mRNA_H-elongata_contig16170.3936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16170.3936.1
Unique NamemRNA_H-elongata_contig16170.3936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.000e-83
Identity = 149/218 (68.35%), Postives = 170/218 (77.98%), Query Frame = 1 
Query:    1 FVITDFDRETVVDGVIYNSLRSGEYWKRHPKANRLFLVLDDISSPLEEDVELEVSYQPHFNTITKTGDANFSKIPHAVAELIDNSIQATTSNTGARTVEIEVELGGKGASFLVVRDNGRGMNASGLKDFATYFLTQAREGKKRENRGVSGPQGTSKPTSTGSQANGSHGGSXXXXXXXXK---GKNSATASRRSSSNGIGKRRQGKICSGFISKFGVG 645
            FV+TDFDRETV+D  +Y+S+R+G+YW+R+PKANRLFLVLD+IS+PLE DVELEVSYQPHFNTITKTGDA+FSKIPHAVAEL+DNSIQATT N G RTVEIEVELGG+G SFLVV+DNGRGMNA+GLKDFATYFLTQ       ENRGVSGP G+S P    SQ + S GGS        +   GK    A+ R      GK + G ICSGFISKFGVG
Sbjct:    5 FVVTDFDRETVIDEAVYSSMRAGDYWRRNPKANRLFLVLDNISAPLEGDVELEVSYQPHFNTITKTGDAHFSKIPHAVAELVDNSIQATTDNPGPRTVEIEVELGGRGGSFLVVKDNGRGMNAAGLKDFATYFLTQ-------ENRGVSGPLGSSTPAFVESQPSVSQGGSASGSAGGAQTANGKGKGPAAPRPHGGTPGKMK-GSICSGFISKFGVG 214
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BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 3.340e-66
Identity = 112/136 (82.35%), Postives = 126/136 (92.65%), Query Frame = 1 
Query:    1 FVITDFDRETVVDGVIYNSLRSGEYWKRHPKANRLFLVLDDISSPLEEDVELEVSYQPHFNTITKTGDANFSKIPHAVAELIDNSIQATTSNTGARTVEIEVELGGKGASFLVVRDNGRGMNASGLKDFATYFLTQ 408
            FV+TDFDRETV+D  +Y S+R+G+YW+R+PKANRLFLVLD I+ PLE DVELEVSYQPHFNTITK+GDA+FSKIPHAVAEL+DNSIQATT N G RTVEIEVELGG+G SFLVV+DNGRGMNASGLKDFATYFLTQ
Sbjct:   42 FVVTDFDRETVIDEAVYLSMRAGDYWRRNPKANRLFLVLDSINDPLEGDVELEVSYQPHFNTITKSGDAHFSKIPHAVAELVDNSIQATTDNVGPRTVEIEVELGGRGGSFLVVKDNGRGMNASGLKDFATYFLTQ 177
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BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: D7FYN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.740e-31
Identity = 75/162 (46.30%), Postives = 98/162 (60.49%), Query Frame = 1 
Query:    1 FVITDFDRETVVDGVIYNSLRSGEYWKRHPKANRLFLVLDDISSPLEEDVELEVSYQPHFNTITKTGDANFSKIPHAVAELIDNSIQATTSNTGARTVEIEVELGGKGASFLVVRDNGRGMNASGLKDFATYFLTQAREGKKRENRGVSGPQGTSKPTSTGS 486
            FV+   DR++V+   +Y S+ SGEY     + +R FLVLD I + LE   ++ + + PH  T+   G ++ ++I   VAELIDNSIQAT  N   R VE+EV L GK  SFLVVRDNG GM+A GL+DFATY L         E RG+ GP  T   +ST S
Sbjct:   46 FVVATSDRKSVITDDVYRSMVSGEYLGGQKQLDRTFLVLDHIGARLEVPAKMAIGFSPHIGTLLGAGASHLNRIDDGVAELIDNSIQATRGNA-ERKVEVEVVLNGKSTSFLVVRDNGCGMHAKGLEDFATYALNM-------EARGMQGPTATGGGSSTSS 199
[Close]
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: UPI001176547D (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=UPI001176547D)

HSP 1 Score: 85.1 bits (209), Expect = 2.780e-14
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 2 
Query:  653 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLH 1015
            QA F+IG+S+R++T+ A  PDV+E V+ E EF+RR      +F   IK R  G+    D         +  ++ L AEE  K  FT +V+  LRD+H+    N E G L RELA IYHYY+H
Sbjct:  228 QAIFFIGNSVRMITRPADSPDVHELVLSEEEFKRREANKEEIFSGFIKNRRPGESSQHD---------ERFLQNLIAEERGKESFTAVVITGLRDEHIAVMKN-EFGALTRELAHIYHYYIH 339
