mRNA_H-elongata_contig16214.3953.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16214.3953.1
Unique NamemRNA_H-elongata_contig16214.3953.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A6H5K8R2_9PHAE (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R2_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 9.150e-88
Identity = 264/719 (36.72%), Postives = 335/719 (46.59%), Query Frame = 1 
Query:    1 ANSLHLAGVLEALGRDELVCAALDPVSKCYSPSPYQEQGKTRAS----EHPSLVCRSRLLGMPLADRHSAISVACCLTHRLPRRALANFLCRLVLGADVTHFKADRANRSRERM-----------RC---------CPCGQQALGTG-----DGDVEMGRADTSISSRVGGTDAA---------------------------CSSCLARRAWVDPVSARLLAVACRKLRWGRPMATDEDIALERCLNVISGILAQPPQSTSWPDLCGNEDPPHPTSCRTVPSLCARMRFSKEIQQGECSTSSARSAASTVSTEPPDAPGGTIQSRGGGKFGSASIGADAKKGTSAILARVRSQRLRCYELSSDPLEIWLGSAQRDLVVSLSLPKGXXXXXXXXTEDEGEPIKG-IPTPPVSRMVPPSTRGPSPTPISTGTVRSPGGVIPVKESGRDSAPGRPEGETSSDGKASEDMMKTSTSEAVQVAAGAADSPGTR-----------------EGSVDAVDKEGEGSCLPPTMLERLSRVAERVAEAGARGATSVDVQGAAEASVSLLQAAVMPDARATSTAHVTP-----------PWKNCPQPH--QTLGAVCEGLRLHT---SGSKESPGCGDDLVMAVCKGFVNPALSLKNCLTFVRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGLILPLLCEGE-SSGVGSAQCELCTRLIKQV 1884
            ANSL++A VL AL ++ELV     PV++  S S  + Q   RA+    E P L CRSRL GMPLADRH+A++VAC L H+LPRRAL NF CRL+LG D+       ++ + +              C         C CG Q   +G       ++E G A+T     V   D A                           C SCL RRAW+D  SARLL VAC KL WG+ +  DE +AL+RCL  +S +L    QS                          R R  +E ++                     A GG+  S G     +A++     +G SA+ A VR +R+     +S             +                   D G    G +P  P S    P+TRG   +  STG VR  G     +     +   R E   S  G+A                                           EG+  A D+E    CLP  + +R++ VAE+VA AGARGA S DVQGAA A+VSLL+ A    +    T+  T            P+ + P+P   Q L AVC G+ L      G+  + GCGDDLVMAVC GFV PALSL+NCL FVRAVLVPRAR+LTAPASRLLVTAVS IG+ARP  VIDGL+LPLLC G+ +S VGSAQCELCTRLIKQV
Sbjct:   54 ANSLNVAEVLHALSQEELVL----PVARSGSASCRRHQTPHRANLDSAELPQLACRSRLFGMPLADRHAALTVACSLRHKLPRRALVNFCCRLILGKDIGRLPPGSSSEAHDGSGDPPTEQIPPGACRRQGGGRGLCACGGQLFASGGKTRASPEIEGGSAETHTRHFVSPDDVAAVRGAXXXXXXXXXXXXXXXXXXXXTTCRSCLGRRAWLDLGSARLLVVACHKLLWGKALPEDEALALDRCLRALSEVLGDRDQSR-------------------------RSRSKREAEELL-------------------AGGGSSGSCGVLPVSAAAVPEGRVRGISAVRAGVRRRRIGSMTTNSXXXXXXXXXXXXXM-------------ERRSAGDAGSVSAGWVPRLPAS----PTTRG---SKNSTG-VRGVGFARATEIEPSSALADRSERAASGAGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGNNTARDEE----CLPSVLRQRVASVAEKVAAAGARGAASTDVQGAAAAAVSLLREATKLPSNTAPTSPPTTLAVDGSSSSTGPFYDRPRPQLQQPLEAVCSGVGLDIPRGKGATATAGCGDDLVMAVCDGFVTPALSLRNCLAFVRAVLVPRARALTAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQV 699
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: D7FQ65_ECTSI (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ65_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 5.290e-75
Identity = 141/211 (66.82%), Postives = 157/211 (74.41%), Query Frame = 1 
Query: 1624 MAVCKGFVNPALSLKNCLTFVRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGLILPLLCEGE-SSGVGSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDAK----------GGSSGRRVGVAGGG--DSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYGPQLKP 2217
