mRNA_H-elongata_contig161951.3945.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161951.3945.1
Unique NamemRNA_H-elongata_contig161951.3945.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A6H5L9E1_9PHAE (Calmodulin-lysine N-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9E1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.540e-36
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 GRTPVTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEAAEVVITDGNPDAVENLQ 267
            G   VTL+QLF HR+HGVDNTGNVRVWP+E VLLH LL+ PLA SL G RVLELGAG  GLAGLGVA   +AAEVVITDGNPDA+ NL+
Sbjct:  111 GGVTVTLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLSSPLASSLGGMRVLELGAGMSGLAGLGVAACLDAAEVVITDGNPDALRNLE 199
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: D8LSL3_ECTSI (Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.490e-33
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 GRTPVTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEAAEVVITDGNPDAVENLQ 267
            G   +TL+QLF HR+HGVDNTGNVRVWP+E VLLH LL+ PLA SL G RVLELGAG  GLAGLGVA  S+A EVVITDGNPDA+  L+
Sbjct:  111 GGVTITLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLSSPLASSLGGMRVLELGAGMSGLAGLGVAACSDAGEVVITDGNPDALRTLE 199
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A835Z8K9_9STRA (Calmodulin-lysine N-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8K9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.430e-20
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    4 RTPVTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEAAE--VVITDGNPDAV 255
            R   TL ++F HR+HGVDNTGNVRVWPSE +LLH L++ P A    GARVLE+G G   LAGLGVA A+      VV+TDG+PDAV
Sbjct:  173 RRRTTLAEIFSHRVHGVDNTGNVRVWPSESLLLHHLVSTPGAIPA-GARVLEIGGGMTALAGLGVAAAAGCRVRCVVVTDGHPDAV 257
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A7S0SXK0_9STRA (Calmodulin-lysine N-methyltransferase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXK0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.150e-14
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   13 VTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEAAEVVITDGNPDAVEN 261
            ++ E +  ++LHG+DNTGNV +WPSE +LL+ LL+   +  +K   +LELG G   L GLG+A ++    + ITDG+P+ V N
Sbjct:   64 ISKEGILSNKLHGIDNTGNVCIWPSESILLYILLSN-YSQYIKDKDILELGGGNTALCGLGLAASNLCHSITITDGHPNCVNN 145
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A485KFB5_9STRA (Calmodulin-lysine N-methyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFB5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.830e-14
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   13 VTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGP--LACSLKGARVLELGAGKCGLAGLGVAVASEA-AEVVITDGNPDAVENLQ 267
            V++++L    +H VDNTGN+R WP E VL H LL  P  L+ S    R+LE+GAG CG+AGL +A      + VV+TDGN   VENL+
Sbjct:   81 VSIQELA---IHAVDNTGNIRTWPCEDVLWHTLLHSPSILSNSAPPMRLLEIGAGMCGVAGLALAAQLRTLSHVVLTDGNAACVENLR 165
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A067C6A6_SAPPC (Calmodulin-lysine N-methyltransferase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C6A6_SAPPC)

HSP 1 Score: 73.9 bits (180), Expect = 9.190e-14
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   13 VTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEA-AEVVITDGNPDAVENL 264
            V+L +L    +  VDNTGN+R WPSE + L  LL    + +   ARVLELGAG CG+AG  +A A +A A V ITDGNP  VENL
Sbjct:   83 VSLRELA---IRDVDNTGNIRTWPSEDIALRYLLRTLPSRTGGPARVLELGAGMCGVAGFALAAACDALASVTITDGNPMCVENL 164
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A2D4BJ23_PYTIN (Calmodulin-lysine N-methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ23_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 9.940e-14
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   13 VTLEQLFCHRLH-GVDNTGNVRVWPSEQVLLHALL--------AGPLACSLKGARVLELGAGKCGLAGLGVAVASEAA---EVVITDGNPDAVENLQ 267
            V+L +LF H+L+ GVDNTGN+R WPSE +LL  LL        A   A S +  R  ELG+G  G+ GLG+ +A E A    ++ITDGNP AV NLQ
Sbjct:  110 VSLAELFSHQLNNGVDNTGNIRTWPSEPILLSYLLKNNVCRQLADAHAPSRRAIRCCELGSGMAGVVGLGL-MAHEGALIDSMLITDGNPSAVRNLQ 205
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A7S0N9F6_9CHLO (Calmodulin-lysine N-methyltransferase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N9F6_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 7.790e-13
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   19 LEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEAAEVVITDGNPDAVENLQ 267
            LE L     + +DNTG + +WP+E+VL H       A   +G RVLELGAG  GLAGL +A    AAEVV+TDGNP AVE LQ
Sbjct:   14 LEDLRVANDNKIDNTGVICLWPAEEVLTHYCTVN--AEQFRGCRVLELGAG-VGLAGLALAAMGTAAEVVLTDGNPTAVEMLQ 93
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BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: A0A0M3I3L4_ASCLU (Calmodulin-lysine N-methyltransferase n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3I3L4_ASCLU)