[Close]
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A6P8GK83_CLUHA (structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1 n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8GK83_CLUHA)

HSP 1 Score: 80.5 bits (197), Expect = 9.370e-13
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 2 
Query:  653 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPDGIQ 1042
            QA FYIG S R++TK A+ PDV+EFVM + +FER+ K    ++   I+ R  G       E E+Y      ++ L AEE  K  FT +V+  ++  H+ +   Q+     RELA IYHYY+H  H  D  Q
Sbjct:  244 QAVFYIGESARIITKPASSPDVHEFVMSKEDFERKEKNKEDIYCGVIRNRKPGDHAHIVAEEELY------LQALIAEEEGKESFTAVVITGIQSDHITYL-KQQFHLWTRELAHIYHYYVHGIHGNDVRQ 367
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BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A8C1JIK2_CYPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=7 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1JIK2_CYPCA)

HSP 1 Score: 79.7 bits (195), Expect = 1.670e-12
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 2 
Query:  653 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPD 1033
            QA FYIG S+R+++K A  PDV+EFVM + +FER+ K   A++   I  RN   G C    S V    ++ +  +  EE  K  FT +++  ++ +HV +   Q      RELA  YHYY+H  H  D
Sbjct:  230 QAVFYIGQSVRMISKPAGSPDVHEFVMSKEDFERKEKNKEAIYTGFI--RNRKPGNC----SHVTASEEQFLRSIMMEEREKESFTAVIITGVQQEHVTYL-KQNLNLWTRELAHTYHYYIHGVHGND 350
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BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: F6W7J0_CIOIN (Uncharacterized protein n=7 Tax=Ciona intestinalis TaxID=7719 RepID=F6W7J0_CIOIN)

HSP 1 Score: 76.3 bits (186), Expect = 1.730e-12
Identity = 48/153 (31.37%), Postives = 78/153 (50.98%), Query Frame = 1 
Query:    1 FVITDFDRETVVDGVIYNSL-RSGEYWKRHPKANRLFLVLDDISSPLEEDVELEVSYQPHFNTITKTG-------DANFSKIPHAVAELIDNSIQATTSNTGARTVEIEVELGGKGAS-FLVVRDNGRGMNASGLKDFATYFLTQAREGKKRE 432
            F++T   RE + D   + +L  SG+             +L  +  PLE  V   + YQPH++T+ K+G       + N + +P A AELIDN++ AT  N G R +E+ +      A   L V DNG+GM++  L ++A Y L++     +R+
Sbjct:   52 FIVTTTGREEINDDDTFVTLIESGD----------TLYLLQYVDQPLEAPVAEHIEYQPHYDTLIKSGIYEYYASEGNMNPLPFAFAELIDNALAATARNVGPRIIELSLHFNTSTAEHMLCVYDNGQGMSSRQLNNWAIYRLSKFNRKDRRD 194
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BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: UPI001C09A402 (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C09A402)

HSP 1 Score: 78.6 bits (192), Expect = 4.020e-12
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 2 
Query:  653 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPDGIQ 1042
            QA FYIG S R++TK A  PDV+EFVM + +FER+ K    ++   I  RN   G C    + +    +  ++ L AEE  K  FT +V+  ++ +H+ +   Q      RELA IYHYY+H  H  D  Q
Sbjct:  246 QAVFYIGQSARIITKPAASPDVHEFVMSKEDFERKEKNKEDIYCGVI--RNRKPGDC----AHIVVEEELFLQALIAEEEGKESFTAVVITGIQSEHITYL-KQHFDLWTRELAHIYHYYVHGIHGNDMRQ 369
[Close]
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A8C1HNJ5_CYPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HNJ5_CYPCA)

