mRNA_H-elongata_contig161881.3941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161881.3941.1
Unique NamemRNA_H-elongata_contig161881.3941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: D8LTD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.500e-39
Identity = 70/111 (63.06%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    1 MASLLTRTTLSDDSIRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWLFPFVLLFGQ 333
            MA L   TTLS+   RS++ LRG LP +HRVTAWK+LLRLPGNS  F  L+SRGP  T +AS + R P+  RKLFRK  +LLSALAHWSPI AEVEF   WLFPF ++FGQ
Sbjct:    1 MAYLFETTTLSEHDFRSMLHLRGGLPVEHRVTAWKFLLRLPGNSKQFAQLVSRGPHPTALASLSIRYPLRDRKLFRKAAVLLSALAHWSPILAEVEFVPSWLFPFCVVFGQ 111
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A836CHE3_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHE3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.440e-16
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:   43 IRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWLFPFVLLF 327
            +R+L+R  G+ P+ HR  AW+ LL LP N AAF  L +RGP        A R P+ SR+   K   L SALAHWSP++ E E     +FPF+  F
Sbjct:   60 LRALLRAHGAFPAPHRPLAWRLLLSLPRNRAAFAALTARGPHAAAARHIAQRFPLRSRRDAAKLTALASALAHWSPVFGEAENVPAVVFPFLRAF 154
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A397CIE9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CIE9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.520e-15
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   43 IRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWL-FPFV 318
            ++ L+R  G  P  +R+ AWKYLLRLP N+AA   L+++G   T  A      P+ + +LFR+   +LSALAHW P++ E    +P L FPFV
Sbjct:   16 LQHLLRSYGRFPEKYRLLAWKYLLRLPNNTAALEQLMAKGSHATT-ARLRDLYPIQNTRLFRRLERVLSALAHWCPVYGEATSIVPALVFPFV 107
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A5A8D903_CAFRO (TBC1 domain family member 31 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D903_CAFRO)

HSP 1 Score: 80.1 bits (196), Expect = 4.650e-14
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:   22 TTLSDDSIRSLI-RLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWLFPFVLL 324
            + ++D S+R+L+ R  G+ P D R+ AW++LLRLPGN+ AFHDL S G Q         R P+ SR+L       +S LAHW P  A+  +   ++FPFV L
Sbjct:  925 SAVTDASLRALLQRGGGAFPDDQRLLAWRFLLRLPGNARAFHDLRSAG-QHPAFDDLGDRFPMRSRRLLSALQDTVSVLAHWCPALADAPWLPNFVFPFVKL 1025
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A3R7WQ68_9STRA (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WQ68_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 9.060e-14
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   43 IRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWL-FPFV 318
            ++ L+R  G  P  +R+ AWKY+LRLP N+AA   L+++G   T  A      P+ + +LFR+   +LSALAHW P++ E    +P L FPFV
Sbjct:   16 LQHLLRSYGRFPEKYRLLAWKYMLRLPNNTAALEQLMAKGSHATT-ARLRDLYPIQNTRLFRRLERVLSALAHWCPVYGEATSIVPALVFPFV 107
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A6A5B309_9STRA (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B309_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.030e-13
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   43 IRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWL-FPFV 318
            ++ L+R  G  P  +R+ AWKY+LRLP N+AA   L+++G   T  A      P+ + +LFR+   +LSALAHW P++ E    +P L FPFV
Sbjct:  100 LQHLLRSYGRFPEKYRLLAWKYMLRLPNNTAALEQLMAKGSHATT-ARLRDLYPIQNTRLFRRLERVLSALAHWCPVYGEATSIVPALVFPFV 191
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A397F5N5_9STRA (Rab-GAP TBC domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F5N5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.090e-13
