mRNA_H-elongata_contig16211.3950.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16211.3950.1 vs. uniprot
Match: A0A6H5KK87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK87_9PHAE) HSP 1 Score: 457 bits (1176), Expect = 1.320e-134 Identity = 393/1157 (33.97%), Postives = 544/1157 (47.02%), Query Frame = 1
Query: 1567 VLQVHRVMESLFLLVAQKWAGSLGHP-GPKHAACMRTTVRGVSNGGIAFEEALRLTDIVFCAYERTLVYQHALADRSKDNTHVIAFVACMGVAVDTASMVL-RNRLLRIPSDNNERA---------HALRVRPSFIQESELTKLPQGDNDLHMMKDGVLHFFKEARVGDVAYSDEDHARAERKNSVESAASASTSCLDTILITAIKGDMISWILALYARCSDTPSHYSGEGKVENAPADSTALYRIPERLTGDNAECRATARYVLAEALKSMLHAQGWVNGLHANEVNEGLSLAKKGAVDDGKIDSLSDNIMGCAMTSKR--DALGIALRSWRN---SCGENDETTSLDHHALSLLGTSVDNGNVCKLVVLLISLSPSYLGVLHPHPGCRVDSASKLLRFVKTVSEAVFILNMFSYAI---------------SSRATEDIARFSPLPPALAAAVADLLARFPVAELATSSIPLSSMTISTIVRADGAAFVADWLVACPLLRIRRAMQGLGLPDELRGNENGGRVACLSAASCDDCDRRALTGVLEAVVGRWSAELS-NGLQHSRAEATILRLSSVLLLSPDTFFDLVFTSRHSCLEEGPEAQYKTRATSAQSLGIVIVDTLGEISSALSSVMLRRSEDDITKYDRASKLMCAFQVLQLASAFLDVGCIHGHYASLAANRDNFTPACTPI-SHRLPLEFAFARACGGLLRGLLDPHRSQCGNSEAGICEDGSRDSVLFCALNLFSALIVLSGSRADL-RQSKHDWTLAFEDAHGAIYDVLHSPDMVVDKLGNWVDSAPEMLASFLQVCAIWNVIFSPSGVKVSGGTRLDPPFEVLAEVLRLGCQGPRDMKNTAQRTGRLLKKRRFHTREKGSCVLLQLFAARCVESMAPTKPFSKREVQVLQLSLQDTACIDDAVLTSAALGAIRTLWEAYFGFLQMNELVGQSWNSFVIESCLDTALRLLMTRKDNSTAVDGLLGPGAMGFWADFCLGEGSSQRFGINAAMILSAVGRLVSSSVGKSFPRLRAAIVPDCRSVEVLSLRSLTCVQQCAIFISKELRMTMETWSVHASH--GAEDCIDERYAERGVQPR--RRVGRRLENDLDLVTFHLSDALAQLLGVLKYIE-MPPPRGTRIPGTLRKEVVDALSQVRSTLASSLE 4920
VLQ RV ESL L A++W S G G G G EE++ L D+VF +YERTL YQ L RS++ H +A+++C+G AVD S VL R + R VRPSF+ EL + G + A G V +++++ A + S+ + SCL TIL ++ D++SW+L LYARC S G P+ S+ G AT +L E L+S+LHAQGWVNG+ A+ + M C + + + L+SW S GE + LDH +S LG DNG++CKLVVLL+S+SPS+LGVLHPH GCR+DSA LLR++KTV EAVF LN+FS+ I SSR ED L+AAV DLLARF V E+A S IPLS+ IS + A AFV+DWLVA PL R++RA+ G E +G + ++ S +R AL G+L A + RW E + HS+++A I RL+ VLL+SPDT L F S + P A +L +I +TL +S+ALS V+ R S+ T Y ASKL CA V Q+ASAFL C +G+Y ++ D A T S + P E ARACGGLL+GLL R Q + G S L LNL AL+VL G + L R++ LA +++ A+ ++L S + ++L W+D AP++LA+FLQV A+ RCVE A T F+ +EV LQL+LQ AC L +AA GAI+ LWE+Y G LQ +LVGQSWN F++E L+ ALR L +R S A GLL E F + A +++SA+GRL+ S GK+ RLR + ++E+LS ++ V +C ++ LR+ + +V G + + + R + + E D HL DAL +L+ VL IE + G + RKE++DAL + S L S E