            MA+C GFV PALSL+NCL FVRAVLVPRAR+L APASRLLVTAVS IG+ARP  VIDGL+LPLLC G+ +S VGSAQCELCTRLIKQ+LPK  LEAVLVGLC P     A+          GGS G     A G   D+ G   + C  TELT+PV+T ALNLKP LSD AI ALVR +EAA+E   LQKSLKFTTL+H LVTRYGPQLKP
Sbjct:    1 MAICDGFVTPALSLRNCLAFVRAVLVPRARALNAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQILPKDTLEAVLVGLCGPAEDESAQTAGGWIEGPSGGSGGNGTNAAAGRRHDAAGSSSR-CVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKP 210
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A836CB37_9STRA (FA_FANCE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB37_9STRA)

HSP 1 Score: 125 bits (313), Expect = 7.750e-29
Identity = 79/221 (35.75%), Postives = 107/221 (48.42%), Query Frame = 1 
Query: 1627 AVCKGFVNPALSLKNCLTFVRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGLILPLL----CEGESSGV--------------------GSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDAKGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYGPQLKP 2217
            AVC   V PAL L+ C  FVR  L+PRA +L+APA R LV+ V+   + RP+AV++GL++PLL      G+ S                      GSAQCEL  R  +  LP HA   ++   C P+                             C   + T+ ++T+ L +K +L D A+ AL  R+EA +E     KSLKF TLLH LV +YGPQ  P
Sbjct:    1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPR-----------------------------CAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGP 192
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BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A6H5KA87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA87_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.110e-27
Identity = 72/130 (55.38%), Postives = 85/130 (65.38%), Query Frame = 1 
Query: 1870 LIKQVLPKHALEAVLVGLCQPKSSRDAK--GGSSGRRVGVAGGGDSHGQDEKS------------CPLTELTMPVITAALNLKPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYGPQLKP 2217
            L+ ++LPK  LEAVLVGLC P     A+  GG  G   G +GGG+  G +  +            C  TELT+PV+T ALNLKP LSD AI ALVR +EAA+E   LQKSLKFTTL+H LVTRYGPQLKP
Sbjct:    9 LVWRILPKDTLEAVLVGLCGPTEDESAQTAGGWIG---GPSGGGNGTGTNAAAGRRLYAAGSSLRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKP 135
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A7S2SSX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSX3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.540e-25
Identity = 76/225 (33.78%), Postives = 116/225 (51.56%), Query Frame = 1 
Query: 1546 LGAVCEGLRLHTSGSKESPGCGDDLVMAVCKGFVNPALSLKNCLTFVRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGLILPLLCEGESSGVGSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDAKGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNL--KPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYGPQLK 2214
            L AVCEG R   + S   P  GD ++M + + F  P++    C  F++ V++ +A  L  PA+R+ V+ +S + +ARPE  +   +L LLC   +  VGSAQCEL TR+IK  LP   LE +L GLC+P  +                         +SC  +++TMP++T  L    K  +S D    +V RLE   +   L+ SLK   L+H +++R+G   K
Sbjct:  346 LQAVCEGER---TWSLHLPRLGDGVLMLLAQNFTQPSIGQHACSAFLQHVMLAKALDLKKPATRVFVSTLSQMAKARPEIFVQNFLLGLLCR-PAEQVGSAQCELGTRMIKLGLPVACLEQLLCGLCRPPQA-----------------------GSRSCVWSDVTMPLVTGLLAALAKHSISSDTAAVVVDRLEMVVDTPALRSSLKLANLVHTMISRHGKHAK 543