HSP 1 Score: 78.2 bits (191), Expect = 4.970e-12
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 2 
Query:  653 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPD 1033
            QA FYIG S+R+++K A  PDV+EFVM + +FER+ K   A++   I  RN   G C    S V    ++ +  +  EE  K  FT +++  ++ +HV +   Q      RELA  YHYY+H  H  D
Sbjct:  152 QAVFYIGQSVRMISKPAGSPDVHEFVMSKEDFERKEKNKEAIYTGFI--RNRKPGDC----SHVTASEEQFLRSIVMEEREKESFTAVIITGVQQEHVTYL-KQNFNLWTRELAHTYHYYIHGVHGND 272
[Close]
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A8C1DJU9_CYPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DJU9_CYPCA)

HSP 1 Score: 78.2 bits (191), Expect = 5.070e-12
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 2 
Query:  653 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPD 1033
            QA FYIG S+R+++K A  PDV+EFVM + +FER+ K   A++   I  RN   G C    S V    ++ +  +  EE  K  FT +++  ++ +HV +   Q      RELA  YHYY+H  H  D
Sbjct:  230 QAVFYIGQSVRMISKPAGSPDVHEFVMSKEDFERKEKNKEAIYTGFI--RNRKPGDC----SHVTASEEQFLRSIVMEEREKESFTAVIITGVQQEHVTYL-KQNFNLWTRELAHTYHYYIHGVHGND 350
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFL9_ECTSI1.000e-8368.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR4_9PHAE3.340e-6682.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYN6_ECTSI4.740e-3146.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001176547D2.780e-1441.80structural maintenance of chromosomes flexible hin... [more]
A0A6P8GK83_CLUHA9.370e-1338.93structural maintenance of chromosomes flexible hin... [more]
A0A8C1JIK2_CYPCA1.670e-1237.50Structural maintenance of chromosomes flexible hin... [more]
F6W7J0_CIOIN1.730e-1231.37Uncharacterized protein n=7 Tax=Ciona intestinalis... [more]
UPI001C09A4024.020e-1238.17structural maintenance of chromosomes flexible hin... [more]
A0A8C1HNJ5_CYPCA4.970e-1237.50Structural maintenance of chromosomes flexible hin... [more]
A0A8C1DJU9_CYPCA5.070e-1237.50Structural maintenance of chromosomes flexible hin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16170contigH-elongata_contig16170:2921..7087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog2880.D7FYN6
EggNOG free text desc.inactivation of X chromosome by DNA methylation
EggNOG OGs28J2Q@1,2QREW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_000110.1
Exons8
Model size1048
Cds size555
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.5667276-UTR-H-elongata_contig16170:2920..30541622929947.5667276-UTR-H-elongata_contig16170:2920..3054Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 2921..3054 +
1691679219.182822-UTR-H-elongata_contig16170:2920..30541691679219.182822-UTR-H-elongata_contig16170:2920..3054Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 2921..3054 +
1622929947.5848489-UTR-H-elongata_contig16170:3562..36891622929947.5848489-UTR-H-elongata_contig16170:3562..3689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 3563..3689 +
