mRNA_H-elongata_contig16237.3962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16237.3962.1
Unique NamemRNA_H-elongata_contig16237.3962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: D8LEA1_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA1_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 9.360e-65
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:   31 SANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFSDCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQ 354
            SANTRLMRDLSRLMRSDT+KLGFSLQLKNDDAL+EW+INLFGFSDCPLAEDMK+L KEK LDHVRLMMKFKDDYPF+PPFV IVYPRFKRSTGYIIDGAFCMELLTNQ
Sbjct:  187 SANTRLMRDLSRLMRSDTKKLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMKRLEKEKHLDHVRLMMKFKDDYPFSPPFVHIVYPRFKRSTGYIIDGAFCMELLTNQ 294
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: A0A835ZBS4_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS4_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.670e-47
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:   34 ANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFSDCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQ 354
            ANTRLMRDLSRLMR+DT  LGF+L+L +DD L  W + +FGF+DCPLAEDM KL KE++L+H+ L MKF +DYP++PPF R+VYPRF R TGYI+DGAFC ELLT Q
Sbjct:  150 ANTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQ 256
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: A0A7S3XWH9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWH9_HETAK)

HSP 1 Score: 130 bits (326), Expect = 6.470e-35
Identity = 59/108 (54.63%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:   31 SANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFSDCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYI-IDGAFCMELLTN 351
            + N RLM DL+++MR+DT  LGFSL+ KN+D+++ W   LF F DC LA+D+ +L + K +D V L ++FK DYPF+PPF+R+VYPRFK  TG++ I G+ CMELLTN
Sbjct:  105 AGNKRLMTDLAKIMRTDTTGLGFSLEPKNEDSMDRWVCKLFNFEDCALAQDLVQLKERKDIDFVELELQFKSDYPFSPPFIRVVYPRFKFHTGHVTIGGSICMELLTN 212
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: B8C5U5_THAPS (UBC core domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5U5_THAPS)

HSP 1 Score: 114 bits (285), Expect = 3.150e-27
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:    1 LSLPVSLSPRSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFS-DCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQARN 363
            +SL      +    RL  DL ++M +DT++ GFSL+  ++D++++W I LFGF  D  LA+D+  +     +DHV L M F DDYPF PPFVR+V PRFKR TG++++GA CMELLT    N
Sbjct:  311 MSLRAEKESKGGRRRLASDLYKIMMADTDEAGFSLEPCDEDSMDKWCIKLFGFDCDSHLAKDLMVVG----MDHVELEMSFPDDYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTKDGWN 428
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: A0A448Z8A8_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8A8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.320e-27
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 1 
Query:    1 LSLPVSLSPRSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFS-DCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQARN 363
            +SL        +  RL +DL R+M  DTE+ GFSL  + +D++ +W+I LF F  D  LA+DM  +     +DH++L MKF + YPF PPFVR+V PRFKR TG++++GA CMELLT    N
Sbjct:  256 MSLRAQQETSGSKRRLAQDLYRIMNQDTEEAGFSLAPQTEDSMEKWTIKLFQFDPDSNLAKDMLVVG----IDHIKLEMKFPEQYPFEPPFVRVVNPRFKRQTGFVMNGALCMELLTKDGWN 373
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: A0A1Z5K8B1_FISSO (Ubiquitin-conjugating enzyme E2 Q n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B1_FISSO)

HSP 1 Score: 110 bits (276), Expect = 9.360e-27
Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   43 RLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFS-DCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQARN 363
            RL +DL R+M  DT + GFSL    +D++  W+I LF F  D  LA+DMK L     +DH+ L M F D YPF PPFVR+V PRFKR TG+++ GA CMELLT    N
Sbjct:  159 RLAQDLYRIMNQDTSEAGFSLHPTAEDSMKHWTIELFQFDPDSNLAKDMKVLG----IDHIELEMTFPDQYPFEPPFVRVVKPRFKRQTGFVMSGALCMELLTKDGWN 262
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: A0A7S1ZF53_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZF53_TRICV)

HSP 1 Score: 108 bits (271), Expect = 9.750e-27
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 1 
Query:    1 LSLPVSLSPRSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFS-DCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQARN 363
            +SL        +  RL  DL ++M +DT++ GF ++ K++D+L+ WS+ LF F  D  L++D+  L     +D V L M F D YPF PPFVR+V PRFKR TG++++GA CMELLT++  N
Sbjct:    1 MSLRAESEKTGSKRRLAADLYKIMMADTDEAGFKIEPKSEDSLDRWSVRLFAFDEDSNLSKDLAVLG----IDAVELEMSFPDQYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTSEGWN 118
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: B7G7I5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7I5_PHATC)