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A176VN56_MARPO (FA_FANCE domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VN56_MARPO)

HSP 1 Score: 86.7 bits (213), Expect = 5.650e-14
Identity = 54/177 (30.51%), Postives = 93/177 (52.54%), Query Frame = 1 
Query: 1684 VRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGLILPLLCEGESSGVGSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDAKGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYGPQLK 2214
            + A+++P+  +L  PASR+L+TA++  G+  P AV+D ++ P++C    +G  S QCE+  RL+K  L +  + ++L  +  P+   +                    +  +S   TE  + V+   L+ K  +  D + +LV+ L+AA  E     SLKF  LL  LVT++GP+LK
Sbjct:  380 LHAIILPKIYALEKPASRILMTALTQAGKIHPRAVMDSIMFPIICS--KNGASSVQCEILNRLVKDCLTEDLILSLLQKMFVPRRESE----------------HDFSRSNRSWNWTEGVVGVVQNLLSHKVNIDQDCVASLVQDLDAAVAE--FSTSLKFGNLLLNLVTKHGPRLK 536
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A7R9Z4A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4A9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.040e-13
Identity = 60/209 (28.71%), Postives = 108/209 (51.67%), Query Frame = 1 
Query: 1615 DLVMAVCKGFVNPALSLKNCLTFVRAVLVPRARSLTA--PASRLLVTAVSNIGRARPEAVIDGLILPLLC------EGESSG-VGSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDAKGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYGPQLK 2214
            +L+ ++ K  +N  +S      ++R+ ++P   +L    PASR L++  S + R RP   +  L++P LC      +G S+G    A C+L  R++K    K  +  +L GL          G  +G ++ ++GG  S          T+ ++P++T+ +N +  L D  I  L R+++      +++KS+KF+TL H LVT+YG QL+
Sbjct:  239 ELITSLSKKCINQGISAIRATAYLRSFVLPLLSNLNGSKPASRTLISTTSWLARERPSETVKALLIPSLCVPIDVRKGSSNGGPNKALCDLVGRVVKGAKEKEPIAELLTGL--------VCGDPAGVKI-ISGGSCS----SDKMVWTDESIPIMTSCINKRATLPDATISELSRQVQLLVP--NMRKSMKFSTLFHALVTKYGNQLR 432
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: B8BUU0_THAPS (FA_FANCE domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUU0_THAPS)

HSP 1 Score: 73.6 bits (179), Expect = 8.620e-10
Identity = 62/208 (29.81%), Postives = 98/208 (47.12%), Query Frame = 1 
Query: 1612 DDLVMAVCKGFVNPALSLKNCLTFVRAVLVPRARSLTA--PASRLLVTAVSNIGRARPEAVIDGLILPLLC-EGESSGVGSAQCELCTRLIKQVLPKHALEAVLVGLCQPK--SSRDAKGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAIDALVRRLE---AASEERHLQKSLKFTTLLHGLVTRYGPQL 2211
            D  V ++ K ++  A        F+RA ++P    +    PASR+L + ++++ R RP   ++ +++P L  + E S     QCEL  R+++    K AL    V L   K  S+  + GG +                      T  TMP+ TAALN +P LSDD +  L  ++    +      L+K +KF+TL H  VT+YG QL
Sbjct:  447 DTTVSSLVKEYLTDATGALRANAFLRAFVLPLLLGMQGGKPASRVLTSVLASLARDRPIECVESVLVPTLTGKIEPSRF---QCELIARVLRG---KDALSVAAVALLVEKVLSTTGSTGGIN---------------------WTAHTMPLFTAALNRQPALSDDIVATLADQIAFHLSTDASPSLEKDMKFSTLFHAFVTKYGKQL 627
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A669DRF5_ORENI (FA_FANCE domain-containing protein n=7 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A669DRF5_ORENI)

HSP 1 Score: 64.3 bits (155), Expect = 5.590e-7
Identity = 52/203 (25.62%), Postives = 88/203 (43.35%), Query Frame = 1 
Query: 1600 PGCGDDLVMAVCKGFV--NPALSLKNCLTFVRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGLILPLLCEGESSGVGSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDAKGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYG 2202
