mRNA_H-elongata_contig161714.3937.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: D7FX13_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX13_ECTSI) HSP 1 Score: 159 bits (403), Expect = 5.410e-47 Identity = 73/95 (76.84%), Postives = 86/95 (90.53%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVVYLLYAYILFAFATAAPKLYLHMLRQRKKQL 285
RYPFYAL+IA MCPP L+W+RY+AF++LYPLGFA ELGTWIVGLPH+KA+GLP + PGLP GS +Y+LYAYI+FAFA APKLY+HMLRQRKKQL
Sbjct: 135 RYPFYALNIAGMCPPVLQWLRYSAFVLLYPLGFAGELGTWIVGLPHIKAVGLPGV-PGLPEGSSIYVLYAYIVFAFAIGAPKLYMHMLRQRKKQL 228
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A835Z8Y0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y0_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.700e-23 Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVVYLLYAYILFAFATAAPKLYLHMLRQRKKQLAPP 294
RYP+YA ++ +CP L W+RY+AF++LYPLGFA+E+G ++V PHMKA G + GLP G +L AY+LFA A A L+ +ML+ RK+QL P
Sbjct: 89 RYPYYATNLLEICPDFLHWLRYSAFMLLYPLGFAAEVGCFVVAYPHMKA-GDKYRIEGLPEGGQFAVLGAYMLFAHAIGALTLFKYMLKARKRQLRQP 185
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A6I8PHZ0_ORNAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Monotremata TaxID=9255 RepID=A0A6I8PHZ0_ORNAN) HSP 1 Score: 77.8 bits (190), Expect = 5.260e-15 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAY-ILFAFATAAPKLYLHMLRQRKKQLAPPREADKAK 315
RY FY S+ P +KW RYT FI LYP+G EL T LP ++ GL ++ LP S Y + ++F++ P+LY HMLRQR+K LAPP K++
Sbjct: 150 RYSFYTFSLLDHLPYLIKWTRYTLFIALYPMGVTGELLTIYAALPFVRRAGLYSVSLPNKYNFSFDYHAFLILVMFSYIPLFPQLYFHMLRQRRKLLAPPEGPKKSE 256
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: W5M3L3_LEPOC (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M3L3_LEPOC) HSP 1 Score: 77.4 bits (189), Expect = 6.840e-15 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAYI-LFAFATAAPKLYLHMLRQRKKQLAPPREADKAK 315
RY FY S+ P +KW RYT FIVLYP+G EL T LP+++ G+ ++ LP S Y + + + ++ P+LY HMLRQRKK LAP KA+
Sbjct: 145 RYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVTGELLTIYAALPYVRETGMYSIRLPNKFNFSFDYYTFLILTMVSYIPLFPQLYFHMLRQRKKVLAPAEGYSKAE 251
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A7S1B590_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B590_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.030e-14 Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVVYLLYAYILFAFATAAPKLYLHMLRQRKKQL 285
RYPFYA S+ CP L+W+RY+ FIV YPLGF SE+G I K + G + +L+ +Y+ + P+LY +M RQR+K L
Sbjct: 119 RYPFYATSVGGFCPKFLQWLRYSQFIVFYPLGFVSEIGVIIAATIKKKQ--------NMFGIDIRWLIASYLFIIYGYYGPQLYWYMFRQRRKSL 205
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A8J7TJ93_ATRSP (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7TJ93_ATRSP) HSP 1 Score: 77.4 bits (189), Expect = 1.630e-14 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAYI-LFAFATAAPKLYLHMLRQRKKQLAPPREADKAK 315
RY FY S+ P +KW RYT FIVLYP+G EL T LP+++ G+ ++ LP S Y + + + ++ P+LY HMLRQRKK LAP KA+
Sbjct: 225 RYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVTGELLTIYAALPYVRETGMYSIRLPNKFNFSFDYYTFLILTMVSYIPLFPQLYFHMLRQRKKVLAPAEGYSKAE 331
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: D9IVF2_STRIE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=5 Tax=Echinacea TaxID=7674 RepID=D9IVF2_STRIE) HSP 1 Score: 74.7 bits (182), Expect = 4.330e-14 Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVV----YLLYAYILFAFATAAPKLYLHMLRQRKK 279
RY FY ++ P L W+RYT FIVLYP+G EL T + LP++K+ GL +L LP + Y + +++ + P+LY HMLRQRKK
Sbjct: 112 RYAFYVFALLNRLPYVLMWLRYTLFIVLYPIGVTGELWTIYLALPYVKSTGLYSL--ELPNDYNISFDYYSVLIFLMILYIPIFPRLYSHMLRQRKK 206
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A5J4Z155_PORPP (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z155_PORPP) HSP 1 Score: 75.1 bits (183), Expect = 4.950e-14 Identity = 42/114 (36.84%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 1 RYPFYALSIARM-CPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKA--LGLPALLPGLPGGSVVYLLYAYILFAFATAA---PKLYLHMLRQRKKQLA-PPREADKAKTP 321
R+P Y L + ++ CP L W+RY+AF++LYP G ++E+G +V LP++K + +L GG++++ Y + L A+ A P +Y++ML+QRK+ L+ R+A K K P
Sbjct: 136 RFPVYVLKLLQVECPSWLNWLRYSAFLLLYPSGISAEIGVVVVSLPYIKQSRVNFVSL-----GGTLIFNFYIFCLCGLASYAYFGPTMYMYMLKQRKRNLSLSGRDATKNKEP 244
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A7M7N2M7_STRPU (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7N2M7_STRPU) HSP 1 Score: 74.7 bits (182), Expect = 5.080e-14 Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVV----YLLYAYILFAFATAAPKLYLHMLRQRKK 279
RY FY ++ P L W+RYT FIVLYP+G EL T + LP++K+ GL +L LP + Y + +++ + P+LY HMLRQRKK
Sbjct: 122 RYAFYVFALLNRLPYVLMWLRYTLFIVLYPIGVTGELWTIYLALPYVKSTGLYSL--ELPNDYNISFDYYSVLIFLMILYIPIFPRLYSHMLRQRKK 216
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A061S8X2_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8X2_9CHLO) HSP 1 Score: 74.3 bits (181), Expect = 5.580e-14 Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAYILFA-FATAAPKLYLHMLRQRKKQLAPPREAD 306
RYP+YA ++ CP AL W+RYTAFI LYP+G +E+ + LP K G+ +L +P + Y ++ + L A + A +LY +LR R K+LAPPR +
Sbjct: 109 RYPWYAATLLGRCPHALTWLRYTAFIPLYPVGVLAEVWIILEALPIAKESGMYSLRMPNWANFAFDYPMFLWALLAVYPFAWLQLYAQLLRSRSKKLAPPRPKE 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig161714.3937.1 >prot_H-elongata_contig161714.3937.1 ID=prot_H-elongata_contig161714.3937.1|Name=mRNA_H-elongata_contig161714.3937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALback to top mRNA from alignment at H-elongata_contig161714:128..1086+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig161714.3937.1 ID=mRNA_H-elongata_contig161714.3937.1|Name=mRNA_H-elongata_contig161714.3937.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=959bp|location=Sequence derived from alignment at H-elongata_contig161714:128..1086+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig161714:128..1086+ >mRNA_H-elongata_contig161714.3937.1 ID=mRNA_H-elongata_contig161714.3937.1|Name=mRNA_H-elongata_contig161714.3937.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig161714:128..1086+ (Himanthalia elongata Himel1 dioecious)back to top |