HSP 1 Score: 110 bits (276), Expect = 4.630e-26
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1 
Query:    1 LSLPVSLSPRSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFS-DCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQARN 363
            +SL           RL +DL R+M  DT K GFSL+   +D++  W+I LF F  D  LA+DM  L     L+H+ L M F + YPF PPFVR+  PRFKR TG++++GA CMELLTN+  N
Sbjct:  278 MSLRAEKETSGGKRRLAQDLYRIMNQDTNKAGFSLKPSKEDSMERWTIKLFKFDEDSNLAKDMLVLG----LEHIELEMSFPEQYPFEPPFVRVSRPRFKRQTGFVMNGALCMELLTNEGWN 395
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: A0A7S3Q9L1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9L1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.290e-25
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:    1 LSLPVSLSPRSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFS-DCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQARN 363
            +SL           RL  DL ++M +DT++ GF+++  +D+ ++EW++ LF F  D  L +D+  L     LDHV L M F + YPF PPFVR+V PRFKR TG++++GA CMELLTN+  N
Sbjct:  301 MSLRAEREKSGGRRRLAADLYKVMMTDTQEAGFAVEQNDDECMDEWTVRLFKFDEDSDLHKDLLVLG----LDHVELKMNFPEQYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTNEGWN 418
[Close]
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Match: K0RZ81_THAOC (UBC core domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZ81_THAOC)

HSP 1 Score: 109 bits (272), Expect = 1.300e-25
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1 
Query:    1 LSLPVSLSPRSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINLFGFS-DCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQARN 363
            +SL           RL  DL ++M +DT++ GFSL+  ++D++++W INLFGF  D  LA+D+         D V L M F DDYPF PPFVR+V PRF+R TG+++ GA CMELLT+   N
Sbjct:  236 MSLRAEKEKTGGRRRLASDLYKIMMADTKEAGFSLEPVDEDSMDKWRINLFGFDEDSNLAKDLMVCGT----DSVELQMSFPDDYPFKPPFVRVVKPRFQRQTGFVMSGALCMELLTSDGWN 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16237.3962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEA1_ECTSI9.360e-6592.59UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZBS4_9STRA6.670e-4768.22Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S3XWH9_HETAK6.470e-3554.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C5U5_THAPS3.150e-2746.72UBC core domain-containing protein n=1 Tax=Thalass... [more]
A0A448Z8A8_9STRA5.320e-2746.72UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A1Z5K8B1_FISSO9.360e-2751.85Ubiquitin-conjugating enzyme E2 Q n=2 Tax=Fistulif... [more]
A0A7S1ZF53_TRICV9.750e-2744.26Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B7G7I5_PHATC4.630e-2646.72Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3Q9L1_9STRA1.290e-2544.26Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0RZ81_THAOC1.300e-2545.90UBC core domain-containing protein n=1 Tax=Thalass... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16237contigH-elongata_contig16237:450..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue3.8e-52
Seed eggNOG ortholog2880.D8LEA1
Preferred nameUBE2Q1
KEGG koko:K10582,ko:K19362
KEGG Pathwayko04120,map04120
GOsGO:0000003,GO:0000209,GO:0001967,GO:0002790,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0006810,GO:0007154,GO:0007267,GO:0007275,GO:0007565,GO:0007566,GO:0007610,GO:0007617,GO:0007618,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009566,GO:0009914,GO:0009987,GO:0010817,GO:0015031,GO:0015833,GO:0016020,GO:0016567,GO:0016740,GO:0019098,GO:0019538,GO:0019787,GO:0019953,GO:0022414,GO:0023052,GO:0023061,GO:0030072,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0033036,GO:0036211,GO:0036477,GO:0040011,GO:0042886,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0046879,GO:0046903,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051704,GO:0051705,GO:0061458,GO:0061631,GO:0061650,GO:0065007,GO:0065008,GO:0070459,GO:0070647,GO:0070936,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0097458,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin conjugating enzyme activity
EggNOG OGsKOG0897@1,KOG0897@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-00_001460.1
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.3498592-CDS-H-elongata_contig16237:449..6321622929950.3498592-CDS-H-elongata_contig16237:449..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16237 450..632 -
1691679220.192511-CDS-H-elongata_contig16237:449..6321691679220.192511-CDS-H-elongata_contig16237:449..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16237 450..632 -
1622929950.4122248-CDS-H-elongata_contig16237:1260..14401622929950.4122248-CDS-H-elongata_contig16237:1260..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16237 1261..1440 -
1691679220.2031438-CDS-H-elongata_contig16237:1260..14401691679220.2031438-CDS-H-elongata_contig16237:1260..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16237 1261..1440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16237.3962.1prot_H-elongata_contig16237.3962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16237 450..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16237.3962.1