            PG  D  +  +C   +  +P LS     T ++++L+ +  SL+ PASR LVTAV+++    P  V   LI P+L   E   +G  Q EL +RLI+  L  H    V+                               Q       +E  + +I + L+ KP+L+++       +L   S+     KS+KF  ++  ++T+Y 
Sbjct:  341 PGLPDQALPTLCNSVLALSPDLSYSTAATLIKSLLLEKVLSLSEPASRCLVTAVTSLCSRYPRPVCQALIGPVL---EKENIGPPQAELLSRLIESCLDSHYRLLVV-------------------------------QMTLKIAWSETVLSIIHSLLDSKPVLNEELFTQFTEQL--VSQAPRFTKSVKFAKMMLTVLTKYS 507
[Close]
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Match: A0A3Q3CEN9_HAPBU (FA complementation group E n=13 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3Q3CEN9_HAPBU)

HSP 1 Score: 63.9 bits (154), Expect = 7.170e-7
Identity = 52/203 (25.62%), Postives = 88/203 (43.35%), Query Frame = 1 
Query: 1600 PGCGDDLVMAVCKGFV--NPALSLKNCLTFVRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGLILPLLCEGESSGVGSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDAKGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAIDALVRRLEAASEERHLQKSLKFTTLLHGLVTRYG 2202
            PG  D  +  +C   +  +P LS     T ++++L+ +  SL+ PASR LVTAV+++    P  V   LI P+L   E   +G  Q EL +RLI+  L  H    V+                               Q       +E  + +I + L+ KP+L+++       +L   S+     KS+KF  ++  ++T+Y 
Sbjct:  324 PGLPDQALPKLCSSVLALSPDLSYSTAATLIKSLLLEKVLSLSEPASRCLVTAVTSLCSRYPRPVCQALIGPVL---EKENIGPPQAELLSRLIESCLDSHYRLLVV-------------------------------QMTLKIAWSEAVLSIIHSLLDSKPVLNEELFTQFTEQL--VSQAPRFTKSVKFAKMMLTVLTKYS 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16214.3953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8R2_9PHAE9.150e-8836.72FA_FANCE domain-containing protein n=1 Tax=Ectocar... [more]
D7FQ65_ECTSI5.290e-7566.82FA_FANCE domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CB37_9STRA7.750e-2935.75FA_FANCE domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KA87_9PHAE3.110e-2755.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SSX3_9STRA6.540e-2533.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A176VN56_MARPO5.650e-1430.51FA_FANCE domain-containing protein n=3 Tax=Marchan... [more]
A0A7R9Z4A9_9STRA2.040e-1328.71Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8BUU0_THAPS8.620e-1029.81FA_FANCE domain-containing protein n=1 Tax=Thalass... [more]
A0A669DRF5_ORENI5.590e-725.62FA_FANCE domain-containing protein n=7 Tax=Pseudoc... [more]
A0A3Q3CEN9_HAPBU7.170e-725.62FA complementation group E n=13 Tax=Pseudocrenilab... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16214contigH-elongata_contig16214:2..4216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog3218.PP1S13_273V6.1
KEGG koko:K10892
KEGG Pathwayko03460,map03460
KEGG ModuleM00413
EggNOG free text desc.Fanconi Anaemia group E protein FANCE
EggNOG OGs28IRW@1,2QR36@2759,37PF7@33090,3G95R@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFanconi Anaemia group E protein, C-terminal
Ec32 orthologEc-01_007270.1
Exons6
Model size2223
Cds size2220
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16214.3953.1prot_H-elongata_contig16214.3953.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16214 4..4216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.680862-CDS-H-elongata_contig16214:3..721622929949.680862-CDS-H-elongata_contig16214:3..72Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 4..72 -