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   43 IRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWL-FPFV 318
            ++ L+R  G  P  +R+ AWKYLLRLP N+AA   L+++G   T  A      P+ + +LFR+   +LSALAHW P++ E    +P L FPFV
Sbjct:   16 LQHLLRSYGRFPEKYRLLAWKYLLRLPNNTAALEQLMAKGSHATT-ARLRDLYPIQNIRLFRRLERVLSALAHWCPVYGEATSIVPALVFPFV 107
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: W4FZP9_9STRA (TBC1 domain family member 31 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZP9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.150e-13
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   43 IRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWL-FPFV 318
            ++ L+R  G  P  +R+ AWKY+LRLP N+AA   L+++G   T  A      P+ + +LFR+   +LSALAHW P++ E    +P L FPFV
Sbjct:  450 LQHLLRSYGRFPEKYRLLAWKYMLRLPNNTAALEQLMAKGSHATT-ARLRDLYPIQNTRLFRRLERVLSALAHWCPVYGEATSIVPALVFPFV 541
[Close]
BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A024TWH7_9STRA (TBC1 domain family member 31 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWH7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.130e-13
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   25 TLSDDSIRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWLFPFV 318
            T+    ++ L+R  G  P  +R+ AWKY+LRLP N+AAF  L+++G   T         P+ +++LFR+   +LSALAHW P++ E+       FPFV
Sbjct:  460 TVQHRRLQQLLRSYGRFPEKYRLLAWKYILRLPINTAAFEQLVAKGNHSTTTR-LHDLYPIQNQRLFRRLKRILSALAHWCPVYGELTTVPALAFPFV 556
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BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Match: A0A7K9SR47_9AVES (TBC1 domain family member 31 (Fragment) n=1 Tax=Galbula dea TaxID=1109041 RepID=A0A7K9SR47_9AVES)

HSP 1 Score: 77.0 bits (188), Expect = 5.200e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   28 LSDDSIRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDLLSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIPWLFPFVLLF 327
            LS + +R+L++  G  P+ +R+  W+ LL+LP N  AF +L+ +G     V +     P+ SRKL R     LSALAHWS I+AE  +     FPFV LF
Sbjct:  410 LSKERLRALLKGFGEYPAKYRMLVWRSLLQLPENHLAFSNLIDKGTHSAFV-NIQKEYPIKSRKLLRVLQRTLSALAHWSAIFAETSYIALLAFPFVKLF 508
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161881.3941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD1_ECTSI3.500e-3963.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHE3_9STRA9.440e-1644.21Rab-GAP TBC domain-containing protein n=1 Tax=Trib... [more]
A0A397CIE9_9STRA2.520e-1543.01Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A5A8D903_CAFRO4.650e-1442.16TBC1 domain family member 31 n=2 Tax=Cafeteria roe... [more]
A0A3R7WQ68_9STRA9.060e-1441.94Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A6A5B309_9STRA1.030e-1341.94Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A397F5N5_9STRA1.090e-1343.01Rab-GAP TBC domain-containing protein n=6 Tax=Apha... [more]
W4FZP9_9STRA1.150e-1341.94TBC1 domain family member 31 n=2 Tax=Aphanomyces a... [more]
A0A024TWH7_9STRA2.130e-1338.78TBC1 domain family member 31 n=2 Tax=Aphanomyces i... [more]
A0A7K9SR47_9AVES5.200e-1341.00TBC1 domain family member 31 (Fragment) n=1 Tax=Ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161881contigH-elongata_contig161881:493..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D8LTD1
Preferred nameTBC1D31
