mRNA_H-elongata_contig162274.3959.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162274.3959.1
Unique NamemRNA_H-elongata_contig162274.3959.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Match: A0A6H5KVD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVD5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.360e-19
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   73 GVYGASVGTALLDAVGIGSDNLVPRGIAMGASAHSIGTAALMEREPE 213
            GVYGASVGTA+LDA+G+GSDNLVPRGIAMGASAHSIGTAALMEREPE
Sbjct:  428 GVYGASVGTAVLDAMGVGSDNLVPRGIAMGASAHSIGTAALMEREPE 474
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BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Match: A0A835YPB8_9STRA (LrgB-like family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.140e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   73 GVYGASVGTALLDAVGIGSDNLVPRGIAMGASAHSIGTAALMEREPE 213
            G+YGAS G  LLD +G   D ++PRGIA GASAHSIGTAAL+E EP+
Sbjct:  439 GIYGASFGKTLLDKMGYTKDRIIPRGIATGASAHSIGTAALLEDEPD 485
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BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Match: A0A7S4D6V3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6V3_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 2.510e-8
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   73 GVYGASVGTALLDAVGIGSDNLVPRGIAMGASAHSIGTAALMEREPEVTLI 225
            GVYGASVG  LL   G      + RG+AMGA+AHSIGTAALME EPE T I
Sbjct:  215 GVYGASVGKDLLAKFGAPPSAPLVRGLAMGATAHSIGTAALMEGEPEATAI 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVD5_9PHAE4.360e-1993.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPB8_9STRA1.140e-1065.96LrgB-like family-domain-containing protein n=1 Tax... [more]
A0A7S4D6V3_HETAK2.510e-864.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162274contigH-elongata_contig162274:220..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2e-16
Seed eggNOG ortholog2880.D7FRW1
EggNOG free text desc.LrgB-like family
EggNOG OGs2QQ63@2759,COG1346@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCidB/LrgB family
Ec32 orthologEc-23_004160.1
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.0858655-CDS-H-elongata_contig162274:219..4981622929950.0858655-CDS-H-elongata_contig162274:219..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162274 220..498 +
1691679220.086907-CDS-H-elongata_contig162274:219..4981691679220.086907-CDS-H-elongata_contig162274:219..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162274 220..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162274.3959.1prot_H-elongata_contig162274.3959.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162274 220..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162274.3959.1

>prot_H-elongata_contig162274.3959.1 ID=prot_H-elongata_contig162274.3959.1|Name=mRNA_H-elongata_contig162274.3959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
ASPTAASSNLTYDLISIMAHPHEPGVYGASVGTALLDAVGIGSDNLVPRG
IAMGASAHSIGTAALMEREPEVTLILLGSLSIFLSFVILLSTI
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mRNA from alignment at H-elongata_contig162274:220..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162274.3959.1 ID=mRNA_H-elongata_contig162274.3959.1|Name=mRNA_H-elongata_contig162274.3959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig162274:220..498+ (Himanthalia elongata Himel1 dioecious)
GCCTCGCCTACCGCCGCCTCATCCAACTTGACTTATGACTTGATCTCAAT
CATGGCTCATCCTCATGAACCAGGCGTGTATGGCGCGTCTGTGGGCACCG
CTCTCCTGGACGCTGTGGGTATTGGGAGCGACAACCTGGTGCCGAGGGGA
ATAGCCATGGGCGCGTCGGCGCACTCTATCGGAACGGCGGCGCTCATGGA
ACGAGAGCCGGAGGTGACTCTCATCTTGCTTGGTAGTCTCTCCATTTTTC
TGTCTTTCGTTATTCTTCTGTCTACAATC
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Coding sequence (CDS) from alignment at H-elongata_contig162274:220..498+

>mRNA_H-elongata_contig162274.3959.1 ID=mRNA_H-elongata_contig162274.3959.1|Name=mRNA_H-elongata_contig162274.3959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig162274:220..498+ (Himanthalia elongata Himel1 dioecious)
GCCTCGCCTACCGCCGCCTCATCCAACTTGACTTATGACTTGATCTCAAT
CATGGCTCATCCTCATGAACCAGGCGTGTATGGCGCGTCTGTGGGCACCG
CTCTCCTGGACGCTGTGGGTATTGGGAGCGACAACCTGGTGCCGAGGGGA
ATAGCCATGGGCGCGTCGGCGCACTCTATCGGAACGGCGGCGCTCATGGA
ACGAGAGCCGGAGGTGACTCTCATCTTGCTTGGTAGTCTCTCCATTTTTC
TGTCTTTCGTTATTCTTCTGTCTACAATCGCCTCGCCTACCGCCGCCTCA
TCCAACTTGACTTATGACTTGATCTCAATCATGGCTCATCCTCATGAACC
AGGCGTGTATGGCGCGTCTGTGGGCACCGCTCTCCTGGACGCTGTGGGTA
TTGGGAGCGACAACCTGGTGCCGAGGGGAATAGCCATGGGCGCGTCGGCG
CACTCTATCGGAACGGCGGCGCTCATGGAACGAGAGCCGGAGGTGACTCT
CATCTTGCTTGGTAGTCTCTCCATTTTTCTGTCTTTCGTTATTCTTCTGT
CTACAATC
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