1691679219.92011-CDS-H-elongata_contig16214:3..721691679219.92011-CDS-H-elongata_contig16214:3..72Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 4..72 -
1622929949.6979835-CDS-H-elongata_contig16214:550..8201622929949.6979835-CDS-H-elongata_contig16214:550..820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 551..820 -
1691679219.9403722-CDS-H-elongata_contig16214:550..8201691679219.9403722-CDS-H-elongata_contig16214:550..820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 551..820 -
1622929949.714547-CDS-H-elongata_contig16214:1248..26161622929949.714547-CDS-H-elongata_contig16214:1248..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 1249..2616 -
1691679219.9512155-CDS-H-elongata_contig16214:1248..26161691679219.9512155-CDS-H-elongata_contig16214:1248..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 1249..2616 -
1622929949.7300754-CDS-H-elongata_contig16214:2925..31411622929949.7300754-CDS-H-elongata_contig16214:2925..3141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 2926..3141 -
1691679219.962555-CDS-H-elongata_contig16214:2925..31411691679219.962555-CDS-H-elongata_contig16214:2925..3141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 2926..3141 -
1622929949.7465072-CDS-H-elongata_contig16214:3612..37571622929949.7465072-CDS-H-elongata_contig16214:3612..3757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 3613..3757 -
1691679219.9763587-CDS-H-elongata_contig16214:3612..37571691679219.9763587-CDS-H-elongata_contig16214:3612..3757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 3613..3757 -
1622929949.7614412-CDS-H-elongata_contig16214:4064..42161622929949.7614412-CDS-H-elongata_contig16214:4064..4216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 4065..4216 -
1691679219.9870749-CDS-H-elongata_contig16214:4064..42161691679219.9870749-CDS-H-elongata_contig16214:4064..4216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16214 4065..4216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16214.3953.1

>prot_H-elongata_contig16214.3953.1 ID=prot_H-elongata_contig16214.3953.1|Name=mRNA_H-elongata_contig16214.3953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=740bp
ANSLHLAGVLEALGRDELVCAALDPVSKCYSPSPYQEQGKTRASEHPSLV
CRSRLLGMPLADRHSAISVACCLTHRLPRRALANFLCRLVLGADVTHFKA
DRANRSRERMRCCPCGQQALGTGDGDVEMGRADTSISSRVGGTDAACSSC
LARRAWVDPVSARLLAVACRKLRWGRPMATDEDIALERCLNVISGILAQP
PQSTSWPDLCGNEDPPHPTSCRTVPSLCARMRFSKEIQQGECSTSSARSA
ASTVSTEPPDAPGGTIQSRGGGKFGSASIGADAKKGTSAILARVRSQRLR
CYELSSDPLEIWLGSAQRDLVVSLSLPKGKGKGKRRKTEDEGEPIKGIPT
PPVSRMVPPSTRGPSPTPISTGTVRSPGGVIPVKESGRDSAPGRPEGETS
SDGKASEDMMKTSTSEAVQVAAGAADSPGTREGSVDAVDKEGEGSCLPPT
MLERLSRVAERVAEAGARGATSVDVQGAAEASVSLLQAAVMPDARATSTA
HVTPPWKNCPQPHQTLGAVCEGLRLHTSGSKESPGCGDDLVMAVCKGFVN
PALSLKNCLTFVRAVLVPRARSLTAPASRLLVTAVSNIGRARPEAVIDGL
ILPLLCEGESSGVGSAQCELCTRLIKQVLPKHALEAVLVGLCQPKSSRDA
KGGSSGRRVGVAGGGDSHGQDEKSCPLTELTMPVITAALNLKPLLSDDAI
DALVRRLEAASEERHLQKSLKFTTLLHGLVTRYGPQLKPF