GOsGO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0008047,GO:0008150,GO:0015630,GO:0030234,GO:0030695,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsKOG1093@1,KOG1093@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size577
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.3283632-CDS-H-elongata_contig161881:492..8341622929948.3283632-CDS-H-elongata_contig161881:492..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161881 493..834 +
1691679219.5435688-CDS-H-elongata_contig161881:492..8341691679219.5435688-CDS-H-elongata_contig161881:492..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161881 493..834 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.345782-UTR-H-elongata_contig161881:834..10691622929948.345782-UTR-H-elongata_contig161881:834..1069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161881 835..1069 +
1691679219.5534563-UTR-H-elongata_contig161881:834..10691691679219.5534563-UTR-H-elongata_contig161881:834..1069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161881 835..1069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161881.3941.1prot_H-elongata_contig161881.3941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161881 493..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161881.3941.1

>prot_H-elongata_contig161881.3941.1 ID=prot_H-elongata_contig161881.3941.1|Name=mRNA_H-elongata_contig161881.3941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MASLLTRTTLSDDSIRSLIRLRGSLPSDHRVTAWKYLLRLPGNSAAFHDL
LSRGPQQTVVASFASREPVCSRKLFRKTVILLSALAHWSPIWAEVEFAIP
WLFPFVLLFGQVN*
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mRNA from alignment at H-elongata_contig161881:493..1069+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161881.3941.1 ID=mRNA_H-elongata_contig161881.3941.1|Name=mRNA_H-elongata_contig161881.3941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=577bp|location=Sequence derived from alignment at H-elongata_contig161881:493..1069+ (Himanthalia elongata Himel1 dioecious)
ATGGCATCTCTACTCACACGAACCACTCTGAGTGACGATAGCATTCGGTC
GCTCATCCGGCTACGTGGGAGCCTGCCATCGGATCACCGAGTTACGGCAT
GGAAGTATCTTCTTCGGCTCCCGGGTAATTCAGCGGCTTTCCACGACCTG
CTCTCTCGTGGGCCACAGCAGACGGTGGTAGCCAGCTTCGCCTCGAGGGA
ACCCGTCTGCAGCAGGAAGCTATTCCGGAAGACGGTAATCTTATTGTCGG
CGCTGGCTCACTGGTCGCCGATCTGGGCGGAGGTTGAATTTGCTATACCA
TGGCTGTTCCCCTTCGTGCTACTGTTTGGACAGGTGAACTGAAAGGAGTC
GCGGAGGAGGGAAAAATCATAATAAATAATAATCCCGTTACTGGTTTTTA
CTTACCTACGTATTTACGGCGTATGCGTGTGTGGCGATCACATATAGCCA
CCAGGTATATAGCAGGGTTAGGATGAACCGAATTTGATTGCCTCCTGCTC
GTGGTCAGCTAACAGAAAATGAATTTTCCCTGTCCCCGTTCGCGCCTTAG
AATTTGGCTTCGCGAGACAGATTCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig161881:493..1069+

>mRNA_H-elongata_contig161881.3941.1 ID=mRNA_H-elongata_contig161881.3941.1|Name=mRNA_H-elongata_contig161881.3941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig161881:493..1069+ (Himanthalia elongata Himel1 dioecious)
ATGGCATCTCTACTCACACGAACCACTCTGAGTGACGATAGCATTCGGTC
GCTCATCCGGCTACGTGGGAGCCTGCCATCGGATCACCGAGTTACGGCAT
GGAAGTATCTTCTTCGGCTCCCGGGTAATTCAGCGGCTTTCCACGACCTG
CTCTCTCGTGGGCCACAGCAGACGGTGGTAGCCAGCTTCGCCTCGAGGGA
ACCCGTCTGCAGCAGGAAGCTATTCCGGAAGACGGTAATCTTATTGTCGG
CGCTGGCTCACTGGTCGCCGATCTGGGCGGAGGTTGAATTTGCTATACCA
TGGCTGTTCCCCTTCGTGCTACTGTTTGGACAGGTGAACTGAATGGCATC
TCTACTCACACGAACCACTCTGAGTGACGATAGCATTCGGTCGCTCATCC
GGCTACGTGGGAGCCTGCCATCGGATCACCGAGTTACGGCATGGAAGTAT
CTTCTTCGGCTCCCGGGTAATTCAGCGGCTTTCCACGACCTGCTCTCTCG
TGGGCCACAGCAGACGGTGGTAGCCAGCTTCGCCTCGAGGGAACCCGTCT
GCAGCAGGAAGCTATTCCGGAAGACGGTAATCTTATTGTCGGCGCTGGCT
CACTGGTCGCCGATCTGGGCGGAGGTTGAATTTGCTATACCATGGCTGTT
CCCCTTCGTGCTACTGTTTGGACAGGTGAACTGA
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