HSP 1 Score: 71.6 bits (174), Expect = 1.300e-12
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   43 LHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEAAEVVITDGNPDAVENLQ 267
            L G DNTGNVR+WP+E+ L   LL     C  +G RVLELGAG  GLAGL +A+ S A  V +TDGN  +VENL+
Sbjct:  122 LVGYDNTGNVRLWPAEECLAQYLLLNDAVC--RGKRVLELGAGMTGLAGL-MALTSGAKSVCLTDGNERSVENLR 193
[Close]
BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Match: F2U9X9_SALR5 (Calmodulin-lysine N-methyltransferase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U9X9_SALR5)

HSP 1 Score: 70.9 bits (172), Expect = 1.620e-12
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    4 RTPVTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGARVLELGAGKCGLAGLGVAVASEAAEVVITDGNPDAV 255
            R  VTL+ +      G +NTGNV +WPSE+VL+H +L+ P     KG RV E+G G   LAGL VA+  +A EVV+TDGN +++
Sbjct:  114 RPVVTLQDML-----GFNNTGNVCIWPSEEVLVHWILSQPGV--FKGLRVCEIGGGMASLAGLAVAINEQAEEVVLTDGNENSM 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161951.3945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9E1_9PHAE1.540e-3674.16Calmodulin-lysine N-methyltransferase n=1 Tax=Ecto... [more]
D8LSL3_ECTSI2.490e-3371.91Phosphoribulokinase/uridine kinase family protein ... [more]
A0A835Z8K9_9STRA1.430e-2060.47Calmodulin-lysine N-methyltransferase n=1 Tax=Trib... [more]
A0A7S0SXK0_9STRA2.150e-1443.37Calmodulin-lysine N-methyltransferase (Fragment) n... [more]
A0A485KFB5_9STRA7.830e-1448.86Calmodulin-lysine N-methyltransferase n=1 Tax=Apha... [more]
A0A067C6A6_SAPPC9.190e-1452.94Calmodulin-lysine N-methyltransferase n=1 Tax=Sapr... [more]
A0A2D4BJ23_PYTIN9.940e-1449.48Calmodulin-lysine N-methyltransferase n=1 Tax=Pyth... [more]
A0A7S0N9F6_9CHLO7.790e-1353.01Calmodulin-lysine N-methyltransferase (Fragment) n... [more]
A0A0M3I3L4_ASCLU1.300e-1256.00Calmodulin-lysine N-methyltransferase n=1 Tax=Asca... [more]
F2U9X9_SALR51.620e-1247.62Calmodulin-lysine N-methyltransferase n=1 Tax=Salp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161951contigH-elongata_contig161951:147..920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.8e-28
Seed eggNOG ortholog2880.D8LSL3
Preferred nameCAMKMT
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K18826,ko:K21804
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008277,GO:0008757,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016043,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018025,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031072,GO:0031323,GO:0031326,GO:0032101,GO:0032259,GO:0032268,GO:0032991,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.calmodulin-lysine N-methyltransferase activity
EggNOG OGsCOG1072@1,KOG2702@2759,KOG3201@1,KOG3201@2759
EC2.1.1.60
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.7814066-CDS-H-elongata_contig161951:146..2651622929948.7814066-CDS-H-elongata_contig161951:146..265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161951 147..265 +
1691679219.7079542-CDS-H-elongata_contig161951:146..2651691679219.7079542-CDS-H-elongata_contig161951:146..265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161951 147..265 +
1622929948.8003485-CDS-H-elongata_contig161951:772..9201622929948.8003485-CDS-H-elongata_contig161951:772..920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161951 773..920 +
1691679219.7236006-CDS-H-elongata_contig161951:772..9201691679219.7236006-CDS-H-elongata_contig161951:772..920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161951 773..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161951.3945.1prot_H-elongata_contig161951.3945.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161951 147..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161951.3945.1