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mRNA from alignment at H-elongata_contig16214:2..4216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16214.3953.1 ID=mRNA_H-elongata_contig16214.3953.1|Name=mRNA_H-elongata_contig16214.3953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4215bp|location=Sequence derived from alignment at H-elongata_contig16214:2..4216- (Himanthalia elongata Himel1 dioecious)
GCGAACAGCTTGCATCTCGCTGGAGTCCTGGAGGCCCTCGGCCGTGATGA
GCTCGTTTGCGCCGCTCTGGATCCGGTAAGCAAATGCTACTCACCGTCAC
CATACCAAGAGCAGGGAAAGACGAGAGCCTCGGAGCACCCGTCGCTTGTC
TGGTGAGCGCTCGAGAGGATTAATAATAGTATGGCAAGGAACTGGCGTTA
TTATTTCTCGCCGCCGTCGTTGGGAAGGCGAACATATCCTGCAGTCTACC
ACAAATGAAAGTACAGCATGCGGACACTTGGACGTCGCGGCATGAGCCCT
CCGCAGGAACGAAGCGCATTTTTTTTACTATTTGCCCCGATCGTTGCCCA
ACACGCTCGGGACAACCCTATGTATCACTGCGTATTTCACCAGCGTGTCC
CTTGTACTGTTTCTACCCAACTGTATCCTTGTATATCAACGCTATTAACG
TTTTCCCAGTCGAAGCCGGCTGCTCGGAATGCCACTGGCGGACCGCCACT
CTGCGATCAGCGTCGCCTGTTGCCTCACGCATAGGCTTCCGCGCCGGGCG
CTTGCAAATTTCCTATGCCGGCTCGTCCTCGGCGCCGACGTTACGCACTT
TAAGGTGCAGTAAATCACGTGGCCCCAAATCAACAAATCTAGGACATGTA
CGAAGGTCAGAAATAATCTGCGTGGTATTCGTCCTCGCGCGGCGTGACGA
GATCGTCCCCCGCGCCAAGAATCGGAGCCCATCGCTTCGTTCTTCACGCG
GCCCAGCTCGTGTTGCACATGCTTAGCTTTTTCGCTTGAGTTTTTCTTGC
CTCGTTTTTTGGACGGCCTTTTCGACTGCAACCTTGCATCTTCCTGTCGT
AAAAAATGTATTTCACATATTTTGCTCGACGCCCGTGATTAAACCATCGT
TGCCCCGAGACTCTCCTGTTTCCAAGCGAGCTCCTACGCCTATCCTTGTC
TTGTTTGTCCCCGACACGAGGGAACATCTACATTTAGCCGTCGGGGCCGA
GTGCTCGCGTAATTTAGTGCCAGTCCAAACAAATGACACTGCGACCTCAA
CTCTCAACTCTCCCTTCTCGCGTAGGCGGATCGAGCTAACAGGAGTCGAG
AACGTATGCGCTGCTGTCCCTGCGGACAGCAGGCGTTGGGTACTGGAGAT
GGAGATGTAGAGATGGGTAGGGCAGATACGTCCATATCCTCCCGTGTGGG
GGGGACAGACGCCGCGTGTAGTTCGTGCCTGGCACGGAGAGCGTGGGTGG
ACCCCGTATCGGCGCGGCTCTTGGCGGTCGCGTGCAGAAAGGTGACCTAG
GACCTGTCTTCGACGCCCGCGTGTGTTGTCTCGTTGTTCGAAGATCGTGG
TTGACGATCCGCGACTCTATCGCGCGTCTGCTGGATGGGGATGCGGATCA
CGCGAGATTGATGCTGCCGTGGGCTCGTATTCCATCCGCGGTTGCCGAAT
TGTAGTCGCGTATCCCCGAGAATTGAGCCCGCTGCCGTTTTGTGTAGTTT
GTGGGGCTTACTGTACTCGTCTACTGTATTTAATTGCTGGTCGCACCAGC
CCCGTCAACATGATTTCTGCCTTTCGATGGATGAACGCCGTTTGTCCCAG
CTGCGTTGGGGACGCCCTATGGCAACAGATGAAGACATAGCGCTCGAGCG
ATGCCTCAACGTTATTTCGGGCATTCTCGCCCAGCCTCCGCAGAGCACGA
GTTGGCCGGACTTGTGCGGTAACGAAGACCCCCCCCATCCCACCTCCTGC
AGGACTGTGCCGTCTCTCTGCGCTCGCATGAGATTTTCCAAAGAGATACA
ACAGGGGGAATGCTCAACTTCGTCAGCACGATCTGCGGCATCGACAGTGT
CCACCGAGCCACCAGACGCTCCTGGAGGTACGATTCAAAGCCGAGGTGGG
GGGAAATTTGGATCCGCGTCGATCGGAGCGGACGCAAAAAAAGGGACGTC
GGCGATCCTTGCTAGAGTGCGTTCCCAACGCTTGCGATGTTACGAGCTTT
CTAGTGATCCCCTGGAAATATGGCTCGGGTCTGCTCAGCGTGACTTGGTT
GTATCTCTGTCGTTGCCGAAGGGGAAGGGCAAGGGCAAGCGACGGAAGAC
AGAGGATGAAGGAGAGCCGATAAAGGGAATACCCACACCACCGGTATCTA
GGATGGTGCCTCCCTCAACGCGAGGGCCTTCTCCGACGCCGATTAGCACG
GGTACTGTTAGGTCTCCGGGAGGTGTCATCCCGGTTAAAGAATCAGGAAG
AGATTCTGCTCCCGGCCGGCCCGAGGGAGAAACCTCTAGCGACGGTAAAG
CCAGCGAGGACATGATGAAGACGTCTACGTCAGAAGCTGTGCAAGTTGCG
GCCGGAGCGGCAGACAGCCCTGGAACGCGAGAAGGGAGCGTTGACGCCGT
GGATAAAGAAGGGGAAGGGAGTTGTTTACCGCCCACGATGCTAGAGCGGC
TGTCGCGCGTCGCCGAAAGGGTTGCCGAGGCCGGCGCACGTGGGGCGACC
TCTGTCGACGTTCAGGGAGCGGCGGAGGCCTCGGTGTCCCTCCTGCAGGC
CGCCGTGATGCCCGACGCGAGAGCCACGTCCACAGCGCATGTCACTCCTC
CGTGGAAAAACTGTCCGCAGCCCCACCAAACACTAGGAGCCGTGTGCGAG
GGCCTGAGGCTGCACACGTCTGGAAGTAAGGAGAGCCCGGGATGCGGCGA
TGATCTGGTGATGGCGGTATGTAAAGGCTTCGTCAACCCTGCCCTGAGCC
TCAAGAATTGCCTGACGTTCGTAAGGGCGGTGCTCGTGCCCAGAGCGCGG
TCGCTGACGGCGCCGGCTTCACGCCTTCTGGTTACGGCTGTGTCCAACAT