>prot_H-elongata_contig16237.3962.1 ID=prot_H-elongata_contig16237.3962.1|Name=mRNA_H-elongata_contig16237.3962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
LSLPVSLSPRSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALNEWSINL
FGFSDCPLAEDMKKLAKEKRLDHVRLMMKFKDDYPFTPPFVRIVYPRFKR
STGYIIDGAFCMELLTNQARN
back to top

mRNA from alignment at H-elongata_contig16237:450..1440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16237.3962.1 ID=mRNA_H-elongata_contig16237.3962.1|Name=mRNA_H-elongata_contig16237.3962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=991bp|location=Sequence derived from alignment at H-elongata_contig16237:450..1440- (Himanthalia elongata Himel1 dioecious)
CTATCTCTCCCTGTCTCCCTTTCTCCCAGATCTGCCAACACCCGCTTGAT
GAGAGATCTTTCTCGACTGATGCGATCGGACACGGAGAAGCTGGGGTTCT
CTCTCCAGCTCAAGAACGACGATGCCCTCAACGAGTGGAGCATCAACCTC
TTCGGCTTCAGCGACTGCCCCTTAGCAGAGGTAAAAAATACGGAATCCAC
GCACGCGCACGGGGGAGAGGGGACGTGAGTCCGGAAGACGTGATATTGTA
TTTTCCTCCTGGGTGTTTAAGGAAGAGGGTTCTGCGCGGCCCGCTTGAGC
TCCTTGTATCTATATGGTAATGCAGTACAAGTTATGATATACAGTAGATA
GATATCCGTTCCCAAATCTTTGTGGCGTAGGCGGGACTCCCTTATTTTAT
TATTTGTTTCGGTGGACATCGTTACTCGATCGAGCATCACACCACAGGTA
GGTGTGTCCATGTAGTAATAGTAGTAATAATAATAGTAATAATATATCAC
GTTGTAGCGGATATGCGGCGCATCGTCATGATGTGAATTATTGTTCGTTC
GTGTCTCTCTGTGCGATCTTGGTTTTGACCCCCTCACCCCAACCCTGGTG
GGGGGTGCTTATGGTAGTTACATTATAGTCGGAGGGGGGGGCAACATCGA
AGTACTAGCAATGCGTCCGTCAGAGTACTAGTAAGACTTTAGCCCTTGAG
AGGAAGGGGCTTTTCTTGACAGTGTCGAGCGCGCAGACTCGCTCGTTGGT
GGGTTTCTTGTGCCCTGACCTGCCCAGCTCCTCCTCCGCCCGTGCGCCTG
GTTCACAGGACATGAAAAAGTTAGCCAAGGAGAAGCGCCTCGATCACGTA
CGCCTAATGATGAAGTTCAAGGACGACTACCCGTTCACGCCTCCCTTCGT
GCGCATCGTCTACCCTCGCTTCAAGCGCTCCACGGGCTACATCATCGACG
GCGCGTTTTGCATGGAACTCCTCACGAATCAGGCGAGAAAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16237:450..1440-

>mRNA_H-elongata_contig16237.3962.1 ID=mRNA_H-elongata_contig16237.3962.1|Name=mRNA_H-elongata_contig16237.3962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig16237:450..1440- (Himanthalia elongata Himel1 dioecious)
CTATCTCTCCCTGTCTCCCTTTCTCCCAGATCTGCCAACACCCGCTTGAT
GAGAGATCTTTCTCGACTGATGCGATCGGACACGGAGAAGCTGGGGTTCT
CTCTCCAGCTCAAGAACGACGATGCCCTCAACGAGTGGAGCATCAACCTC
TTCGGCTTCAGCGACTGCCCCTTAGCAGAGCTATCTCTCCCTGTCTCCCT
TTCTCCCAGATCTGCCAACACCCGCTTGATGAGAGATCTTTCTCGACTGA
TGCGATCGGACACGGAGAAGCTGGGGTTCTCTCTCCAGCTCAAGAACGAC
GATGCCCTCAACGAGTGGAGCATCAACCTCTTCGGCTTCAGCGACTGCCC
CTTAGCAGAGGACATGAAAAAGTTAGCCAAGGAGAAGCGCCTCGATCACG
TACGCCTAATGATGAAGTTCAAGGACGACTACCCGTTCACGCCTCCCTTC
GTGCGCATCGTCTACCCTCGCTTCAAGCGCTCCACGGGCTACATCATCGA
CGGCGCGTTTTGCATGGAACTCCTCACGAATCAGGCGAGAAATGACATGA
AAAAGTTAGCCAAGGAGAAGCGCCTCGATCACGTACGCCTAATGATGAAG
TTCAAGGACGACTACCCGTTCACGCCTCCCTTCGTGCGCATCGTCTACCC
TCGCTTCAAGCGCTCCACGGGCTACATCATCGACGGCGCGTTTTGCATGG
AACTCCTCACGAATCAGGCGAGAAAT
back to top