1691679219.1942723-UTR-H-elongata_contig16170:3562..36891691679219.1942723-UTR-H-elongata_contig16170:3562..3689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 3563..3689 +
1622929947.6027224-UTR-H-elongata_contig16170:4348..45161622929947.6027224-UTR-H-elongata_contig16170:4348..4516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 4349..4516 +
1691679219.2044551-UTR-H-elongata_contig16170:4348..45161691679219.2044551-UTR-H-elongata_contig16170:4348..4516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 4349..4516 +
1622929947.6232882-UTR-H-elongata_contig16170:4953..50171622929947.6232882-UTR-H-elongata_contig16170:4953..5017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 4954..5017 +
1691679219.2200518-UTR-H-elongata_contig16170:4953..50171691679219.2200518-UTR-H-elongata_contig16170:4953..5017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16170 4954..5017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.638629-CDS-H-elongata_contig16170:5017..51381622929947.638629-CDS-H-elongata_contig16170:5017..5138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 5018..5138 +
1691679219.2304642-CDS-H-elongata_contig16170:5017..51381691679219.2304642-CDS-H-elongata_contig16170:5017..5138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 5018..5138 +
1622929947.6539917-CDS-H-elongata_contig16170:5599..56701622929947.6539917-CDS-H-elongata_contig16170:5599..5670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 5600..5670 +
1691679219.240249-CDS-H-elongata_contig16170:5599..56701691679219.240249-CDS-H-elongata_contig16170:5599..5670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 5600..5670 +
1622929947.668028-CDS-H-elongata_contig16170:6011..61521622929947.668028-CDS-H-elongata_contig16170:6011..6152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 6012..6152 +
1691679219.2490242-CDS-H-elongata_contig16170:6011..61521691679219.2490242-CDS-H-elongata_contig16170:6011..6152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 6012..6152 +
1622929947.6823168-CDS-H-elongata_contig16170:6560..66801622929947.6823168-CDS-H-elongata_contig16170:6560..6680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 6561..6680 +
1691679219.2613294-CDS-H-elongata_contig16170:6560..66801691679219.2613294-CDS-H-elongata_contig16170:6560..6680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 6561..6680 +
1622929947.695593-CDS-H-elongata_contig16170:6985..70871622929947.695593-CDS-H-elongata_contig16170:6985..7087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 6986..7087 +
1691679219.2714448-CDS-H-elongata_contig16170:6985..70871691679219.2714448-CDS-H-elongata_contig16170:6985..7087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16170 6986..7087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16170.3936.1prot_H-elongata_contig16170.3936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16170 5018..7087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16170.3936.1

>prot_H-elongata_contig16170.3936.1 ID=prot_H-elongata_contig16170.3936.1|Name=mRNA_H-elongata_contig16170.3936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MAAMGGQVGAPVPTERGKIRQPPRVGPQAMASESGDRARFAPVLFPSLEW
AALQAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNI
KLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLALRDQHV
EWFANQEKGCLKRELASIYHYYLHPEHCPDGIQR*
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mRNA from alignment at H-elongata_contig16170:2921..7087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16170.3936.1 ID=mRNA_H-elongata_contig16170.3936.1|Name=mRNA_H-elongata_contig16170.3936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4167bp|location=Sequence derived from alignment at H-elongata_contig16170:2921..7087+ (Himanthalia elongata Himel1 dioecious)
TTCGTCATCACCGACTTCGACCGCGAGACAGTGGTCGATGGCGTCATCTA
CAATTCGCTGCGGTCTGGGGAGTACTGGAAACGGCACCCCAAGGCCAATC
GTCTCTTCCTTGTTCTAGACGATATATCCTCCCCGTGAGTCTCCAAGCCT
CACTTGTTTTAGCACCCCCCTCTTCCCCCATCCCCCAACGTCAAAATTTC
TTTAACTACAGCTTCGGACAACCCCCGGAGGGGCTTCTCTTCCTTGCCGC
GCTACGGGGAGGTCTGCCCGGTGATGTCATGTCTTCTTTTTAGCCACCCC
CCCCCTTCGCGCTTTCTGCAACTGTAACACACGTTCCGGAGAGTGCTATA
TCGGGAGAACGACGTGTGCTGGTGCGGCCAGTGTCCTCATGACCAGCAGC
AACTCGAAGATCTCAGCAAACATTTGGGGCGTGGGAAGGCAATGGATTGG
AGAAAGTCGACAGCATAAGAACGCCCTCCGCGGTAGATACTAATCCAAAC
GCCATCGCTTGTGCTATAGGAGGTGAAACGCCCGCGTCTTGCCCTGCTAT
ATGATGATGCTTGCTTCTCGGTCCGCAGGCTCTCGAAATGACTCGTTTGT
TTGGTTTCATGCGCGCGCGCGCGTTCCGCCTTCCTTCTCCAGGCTTGAAG
AAGACGTGGAGCTCGAGGTGTCGTACCAGCCGCACTTCAACACCATCACG
AAGACGGGGGACGCCAACTTCAGCAAAATTCCACACGCCGTCGCAGAGCT
CATCGACAACTCTATCCAGGTAGGGGGTACCCAATTTTTTCATGCCTTAG
GTGTTCAATTGTCCTCAGTAGGACGGAACATTGTTCTCACGTGATCGATT
GCCGATGGGCAATCGTTTCTTCCTAGTGTGTCAAACGTGACGCGGGGGGA
AAGGATTAATTAGAGGGGTTTCCTATTTGGGACGGTGGCATCATCTATTG
ACCGATTGTAGTGATTTTTCCTCCTCGGAGTCCAATGGGGGCATGTACAC
GGAGGACGCAGCAATTAAGTACCGTCCCGAACGGGGTGGCCTCTTGCAGG
GTTTAAAGAAGAGAAGGAAGCTGAGTGTCATCGCCTGTAGGGGGGGGAGT
CGCGCGGGTCGGCGGTGGGGCAACGATGTGATGGACCTCGTGGTAATTTT
GTTGCTTGCACAAAACGTCAAGGGCAGCGATGTTGATTAAAACCAAAAAC
CCAACCACGCGAGATGATTATTCTGAAAAAGCGGGTCGAAGTGAAGCTTG
TTTGCCCAAGGCATGCGTACTCTTGAGGTGAAGAGGGCAATATTTGGGAC
GCACGCTGACGGGGGATGGGGTAACATTATGGCTCTCCTCTTTCTCGACT
CTCCCTCTACTCCCTGGTCTCTCTTTAGTTCTCTTCTGCTCTGGTTGCTC
CCCCCCCCTGCTGCTCCCGCGCGCCCAGGCAACCACCTCGAACACGGGGG
CACGCACGGTGGAGATCGAGGTAGAGCTCGGCGGAAAGGGGGCCAGCTTT
CTCGTCGTCCGCGACAACGGCCGCGGCATGAACGCTTCGGGTCTCAAGGA
TTTCGCCACCTACTTCCTGACACAGGCGCGCGAGGGAAAAAAAAGAGTTT
CTTTTGATCCTCCCTTTTTTTTTTTAGAGGTTGTAATTTTAATTCTGTCC
GTTTTTTGCTTTCTTCGTTCATATTTTTCGTAAAAAAATATGAGCTCATC
TCAACCCTCCGAACATCCACACCTTCTTAGCACCATGAGAGGTGCAGTTC
ACAGTTATCAACTATCGTCACGTTCGCTGTTGCGTGTTGTTTTACCAGGA
ATGCATACGGGTTTCGCTGTAGGCATTGTTATATCGGGTATATTGTGACT
TCTTTTTTTTGCCAAGTTTTGGTTTTATGATGCGGTGGAAATTTGAAAAT
TCCTACGGTATAGGAGGGATTTTTATTTTTATTTTTTTGCTTTGCCCCGT
AGAGTGATACCGTAAATAAAAATGTTAGGTTTTGGTAAAGAGGGCTTCGT
GGTATTTTTCTTCTCTCGACGTTGTTTCCGCAGGAAAACCGAGGCGTTTC
TGGCCCCCAGGGGACGTCCAAGCCCACGTCTACTGGGTCACAGGCGAATG
GCAGCCATGGGGGGTCAGGTGGGGGCGCCAGTGCCAACGGAAAGGGGAAA
AATTCGGCAACCGCCTCGCGTCGGTCCTCAAGCAATGGCATCGGAAAGCG
GAGACAGGGCAAGATTTGGTGGGTCTGCGTGCGTATCTGTTTTATTCTCC