TGGTAGGGCTCGACCGGAGGCTGTGATTGACGGGCTTATCCTTCCACTCC
TGTGCGAGGGCGAGTCTTCAGGGGTGGGCTCGGCGCAGTGCGAGCTGTGC
ACCAGACTCATCAAGCAGGCAAGGTTACACGGTGGGCGCGGGTTGTTGGG
ATGCGCTCTTGTTTTCGGGATAGCTCGGGTGTTTTTTTTTTTGTGTGTAT
ATTTTGTGATTTCGGCAAAGCTTTTTTGAAACAAAAATATATTCTGGACT
TTTTGGTCTGAAAATATGGAAGAACGTCACCCGAAATGTGCTAGAGATTG
AGCAACATAATAACGCAATAGTATGAAGCAAACCGAGGGGTTTTGCAGCC
GACGTAAATCATTATTTGTAGTCGTGCCATACTATGGGAACCAAAAGAAG
AAACGCGTCGGGCGTGTCTATCCTCGCTCAATCTTTCAAATACAAACTAT
CAACCTTGTGGCATGCTTCTCTTCCCTCGATGGTCGATGGTATAGCAGCT
AAGGCATGCAAAACAATATTACGTTCCGTCCCACCCATCCCCGAAGGTTC
TACCAAAGCACGCTCTTGAGGCCGTATTGGTTGGCCTTTGCCAGCCGAAG
TCGAGCCGAGACGCAAAAGGCGGTAGCTCCGGGCGGAGAGTGGGGGTTGC
TGGCGGTGGCGACAGCCACGGGCAAGACGAGAAATCTTGCCCGTTAACAG
AGCTTACGATGCCTGTGATAACGGCCGCCCTGAACTTGAAGCCGCTGCTG
TCAGACGATGCGATCGACGCCTTGGTGCGGCGGTTGGAAGCCGCTTCTGA
GGAGCGGCATCTGCAGGTGGGGCGGCAGGCTACTTTGGCGGGATAAATTA
AAATCAATTTCACTACACCTAGGCCGATCAACTTGTGGCTTTAACCCAAC
CCCCCCCCCCGTGAACTGCAAGATCAGGGGAATCGNNNNNNNNNNAAGTA
AAACTGATGTCACTCCCCCCGGGCCCGGCAGTCGCTGGCTTCCCCCCCCC
CCCCCCCCCCCGTGAACTGCAAGATCAGGGGAATCGATGCTCCGAAAGAG
CAAAAATGGTATGAGCGTCCCGCCGCGTATTTTCTCCGGGCACGATTTGT
TTTTTTTGGGTGGGGGGGGGGTTGTCTATACATTGAAATGGCTTTTGAGA
CGGGGCAATAATCATCCACTAAGGTGAAATCAACATTTTTATGATCGCCG
TCGTATGTTCTTTCCGGTCCATGTTAATCCTCTCTCTCGTCCCCCCTTTT
ACCTCTCACACGGACGCCCCACCGCTCGGGACGCACCGATGCAGAAATCT
CTCAAGTTCACGACTCTGCTGCACGGCCTGGTGACTCGGTACGGACCTCA
ACTGAAGCCTTTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig16214:2..4216-

>mRNA_H-elongata_contig16214.3953.1 ID=mRNA_H-elongata_contig16214.3953.1|Name=mRNA_H-elongata_contig16214.3953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4440bp|location=Sequence derived from alignment at H-elongata_contig16214:2..4216- (Himanthalia elongata Himel1 dioecious)
GCGAACAGCTTGCATCTCGCTGGAGTCCTGGAGGCCCTCGGCCGTGATGA
GCTCGTTTGCGCCGCTCTGGATCCGGTAAGCAAATGCTACTCACCGTCAC
CATACCAAGAGCAGGGAAAGACGAGAGCCTCGGAGCACCCGTCGCTTGTC
TGGCGAACAGCTTGCATCTCGCTGGAGTCCTGGAGGCCCTCGGCCGTGAT
GAGCTCGTTTGCGCCGCTCTGGATCCGGTAAGCAAATGCTACTCACCGTC
ACCATACCAAGAGCAGGGAAAGACGAGAGCCTCGGAGCACCCGTCGCTTG
TCTGTCGAAGCCGGCTGCTCGGAATGCCACTGGCGGACCGCCACTCTGCG
ATCAGCGTCGCCTGTTGCCTCACGCATAGGCTTCCGCGCCGGGCGCTTGC
AAATTTCCTATGCCGGCTCGTCCTCGGCGCCGACGTTACGCACTTTAAGT
CGAAGCCGGCTGCTCGGAATGCCACTGGCGGACCGCCACTCTGCGATCAG
CGTCGCCTGTTGCCTCACGCATAGGCTTCCGCGCCGGGCGCTTGCAAATT
TCCTATGCCGGCTCGTCCTCGGCGCCGACGTTACGCACTTTAAGGCGGAT
CGAGCTAACAGGAGTCGAGAACGTATGCGCTGCTGTCCCTGCGGACAGCA
GGCGTTGGGTACTGGAGATGGAGATGTAGAGATGGGTAGGGCAGATACGT
CCATATCCTCCCGTGTGGGGGGGACAGACGCCGCGTGTAGTTCGTGCCTG
GCACGGAGAGCGTGGGTGGACCCCGTATCGGCGCGGCTCTTGGCGGTCGC
GTGCAGAAAGGCGGATCGAGCTAACAGGAGTCGAGAACGTATGCGCTGCT
GTCCCTGCGGACAGCAGGCGTTGGGTACTGGAGATGGAGATGTAGAGATG
GGTAGGGCAGATACGTCCATATCCTCCCGTGTGGGGGGGACAGACGCCGC
GTGTAGTTCGTGCCTGGCACGGAGAGCGTGGGTGGACCCCGTATCGGCGC
GGCTCTTGGCGGTCGCGTGCAGAAAGCTGCGTTGGGGACGCCCTATGGCA
ACAGATGAAGACATAGCGCTCGAGCGATGCCTCAACGTTATTTCGGGCAT
TCTCGCCCAGCCTCCGCAGAGCACGAGTTGGCCGGACTTGTGCGGTAACG
AAGACCCCCCCCATCCCACCTCCTGCAGGACTGTGCCGTCTCTCTGCGCT
CGCATGAGATTTTCCAAAGAGATACAACAGGGGGAATGCTCAACTTCGTC
AGCACGATCTGCGGCATCGACAGTGTCCACCGAGCCACCAGACGCTCCTG
GAGGTACGATTCAAAGCCGAGGTGGGGGGAAATTTGGATCCGCGTCGATC
GGAGCGGACGCAAAAAAAGGGACGTCGGCGATCCTTGCTAGAGTGCGTTC