>prot_H-elongata_contig161951.3945.1 ID=prot_H-elongata_contig161951.3945.1|Name=mRNA_H-elongata_contig161951.3945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GRTPVTLEQLFCHRLHGVDNTGNVRVWPSEQVLLHALLAGPLACSLKGAR
VLELGAGKCGLAGLGVAVASEAAEVVITDGNPDAVENLQ
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mRNA from alignment at H-elongata_contig161951:147..920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161951.3945.1 ID=mRNA_H-elongata_contig161951.3945.1|Name=mRNA_H-elongata_contig161951.3945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig161951:147..920+ (Himanthalia elongata Himel1 dioecious)
GGAAGGACTCCCGTGACCCTCGAACAGCTCTTCTGTCACCGTCTTCATGG
CGTTGACAACACCGGCAACGTCCGCGTTTGGCCGTCGGAGCAAGTCCTGC
TACACGCGCTGCTTGCCGGGTCAGTGCCCCCCTTCCGTCCCCCCTCCCCC
TCCTNNNNNNNNNNGCGGAAAATTCCTGGAAGGCGGCGAATTTTTACGAG
GTTCTGCCGTTTCTCAACAGCACCCGCTACTATTAATACTATTATTAATA
TGAATACTAGAAATCCCAAATTATTTTACACTATTTTGTCCCCCGTGTCT
GTCTGGCTTTCTCTCGCTCTATATGATACTATATGATATAAAGGGTAACA
AAGGAGTGCGGGGTGTGTGGGGGGTGCCGTTGCTCTCCGAACCCCGTCCC
GCGTCCCGCCTCCTCAACATCAATGGGTTTTGTGTCTTCGTGGGATAAAC
GTACTCGGCGACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCT
TCTTTTTGTTACTATTCAGACCGCTAGCCTGTTCTTTGAAAGGAGGGCGG
TGGGATAAACGTACTCGGCGACACTTTTTTTTTTTTTTTACATCCCCTGT
TTTGTCTTCTATTGGTCACGATGCAGACCGCTAGCCTGCTCCTTGAAAGG
AGCGCGGGTGCTCGAGCTGGGCGCGGGCAAGTGCGGCCTGGCGGGGCTTG
GTGTGGCCGTAGCCTCGGAGGCGGCCGAGGTCGTGATCACCGACGGCAAT
CCGGACGCCGTCGAAAACCTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig161951:147..920+

>mRNA_H-elongata_contig161951.3945.1 ID=mRNA_H-elongata_contig161951.3945.1|Name=mRNA_H-elongata_contig161951.3945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig161951:147..920+ (Himanthalia elongata Himel1 dioecious)
GGAAGGACTCCCGTGACCCTCGAACAGCTCTTCTGTCACCGTCTTCATGG
CGTTGACAACACCGGCAACGTCCGCGTTTGGCCGTCGGAGCAAGTCCTGC
TACACGCGCTGCTTGCCGGGGAAGGACTCCCGTGACCCTCGAACAGCTCT
TCTGTCACCGTCTTCATGGCGTTGACAACACCGGCAACGTCCGCGTTTGG
CCGTCGGAGCAAGTCCTGCTACACGCGCTGCTTGCCGGACCGCTAGCCTG
CTCCTTGAAAGGAGCGCGGGTGCTCGAGCTGGGCGCGGGCAAGTGCGGCC
TGGCGGGGCTTGGTGTGGCCGTAGCCTCGGAGGCGGCCGAGGTCGTGATC
ACCGACGGCAATCCGGACGCCGTCGAAAACCTCCAGACCGCTAGCCTGCT
CCTTGAAAGGAGCGCGGGTGCTCGAGCTGGGCGCGGGCAAGTGCGGCCTG
GCGGGGCTTGGTGTGGCCGTAGCCTCGGAGGCGGCCGAGGTCGTGATCAC
CGACGGCAATCCGGACGCCGTCGAAAACCTCCAG
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