Sbjct: 24 VLQCARVYESL-LHTAEEWVSSQGSTVGGMSCQASANRFGGGGRRGTRGEESVSLADLVFGSYERTLSYQCNLIARSENLAHDVAWLSCLGAAVDATSAVLFHKRXXXXXXXSGGRTSKNGTMGSWQLFNVRPSFVNTQELDRDCVGFPGSGGSR---------ASGGAVGGGEQEYSIAPGEVSIPA------SCLGTILKMVVEADVVSWMLNLYARCGGDRS----SGGTTTHPSRSSEGSSDVVDAHG------ATTCALLMEVLQSLLHAQGWVNGVCAHGAGR------------------PSHEMECGDRGSTFGETVRLMLQSWTTRGVSSGE-EVHMPLDHFVMSQLGKRADNGDLCKLVVLLVSVSPSFLGVLHPHVGCRIDSAVTLLRYIKTVPEAVFCLNLFSHIILVEGDKIDGGRGGELSSRLGED----------LSAAVKDLLARFSVEEVALSLIPLSASAISFALLAGCEAFVSDWLVAAPLARVKRALTEFGAFCERQGATDDDIADLVAGCS----ERVALKGILGATLRRWRVEAGKDSPHHSQSDAVIYRLACVLLMSPDTLLSLAFDS-----DSHPNGPMDLEQELASALATIIPETLEGLSAALSPVVSRHSDRGNTNY-LASKLECASCVSQIASAFLHARCTYGYYTTI----DRDVRARTGFASCQEPPEIPLARACGGLLQGLLRQRRGQGSFGDGG----DSTFKALLSVLNLLGALLVLVGRDSFLLRKTNQGLVLALQESCAALSEMLASTAVATERLTGWLDHAPDVLAAFLQVLAV-----------------------------------------------------------------------RCVEGAAQTGFFNGQEVLALQLALQGIACHGGPTLAAAAHGAIQALWESYSGVLQSADLVGQSWNPFMVECSLENALRSL-SRDQESGAGLGLLPS------------EKDPDEFQVGAPVLVSAIGRLLRWSAGKTCLRLRTSGALAGCNIELLSATAVAAVCRCTALLATNLRIALGDGTVQRDDRLGKRPRLGYQSSSNSSSGRSLKEMAENGEKGGDGERLHLFDALTRLVDVLTCIEPILSQAGLDLRSQARKELLDALVPLHSALVYSRE 1023
BLAST of mRNA_H-elongata_contig16211.3950.1 vs. uniprot
Match: D8LNY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY6_ECTSI) HSP 1 Score: 333 bits (855), Expect = 2.390e-98 Identity = 205/402 (51.00%), Postives = 250/402 (62.19%), Query Frame = 1
Query: 1 MKGEIPDPVGVLVSLASRIVSLGLPRASGHLFLVGQLLTDTSHDPALATILGRACMGNDNAPGD--------GDGSGAR------GCSADTDGVGH-FRGFTLFLAAHCTSTSCPDHVKSDLMYVAMELLDCCTAA---AGVDTQSSSLSP--GSDPFVCVMLAIPRLLSQGYAGDEPLQLHSVAYLAAAVTYCRQRTGLGAPGWCSNAVGVPQVLEDLLTGRRKGRDSQVTSYEIVPLGSG---THRSSSGG-LCTTLKALLMTSSYRVRSATARLVASLC-----GASSPVEPANHDDVIGGSIDDVERFFRETLLAAGATDFLFEAIKTEREGTVRHYLEATEALALSPANFFHASNFSIKFATNVLLGALRGQESSGGASKCWGEFEDRKACSNEDED 1119
+K E+PDPV VL SL S VSLGLPRASGHL+LVG+LL + S+D ALA LG +C G + G GD SG G +T G RGF FLAA STSC DH KSD+++VA+ELLDCCTA AG+ Q + P G DPFV +MLA+PRLL++ + DE LQLH +AYLA YCRQRT +G PGW SN GVP VL +L G R + T E++P G G + +S SGG LC+TLK LLM+SSYRVRSATARL+ SLC G S E A+ + +G + FFRE LLAAG+TDFLFEAIK+EREG+ R+YLEA +A A SP FFHA NF +KFA +LL A RG + C E DR S D++
Sbjct: 24 LKDELPDPVAVLTSLISSTVSLGLPRASGHLYLVGKLLANASYDRALAATLGNSCFGRRDGHGQRQQQTLVIGDRSGQGIVPSHGGSGVETRDEGEELRGFGAFLAAQALSTSCSDHTKSDVLFVALELLDCCTAVCMGAGIAPQGPLMPPPPGGDPFVSIMLALPRLLARRSSSDELLQLHGIAYLATVARYCRQRTEMGVPGWSSNRDGVPDVLAELFEGAR-----EATPREVLPTGGGGEGSKQSFSGGMLCSTLKTLLMSSSYRVRSATARLITSLCRDVPFGEDS--ELAHENAAMGSRRNGSSLFFREILLAAGSTDFLFEAIKSEREGSTRYYLEAADAFASSPVEFFHADNFCMKFAAPILLDAFRG------GTACGPEPYDRAGGSRSDDE 412
BLAST of mRNA_H-elongata_contig16211.3950.1 vs. uniprot
Match: D8LNY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY5_ECTSI) HSP 1 Score: 226 bits (575), Expect = 6.480e-60 Identity = 190/548 (34.67%), Postives = 267/548 (48.72%), Query Frame = 1