CCAACGCTTGCGATGTTACGAGCTTTCTAGTGATCCCCTGGAAATATGGC
TCGGGTCTGCTCAGCGTGACTTGGTTGTATCTCTGTCGTTGCCGAAGGGG
AAGGGCAAGGGCAAGCGACGGAAGACAGAGGATGAAGGAGAGCCGATAAA
GGGAATACCCACACCACCGGTATCTAGGATGGTGCCTCCCTCAACGCGAG
GGCCTTCTCCGACGCCGATTAGCACGGGTACTGTTAGGTCTCCGGGAGGT
GTCATCCCGGTTAAAGAATCAGGAAGAGATTCTGCTCCCGGCCGGCCCGA
GGGAGAAACCTCTAGCGACGGTAAAGCCAGCGAGGACATGATGAAGACGT
CTACGTCAGAAGCTGTGCAAGTTGCGGCCGGAGCGGCAGACAGCCCTGGA
ACGCGAGAAGGGAGCGTTGACGCCGTGGATAAAGAAGGGGAAGGGAGTTG
TTTACCGCCCACGATGCTAGAGCGGCTGTCGCGCGTCGCCGAAAGGGTTG
CCGAGGCCGGCGCACGTGGGGCGACCTCTGTCGACGTTCAGGGAGCGGCG
GAGGCCTCGGTGTCCCTCCTGCAGGCCGCCGTGATGCCCGACGCGAGAGC
CACGTCCACAGCGCATGTCACTCCTCCGTGGAAAAACTGTCCGCAGCCCC
ACCAAACACTAGGAGCCGTGTGCGAGGGCCTGAGGCTGCACACGTCTGGA
AGTAAGGAGAGCCCGGGATGCGGCGATGATCTGGTGATGGCGGTATGTAA
AGGCTTCGTCAACCCTGCCCTGAGCCTCAAGAATTGCCTGACGTTCGTAA
GGGCGGTGCTCGTGCCCAGAGCGCGGTCGCTGACGGCGCCGGCTTCACGC
CTTCTGGTTACGGCTGTGTCCAACATTGGTAGGGCTCGACCGGAGGCTGT
GATTGACGGGCTTATCCTTCCACTCCTGTGCGAGGGCGAGTCTTCAGGGG
TGGGCTCGGCGCAGTGCGAGCTGTGCACCAGACTCATCAAGCAGCTGCGT
TGGGGACGCCCTATGGCAACAGATGAAGACATAGCGCTCGAGCGATGCCT
CAACGTTATTTCGGGCATTCTCGCCCAGCCTCCGCAGAGCACGAGTTGGC
CGGACTTGTGCGGTAACGAAGACCCCCCCCATCCCACCTCCTGCAGGACT
GTGCCGTCTCTCTGCGCTCGCATGAGATTTTCCAAAGAGATACAACAGGG
GGAATGCTCAACTTCGTCAGCACGATCTGCGGCATCGACAGTGTCCACCG
AGCCACCAGACGCTCCTGGAGGTACGATTCAAAGCCGAGGTGGGGGGAAA
TTTGGATCCGCGTCGATCGGAGCGGACGCAAAAAAAGGGACGTCGGCGAT
CCTTGCTAGAGTGCGTTCCCAACGCTTGCGATGTTACGAGCTTTCTAGTG
ATCCCCTGGAAATATGGCTCGGGTCTGCTCAGCGTGACTTGGTTGTATCT
CTGTCGTTGCCGAAGGGGAAGGGCAAGGGCAAGCGACGGAAGACAGAGGA
TGAAGGAGAGCCGATAAAGGGAATACCCACACCACCGGTATCTAGGATGG
TGCCTCCCTCAACGCGAGGGCCTTCTCCGACGCCGATTAGCACGGGTACT
GTTAGGTCTCCGGGAGGTGTCATCCCGGTTAAAGAATCAGGAAGAGATTC
TGCTCCCGGCCGGCCCGAGGGAGAAACCTCTAGCGACGGTAAAGCCAGCG
AGGACATGATGAAGACGTCTACGTCAGAAGCTGTGCAAGTTGCGGCCGGA
GCGGCAGACAGCCCTGGAACGCGAGAAGGGAGCGTTGACGCCGTGGATAA
AGAAGGGGAAGGGAGTTGTTTACCGCCCACGATGCTAGAGCGGCTGTCGC
GCGTCGCCGAAAGGGTTGCCGAGGCCGGCGCACGTGGGGCGACCTCTGTC
GACGTTCAGGGAGCGGCGGAGGCCTCGGTGTCCCTCCTGCAGGCCGCCGT
GATGCCCGACGCGAGAGCCACGTCCACAGCGCATGTCACTCCTCCGTGGA
AAAACTGTCCGCAGCCCCACCAAACACTAGGAGCCGTGTGCGAGGGCCTG
AGGCTGCACACGTCTGGAAGTAAGGAGAGCCCGGGATGCGGCGATGATCT
GGTGATGGCGGTATGTAAAGGCTTCGTCAACCCTGCCCTGAGCCTCAAGA
ATTGCCTGACGTTCGTAAGGGCGGTGCTCGTGCCCAGAGCGCGGTCGCTG
ACGGCGCCGGCTTCACGCCTTCTGGTTACGGCTGTGTCCAACATTGGTAG
GGCTCGACCGGAGGCTGTGATTGACGGGCTTATCCTTCCACTCCTGTGCG
AGGGCGAGTCTTCAGGGGTGGGCTCGGCGCAGTGCGAGCTGTGCACCAGA
CTCATCAAGCAGGTTCTACCAAAGCACGCTCTTGAGGCCGTATTGGTTGG
CCTTTGCCAGCCGAAGTCGAGCCGAGACGCAAAAGGCGGTAGCTCCGGGC
GGAGAGTGGGGGTTGCTGGCGGTGGCGACAGCCACGGGCAAGACGAGAAA
TCTTGCCCGTTAACAGAGCTTACGATGCCTGTGATAACGGCCGCCCTGAA
CTTGAAGCCGCTGCTGTCAGACGATGCGATCGACGCCTTGGTGCGGCGGT
TGGAAGCCGCTTCTGAGGAGCGGCATCTGCAGGTTCTACCAAAGCACGCT
CTTGAGGCCGTATTGGTTGGCCTTTGCCAGCCGAAGTCGAGCCGAGACGC
AAAAGGCGGTAGCTCCGGGCGGAGAGTGGGGGTTGCTGGCGGTGGCGACA
GCCACGGGCAAGACGAGAAATCTTGCCCGTTAACAGAGCTTACGATGCCT
GTGATAACGGCCGCCCTGAACTTGAAGCCGCTGCTGTCAGACGATGCGAT
CGACGCCTTGGTGCGGCGGTTGGAAGCCGCTTCTGAGGAGCGGCATCTGC
AGAAATCTCTCAAGTTCACGACTCTGCTGCACGGCCTGGTGACTCGGTAC
GGACCTCAACTGAAGCCTTTCAAATCTCTCAAGTTCACGACTCTGCTGCA
CGGCCTGGTGACTCGGTACGGACCTCAACTGAAGCCTTTC
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