mRNA_H-elongata_contig162100.3949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162100.3949.1
Unique NamemRNA_H-elongata_contig162100.3949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162100.3949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162100contigH-elongata_contig162100:18..622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size492
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162100.3949.1prot_H-elongata_contig162100.3949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162100 18..392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.038055-CDS-H-elongata_contig162100:17..2471622929949.038055-CDS-H-elongata_contig162100:17..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162100 18..247 -
1691679219.7696056-CDS-H-elongata_contig162100:17..2471691679219.7696056-CDS-H-elongata_contig162100:17..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162100 18..247 -
1622929949.0737104-CDS-H-elongata_contig162100:361..3921622929949.0737104-CDS-H-elongata_contig162100:361..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162100 362..392 -
1691679219.7779746-CDS-H-elongata_contig162100:361..3921691679219.7779746-CDS-H-elongata_contig162100:361..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162100 362..392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.0862699-UTR-H-elongata_contig162100:392..6221622929949.0862699-UTR-H-elongata_contig162100:392..622Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162100 393..622 -
1691679219.7869608-UTR-H-elongata_contig162100:392..6221691679219.7869608-UTR-H-elongata_contig162100:392..622Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162100 393..622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162100.3949.1

>prot_H-elongata_contig162100.3949.1 ID=prot_H-elongata_contig162100.3949.1|Name=mRNA_H-elongata_contig162100.3949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MLARDGPLVPARVKRSLCWVRLSYLPFLDYCPHLKHKSAIGCNVNIRILC
RYEKGQFIGCYWTVLIYSASTRPPHSSPSGCGKTEAY
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mRNA from alignment at H-elongata_contig162100:18..622-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162100.3949.1 ID=mRNA_H-elongata_contig162100.3949.1|Name=mRNA_H-elongata_contig162100.3949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=605bp|location=Sequence derived from alignment at H-elongata_contig162100:18..622- (Himanthalia elongata Himel1 dioecious)
AACCAAATCCAGTTGATTCTTACTTTGATATGTGTTAATAGACCACACAA
TATTTCTTATGGCTCGCGTATAAAAAATCACGCCTTTCGCGACTCGCTTA
CAACAACATCGACCTTTGGCGCCCGTGATTGCGCCACCTGTGTAAAATGC
TTCCATACGCATGCGGCGGAGATGGACCATAGCGACATCGGGAGAATAAA
GCTGTACAGCCCCCTGCGTTAGCCGCAGTCATGTTGGCCCGAGACGGCCC
TTTAGTTCCGGGCGAGATGGACGAAAGGTGAGGCGTGAGCGCCACTGAGG
TAGCAATGCATCAAGCCACCGATCGTTAGTTCAGCGTCGACATAATTCCT
CTCTACCGCCTAAGACTGCTGGCAGCCAGGGTTAAGAGGTCACTATGCTG
GGTTAGGCTAAGTTATCTCCCTTTCTTAGATTACTGCCCGCATCTCAAAC
ATAAAAGTGCAATAGGATGCAACGTGAACATCCGCATATTATGTCGTTAC
GAAAAAGGGCAGTTCATCGGATGCTACTGGACTGTTTTGATCTACTCCGC
CTCAACCAGACCCCCCCACTCTTCCCCTAGTGGGTGTGGGAAAACAGAGG
CGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig162100:18..622-

>mRNA_H-elongata_contig162100.3949.1 ID=mRNA_H-elongata_contig162100.3949.1|Name=mRNA_H-elongata_contig162100.3949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig162100:18..622- (Himanthalia elongata Himel1 dioecious)
ATGTTGGCCCGAGACGGCCCTTTAGTTCCGGATGTTGGCCCGAGACGGCC
CTTTAGTTCCGGCCAGGGTTAAGAGGTCACTATGCTGGGTTAGGCTAAGT
TATCTCCCTTTCTTAGATTACTGCCCGCATCTCAAACATAAAAGTGCAAT
AGGATGCAACGTGAACATCCGCATATTATGTCGTTACGAAAAAGGGCAGT
TCATCGGATGCTACTGGACTGTTTTGATCTACTCCGCCTCAACCAGACCC
CCCCACTCTTCCCCTAGTGGGTGTGGGAAAACAGAGGCGTACCCAGGGTT
AAGAGGTCACTATGCTGGGTTAGGCTAAGTTATCTCCCTTTCTTAGATTA
CTGCCCGCATCTCAAACATAAAAGTGCAATAGGATGCAACGTGAACATCC
GCATATTATGTCGTTACGAAAAAGGGCAGTTCATCGGATGCTACTGGACT
GTTTTGATCTACTCCGCCTCAACCAGACCCCCCCACTCTTCCCCTAGTGG
GTGTGGGAAAACAGAGGCGTAC
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