_contig16242:5874..6730- (Himanthalia elongata Himel1 dioecious)
TCAATAGTACCCGGTTTGGCGCCGTATCATGGTCTCCGGGACTTCAGAGT CGAAGGAGGTTAGTACGCCGTGAAGAATTTTGCAACGCGTGCGGAGGCTG GTACACCGGTCTACCATCTCTAATATGTGTAGCTCCTTTTACGCCTGCGC ATACCCGAGAGCAATCTTGACGCCGCGTTTAGACGTGTTCCGACGACGTA CCATGCTATGCCTCACGTTCGATCTTTTCCAGCCGAATGACGTGAATTAC CCTGCTTGCTTTTCTAAAAACGGTGGACGCGAAAGATGTTGCGTACGCCG TGCCGAACAAGTGCCAGTCTGATATCCTGAACGTCAAGGAAATAATCGGT CGCATCGTTCTCGTTGACCGTGGGGAGGTGGGTGAACCCCGAAAGACGAG AATACGACGTGCTATAAGAACTTCATCCCTCGTCGCATTGTCACCACCCA TGTCAGCAACACTTTATCAACCTAGACACGGCTAGCTCTCGCGAGTTTGA CAACGTTCACATTGAACGTAGTGACCGTTTTATACGACATTCAACTCCGA CAGCCCCTCCATGTGGTCGATATATTAGGTGTCGATAATTGAAAAGGTGC TCAAGACTCAGACAGCAGGGGCGAAGGGAGTTATTGTCGTCGACAACGGC AGCTGCGGCCAAGAGTTTGAATACTGTGGCGTGCAAGACGGTGGGTTTTC GAGGGAGGACGGCACACACGCCTGGACGGGGGTGAAGATTCCGGTTGTGC TCGTGTCGGAGGCGGAGGGTCAAAGGTTGAAAGGGGCGATGCGGTTGCGA ACCGTTGTTTTTGAGCGGCTGGGCGAGCAGCTTGTAGAACAAAAGCAAGA CGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16242:5874..6730-

>mRNA_H-elongata_contig16242.3965.1 ID=mRNA_H-elongata_contig16242.3965.1|Name=mRNA_H-elongata_contig16242.3965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig16242:5874..6730- (Himanthalia elongata Himel1 dioecious)
TCAATAGTACCCGGTTTGGCGCCGTATCATGGTCTCCGGGACTTCAGAGT
CGAAGGAGTCAATAGTACCCGGTTTGGCGCCGTATCATGGTCTCCGGGAC
TTCAGAGTCGAAGGAGATGTTGCGTACGCCGTGCCGAACAAGTGCCAGTC
TGATATCCTGAACGTCAAGGAAATAATCGGTCGCATCGTTCTCGTTGACC
GTGGGGAGATGTTGCGTACGCCGTGCCGAACAAGTGCCAGTCTGATATCC
TGAACGTCAAGGAAATAATCGGTCGCATCGTTCTCGTTGACCGTGGGGAG
GTGTCGATAATTGAAAAGGTGCTCAAGACTCAGACAGCAGGGGCGAAGGG
AGTTATTGTCGTCGACAACGGCAGCTGCGGCCAAGAGTTTGAATACTGTG
GCGTGCAAGACGGTGGGTTTTCGAGGGAGGACGGCACACACGCCTGGACG
GGGGTGAAGATTCCGGTTGTGCTCGTGTCGGAGGCGGAGGGTCAAAGGTT
GAAAGGGGCGATGCGGTTGCGAACCGTTGTTTTTGAGCGGCTGGGCGAGC
AGCTTGTAGAACAAAAGCAAGACGAGTAAGTGTCGATAATTGAAAAGGTG
CTCAAGACTCAGACAGCAGGGGCGAAGGGAGTTATTGTCGTCGACAACGG
CAGCTGCGGCCAAGAGTTTGAATACTGTGGCGTGCAAGACGGTGGGTTTT
CGAGGGAGGACGGCACACACGCCTGGACGGGGGTGAAGATTCCGGTTGTG
CTCGTGTCGGAGGCGGAGGGTCAAAGGTTGAAAGGGGCGATGCGGTTGCG
AACCGTTGTTTTTGAGCGGCTGGGCGAGCAGCTTGTAGAACAAAAGCAAG
ACGAGTAA
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