Query: 1567 VLQVHRVMESLFLLVAQKWAGSLGHPGPKHAACMRTTVRGVS-------------------NGGIAFEEALRLTDIVFCAYERTLVYQHALADRSKDNTHVIAFVACMGVAVDTASMVLRNRLLRIP--------SDNNERA--HALRVRPSFIQESELTKLPQGDNDLHMMKDGVLHFFKEARVGDVAYSDEDHARAERKNSVESAASASTSCLDTILITAIKGDMISWILALYARCSDTPSHYSGEGKVENAPADSTALYRIPERLTGDNAECRATARYVLAEALKSMLHAQGWVNGLHANEVNEGLSLAKKGAVDDGKIDSLSDNIMGCAMTSKRDALGIALRSW--RNSCGENDETTSLDHHALSLLGTSVDNGNVCKLV---------------VLLISLSPSYLGVLHPHPGCRVDSASKLLRFVKTVSEAVFILNMFSYAI---------------SSRATEDIARFSPLPPALAAAVADLLARFPVAELATSSIPLSSMTISTIVRADGAAFVADWLVACPLLRIRRAMQGLGLPDELRG 3027
VLQ RV ESL L A++W S G +TV G S G EE++ L D+VF +YERTL YQ L +S++ TH +A+++C+G AVD S VL ++ R S N L VRPSF+ EL + G + A G V +++++ A + S+ + SCL+TIL ++ D++SW+L LYA+C S SG +T + ER + AT +L E L+S+L AQGWVNG+ A+ + + G G+ ++ + + + L+SW R G + LD H +S LG DNG++CKLV VLL+S+SPS+LGVLHPH GCR+DSA LLR++KT+ EAVF LN+FS+ + SSR +ED L+AAV DLLARF V E+A S IPLS+ IS + A AFV++WLVA PL R++RA+ G E +G
Sbjct: 24 VLQCARVYESL-LHTAEEWVSSQG-----------STVGGTSCQASAXXXXXXXXXXXXXXRRGFRGEESVGLADLVFSSYERTLSYQCNLIAQSENLTHDVAWLSCLGAAVDATSAVLFHKRRREEAAARGGRTSKNGTMGSWQLLNVRPSFVNTQELDRDCSGGSG--------------ASGGAVGGGEQEYSIAPGEVSIPA------SCLETILKVVVEADVVSWMLDLYAQCGGDTS--SG--------GTTTHSSQSSERSSDVVDAHGATTCALLMEVLQSLLDAQGWVNGVCAHGADRPSYEMECG----GRGPTIGETVR------------LMLQSWTTRGVSGAEEVHMPLDQHVMSQLGKRADNGDLCKLVWWYRGRYNRVEAKQKVLLVSVSPSFLGVLHPHVGCRIDSAVTLLRYIKTLPEAVFCLNLFSHIVLVEGDKIDGGRGGELSSRLSED----------LSAAVKDLLARFSVEEVALSLIPLSASAISFALLAGCEAFVSNWLVAAPLARVKRALTEFGAFCERQG 503 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16211.3950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16211.3950.1 >prot_H-elongata_contig16211.3950.1 ID=prot_H-elongata_contig16211.3950.1|Name=mRNA_H-elongata_contig16211.3950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1640bp MKGEIPDPVGVLVSLASRIVSLGLPRASGHLFLVGQLLTDTSHDPALATIback to top mRNA from alignment at H-elongata_contig16211:399..6821+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16211.3950.1 ID=mRNA_H-elongata_contig16211.3950.1|Name=mRNA_H-elongata_contig16211.3950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6423bp|location=Sequence derived from alignment at H-elongata_contig16211:399..6821+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16211:399..6821+ >mRNA_H-elongata_contig16211.3950.1 ID=mRNA_H-elongata_contig16211.3950.1|Name=mRNA_H-elongata_contig16211.3950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=9840bp|location=Sequence derived from alignment at H-elongata_contig16211:399..6821+ (Himanthalia elongata Himel1 dioecious)back to top |