mRNA_H-elongata_contig16217.3954.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI) HSP 1 Score: 176 bits (446), Expect = 3.940e-51 Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 1
Query: 1 MDVRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSLS 297
MDVR WL QWPRVL+QL+ LVVGL RRQVSG YNCAQFTVELYRNLVG+ KWGTAGQLMDAVRE+GKEL++AKPSEL+VGNMVRRVLYIIRDEYES+ S
Sbjct: 55 MDVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESAFS 153
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA) HSP 1 Score: 124 bits (312), Expect = 4.950e-32 Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 1 MDVRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSL 294
+ VRT+L WP VL+Q++ L V L RRQVSG Y+CA+ T+EL R VGT KW TA QLM+ +R +G+ELI+AKPSEL+VGN+VRRVL++IR+EY + L
Sbjct: 23 VGVRTFLKNWPIVLSQMEKLSVSLKRRQVSGPYHCAKATLELLRYTVGTCKWATAAQLMELIRAVGRELIAAKPSELAVGNVVRRVLFVIREEYTAKL 120
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: A0A3R6WSI2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WSI2_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.290e-26 Identity = 48/101 (47.52%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 7 VRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSLSGLNA 309
++ WLA WP++ QL L+VGL RRQ++G+Y ++ T EL R ++GT +W A QLMD +R +G+ LI A P EL++GN++RRVL+IIR+EY +++ L++
Sbjct: 6 LKQWLAPWPKISAQLSNLLVGLKRRQITGSYETSRKTTELVRAILGTVRWTHARQLMDNIRLLGRVLIKAIPQELAIGNVIRRVLFIIREEYLNAMKTLSS 106
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: A0A024U0L0_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces TaxID=100860 RepID=A0A024U0L0_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.750e-26 Identity = 49/101 (48.51%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 7 VRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSLSGLNA 309
++ WLA WP++ TQL L+VGL RRQ++G+Y ++ T EL R ++GT +W A QLMD +R +G+ LI A P EL++GN++RRVL+IIR+EY +++ L++
Sbjct: 6 LKQWLAPWPKISTQLSNLLVGLKRRQITGSYETSRKTTELVRAILGTVRWTHARQLMDNIRLLGRVLIKAIPQELAIGNVIRRVLFIIREEYLNAMKTLSS 106
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: A0A1V9YTY4_9STRA (Translation initiation factor eIF-2B beta subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YTY4_9STRA) HSP 1 Score: 105 bits (262), Expect = 5.060e-25 Identity = 46/101 (45.54%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 7 VRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSLSGLNA 309
++ WLA WP+++ Q LVVGL RRQ++G+Y ++ T EL R ++G +W A QLM+ VR +G+ L+ A P EL++GN++RRVL+IIR+EY + + L++
Sbjct: 7 LQQWLAPWPKIVEQYKQLVVGLKRRQITGSYETSRKTTELLRAVLGAVRWAHARQLMENVRMLGRVLVKAMPQELAIGNVIRRVLFIIREEYLNGMKALSS 107
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: W7TWQ5_9STRA (Translation initiation factor eif-2b subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWQ5_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.720e-24 Identity = 45/102 (44.12%), Postives = 72/102 (70.59%), Query Frame = 1
Query: 4 DVRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSLSGLNA 309
D+ WL+ WP V Q +L+ L RR+V+G+ CA+ T+EL + ++GT +W TA +LM V+ +GK L+ A+P +L VGN+VRR+L+IIR+E+++ L + A
Sbjct: 11 DLDAWLSTWPHVHGQYRSLITSLQRRKVAGSLPCAKMTIELLKAVMGTCRWTTAAELMSVVKRVGKALVDAQPLQLVVGNVVRRILFIIREEHKNKLREVRA 112
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: K3WDK5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDK5_GLOUD) HSP 1 Score: 102 bits (255), Expect = 6.320e-24 Identity = 46/97 (47.42%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 4 DVRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSL 294
+++ WLA+WP V ++ALV+ L RRQV+G+Y+ A+ T L ++ T +W TAG++M+ VR++G L A EL++GN+VRRVLYIIR+EY ++L
Sbjct: 5 ELKEWLAEWPSVRESVEALVLSLKRRQVTGSYDTAKKTTMLLNKVIETVEWSTAGEIMEKVRQLGHMLTKAHSHELAIGNVVRRVLYIIREEYVNAL 101
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: A0A8K1FND4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FND4_PYTOL) HSP 1 Score: 100 bits (250), Expect = 3.120e-23 Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 7 VRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSL 294
V+ WL WP V +D LV+ L RRQ++G+Y+ A+ T+ L+ +++ T KW TA ++MD VR +G L A P EL++GN+VRRVLYIIR+E+ ++L
Sbjct: 6 VQPWLRDWPSVQANVDDLVLSLKRRQLAGSYDTAKRTIMLFSHMLETVKWSTASEIMDKVRGLGHMLTRAHPHELAIGNVVRRVLYIIREEHANAL 101
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: A0A6G0WLN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLN6_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.810e-23 Identity = 45/101 (44.55%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 7 VRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSLSGLNA 309
++ WLA WP++ L L++GL RRQ++G+Y ++ T EL R ++G +W A QLM+ VR +G+ LI A P EL++GN++RRVL+IIR+EY +++ L++
Sbjct: 6 LKQWLAPWPKINDLLSTLLLGLKRRQITGSYETSRKTTELLRAILGAVRWPHARQLMEHVRLLGRVLIKAIPQELAIGNVIRRVLFIIREEYLNAIKTLSS 106
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Match: A0A5D6XPM2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPM2_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 9.220e-21 Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 4 DVRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSKWGTAGQLMDAVREMGKELISAKPSELSVGNMVRRVLYIIRDEYESSL 294
++++WLA+ P V +D LV+ L RRQ++G+Y+ A+ T L ++ T +W TAG++M+ VR++G L A EL++GN+VRRVLYIIR+EY +L
Sbjct: 3 ELQSWLAERPAVRASVDDLVLSLKRRQLTGSYDTAKKTTMLLSRVIETVEWTTAGEIMEKVRQLGHMLTKAHSRELAIGNVVRRVLYIIREEYLGAL 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16217.3954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16217.3954.1 >prot_H-elongata_contig16217.3954.1 ID=prot_H-elongata_contig16217.3954.1|Name=mRNA_H-elongata_contig16217.3954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp MDVRTWLAQWPRVLTQLDALVVGLNRRQVSGAYNCAQFTVELYRNLVGTSback to top mRNA from alignment at H-elongata_contig16217:6395..7533+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16217.3954.1 ID=mRNA_H-elongata_contig16217.3954.1|Name=mRNA_H-elongata_contig16217.3954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1139bp|location=Sequence derived from alignment at H-elongata_contig16217:6395..7533+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16217:6395..7533+ >mRNA_H-elongata_contig16217.3954.1 ID=mRNA_H-elongata_contig16217.3954.1|Name=mRNA_H-elongata_contig16217.3954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig16217:6395..7533+ (Himanthalia elongata Himel1 dioecious)back to top |