mRNA_H-elongata_contig162134.3951.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162134.3951.1
Unique NamemRNA_H-elongata_contig162134.3951.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A6H5JD09_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD09_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.500e-18
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    7 GMEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNE 138
            GMEV+TVALACIY ERLCLAG VTKPNRRLAMAACLAIAYKFNE
Sbjct:  637 GMEVSTVALACIYFERLCLAGVVTKPNRRLAMAACLAIAYKFNE 680
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BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: D7G4Y2_ECTSI (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.650e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    7 GMEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNE 138
            GMEV+TVALA IY ERLCLAG VTKPNRRLAMAACLAIAYKFNE
Sbjct:  192 GMEVSTVALASIYFERLCLAGVVTKPNRRLAMAACLAIAYKFNE 235
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BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A7S2RWQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWQ1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.690e-14
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   10 MEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNEP 141
            +E+ATVA ACIY ERLC+ G VTK NRRL+MAACL +AYKFNEP
Sbjct:  405 VEIATVAYACIYFERLCMKGLVTKANRRLSMAACLLVAYKFNEP 448
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BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: W4GBX8_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBX8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-10
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   10 MEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNEP 141
            ++++TVALAC+Y E+L L  +VTKPNR+L M+ACL +A KFNEP
Sbjct:  364 LDISTVALACVYFEKLVLENYVTKPNRKLYMSACLILAVKFNEP 407
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BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A4D9D598_9STRA (Cyclin N-terminal domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D598_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-10
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    7 GMEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNE 138
            G+E+ T+ALAC+Y E+LCL   VTK NRRLA AACL ++YKF E
Sbjct:  266 GVELGTLALACVYFEKLCLLSLVTKSNRRLAFAACLILSYKFQE 309
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BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A835YPH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.990e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   10 MEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYK 129
            ++VA+VALAC+Y ERLCL   VTK NRRLAMAACL +AYK
Sbjct:  688 LQVASVALACVYFERLCLMALVTKANRRLAMAACLLLAYK 727
[Close]
BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A5D6Y0H5_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0H5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-9
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    7 GMEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNEP 141
             +EVATVA+AC+Y E+L L+ +V K NR+L MAACL +A KFNEP
Sbjct:  375 NLEVATVAMACVYFEKLVLSHFVNKGNRKLYMAACLLLAAKFNEP 419
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BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A024TI98_9STRA (Cyclin N-terminal domain-containing protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TI98_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-9
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   10 MEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNEP 141
            ++++TVALAC+Y E+L L  +VTK NR+L M+ACL +A KFNEP
Sbjct:  360 LDISTVALACVYFEKLVLENYVTKTNRKLYMSACLILAVKFNEP 403
[Close]
BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A7S1XW34_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW34_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-9
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    7 GMEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNE 138
            G++++T+A +C Y ERLC    VTK NRR+A AAC+ +AYKFNE
Sbjct:   19 GIDLSTIAFSCCYFERLCHQKCVTKFNRRVAFAACILLAYKFNE 62
[Close]
BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Match: A0A1Z5JZ69_FISSO (Cyclin N-terminal domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ69_FISSO)

HSP 1 Score: 60.1 bits (144), Expect = 2.610e-9
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    4 QGMEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNEP 141
              +E+ TVALAC+Y ERLCL   V K NRRL+ AACL +A K NEP
Sbjct:  602 SNLEIGTVALACVYFERLCLDCRVDKSNRRLSFAACLLLAAKLNEP 647
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162134.3951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD09_9PHAE7.500e-1893.18Cyclin N-terminal domain-containing protein n=1 Ta... [more]
D7G4Y2_ECTSI1.650e-1690.91Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S2RWQ1_9STRA8.690e-1475.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4GBX8_9STRA1.560e-1061.36Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A4D9D598_9STRA1.560e-1063.64Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A835YPH7_9STRA3.990e-1072.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6Y0H5_9STRA1.390e-962.22Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A024TI98_9STRA1.910e-959.09Cyclin N-terminal domain-containing protein n=4 Ta... [more]
A0A7S1XW34_9STRA1.980e-956.82Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1Z5JZ69_FISSO2.610e-960.87Cyclin N-terminal domain-containing protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162134contigH-elongata_contig162134:665..805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7G4Y2
Preferred nameCABLES1
KEGG koko:K09528
GOsGO:0000082,GO:0000278,GO:0002009,GO:0002165,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007049,GO:0007275,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0022402,GO:0030424,GO:0030426,GO:0030427,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033267,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044719,GO:0044770,GO:0044772,GO:0044843,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0051726,GO:0060429,GO:0060562,GO:0065007,GO:0065008,GO:0070013,GO:0090066,GO:0097458,GO:0120025,GO:0120038,GO:0150034,GO:1903047
EggNOG free text desc.regulation of cell cycle
EggNOG OGsKOG4164@1,KOG4164@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko03110
Hectar predicted targeting categorysignal peptide
Exons1
Model size141
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.2804203-UTR-H-elongata_contig162134:664..6731622929949.2804203-UTR-H-elongata_contig162134:664..673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162134 665..673 +
1691679219.8572407-UTR-H-elongata_contig162134:664..6731691679219.8572407-UTR-H-elongata_contig162134:664..673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162134 665..673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.2924075-CDS-H-elongata_contig162134:673..8051622929949.2924075-CDS-H-elongata_contig162134:673..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162134 674..805 +
1691679219.8757913-CDS-H-elongata_contig162134:673..8051691679219.8757913-CDS-H-elongata_contig162134:673..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162134 674..805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162134.3951.1prot_H-elongata_contig162134.3951.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162134 674..805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162134.3951.1

>prot_H-elongata_contig162134.3951.1 ID=prot_H-elongata_contig162134.3951.1|Name=mRNA_H-elongata_contig162134.3951.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MEVATVALACIYLERLCLAGWVTKPNRRLAMAACLAIAYKFNEP
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mRNA from alignment at H-elongata_contig162134:665..805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162134.3951.1 ID=mRNA_H-elongata_contig162134.3951.1|Name=mRNA_H-elongata_contig162134.3951.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig162134:665..805+ (Himanthalia elongata Himel1 dioecious)
ATCCAGGGCATGGAGGTGGCGACCGTGGCGCTGGCGTGCATCTACCTAGA
GCGCCTCTGCCTGGCGGGATGGGTGACGAAGCCGAACCGTCGGTTGGCTA
TGGCGGCCTGCTTGGCGATCGCCTACAAGTTCAACGAACCC
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Coding sequence (CDS) from alignment at H-elongata_contig162134:665..805+

>mRNA_H-elongata_contig162134.3951.1 ID=mRNA_H-elongata_contig162134.3951.1|Name=mRNA_H-elongata_contig162134.3951.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig162134:665..805+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGTGGCGACCGTGGCGCTGGCGTGCATCTACCTAGAGCGCCTCTG
CCTGGCGGGATGGGTGACGAAGCCGAACCGTCGGTTGGCTATGGCGGCCT
GCTTGGCGATCGCCTACAAGTTCAACGAACCCATGGAGGTGGCGACCGTG
GCGCTGGCGTGCATCTACCTAGAGCGCCTCTGCCTGGCGGGATGGGTGAC
GAAGCCGAACCGTCGGTTGGCTATGGCGGCCTGCTTGGCGATCGCCTACA
AGTTCAACGAACCC
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