ACTTCCGCCGTACTGCTCATTGTAAAAAAAATAGGAGCAGTATTAACAGT
GGCAACCGCCGGGCGGGCACGCGCGCGCGTTTTTCGCGACAGTGCTAGTA
CGGTTTTTCCTTTTGGGATTCGGCGGCCAAGTCGCGTCGCCGACTTCTCA
AGACCCTGCATGGATTCTGGAAGGAAATAACACAAAAATAATGACATAGC
CTTGGGCGTGTAGAAATTTCCTGCCAGGAAGTGTTCAATTGGCTAGTGAC
GTTGGGGGGGAGGCTTCCAAAACGGCGGTGTGGAGCTTTTGAAAATGACT
GCGCTTCTGTGCGGTCACTAAGCGAGTTGGATGGAAGGTCTCGGCCGTGT
GCAGGGGAGGGGAGGGGAAGACACCATCCCCTCACGAACATGTTTTTTCG
TTCGACGCCCGCGCTATTGATCTCCACAGCTCCGGTTTTATTTCCAAGTT
TGGAGTGGGCCGCTCTGCAAGCTGGCTTCTACATCGGGTCGAGTCTTCGG
GTGAGTGAGGGAAGAAACACCCTTGGGCTCGCTTGGAGTTCCAAGCATCC
AAGCAAGGCGTTTTTCGATAACGAGAAGGGGGAGCGGGGAAGGTAGACGA
AGAAGGTGGTTGAGGAGAGTACGTGGATGGGTTAAGAAAAACCTCACGTT
GTTGGAAAGGTTCGTAAACAAGGCAATCTATATCTATATCTGGCCCTAGT
CTTAAGTCGTGCGTTCACTTCTGAAGAGTTATTGCGCAACTTTTTAATTT
CTCCACCAGGGAGTACCGCCGCTTCATTTTGAGTAGTGTTGCAGTCAAGT
CGAACTGAACCCAACCGAACCCAACCGAACCGAACTGTCAGGTGGTGACC
AAGACGGCGACGCAGCCGGACGTGTACGAATTCGTGATGGACGAGGTGGA
GTTCGAGCGACGAGCCAAGGCGAACGCTGCGATGTTCAGGGACAATATAA
AGCTGAGGAACGCGGGCAAGGGGAAATGCAGGGTAAGATAATCCCTCCAG
CGATCGAAATCCGATATATTTTGGTATTGGTAACGCGTGGAAGGCGTTCC
GGGGGCGGGCTAATGCTGGTCGGGGTGCGGCGCGGCGCGGTAGTTTTCCC
AGCCGAATGTGGTAATCGGATACCGGCAAACGCGCAAATGTGTATTGAAT
CTCGGGGAAATGTGTTGTTTTGTGTCACGATTGAGTTGAAACAATCGCCT
TACAGTGGTCATAATTTTCCTTCGTAAGGCGAGCGGTTGTTTTTTCTGTT
CTTTCGCAAAATCTGCTCCTGGTAAGGGAAACGTCCCGTAGTACCCACCA
CACACAAATGATCAACGTATATATATAGATTTATATATCCGCTGTGGAGT
TTTGCCGACTCGACCACGATCGCCTTTCGTGGACATGCAGGATCCGGAGT
CAGAGGTTTATGGGCCTGCGAAGGAGCTCATGGAACGGCTCAGGGCGGAA
GAATCGAGTAAATGCCACTTCACGTACATCGTGCTTGCGCTGCGGGACCA
GCACGTGGAGGTGTGTGTTTCTGTGGCGTATGATACCATGGCTTAATCAG
AGTTCCAAGATGTTCAAAGGCGATAACCGATCGGCAAGCGAAAGGACTGC
GAGGATATCGACTCGTTGTCGAAGTTTTCCGTCGAAATATGTGTGTGTTT
TTTCGGTGGCGGAAGGTCTTATCATATGCGTCGCTGCTTCCTTCACCGTC
CTTTGAAATGCATGCCTCGCTCTTGTATGACCCCCTTTCCCTCCCCCCCC
ATCCCTCTTCGGATATGTGGAACTCCTTTGTGGGGCCTGCCGGCTCGACC
GCGGACGTGGGTCAGTGGTTCGCCAACCAAGAGAAGGGTTGCCTCAAGCG
AGAGCTGGCCTCCATTTACCACTACTACCTTCACCCAGAGCATTGCCCCG
ATGGCATCCAAAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig16170:2921..7087+

>mRNA_H-elongata_contig16170.3936.1 ID=mRNA_H-elongata_contig16170.3936.1|Name=mRNA_H-elongata_contig16170.3936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig16170:2921..7087+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCCATGGGGGGTCAGGTGGGGGCGCCAGTGCCAACGGAAAGGGG
AAAAATTCGGCAACCGCCTCGCGTCGGTCCTCAAGCAATGGCATCGGAAA
GCGGAGACAGGGCAAGATTTGATGGCAGCCATGGGGGGTCAGGTGGGGGC
GCCAGTGCCAACGGAAAGGGGAAAAATTCGGCAACCGCCTCGCGTCGGTC
CTCAAGCAATGGCATCGGAAAGCGGAGACAGGGCAAGATTTGCTCCGGTT
TTATTTCCAAGTTTGGAGTGGGCCGCTCTGCAAGCTGGCTTCTACATCGG
GTCGAGTCTTCGGCTCCGGTTTTATTTCCAAGTTTGGAGTGGGCCGCTCT
GCAAGCTGGCTTCTACATCGGGTCGAGTCTTCGGGTGGTGACCAAGACGG
CGACGCAGCCGGACGTGTACGAATTCGTGATGGACGAGGTGGAGTTCGAG
CGACGAGCCAAGGCGAACGCTGCGATGTTCAGGGACAATATAAAGCTGAG
GAACGCGGGCAAGGGGAAATGCAGGGTGGTGACCAAGACGGCGACGCAGC
CGGACGTGTACGAATTCGTGATGGACGAGGTGGAGTTCGAGCGACGAGCC
AAGGCGAACGCTGCGATGTTCAGGGACAATATAAAGCTGAGGAACGCGGG
CAAGGGGAAATGCAGGGATCCGGAGTCAGAGGTTTATGGGCCTGCGAAGG
AGCTCATGGAACGGCTCAGGGCGGAAGAATCGAGTAAATGCCACTTCACG
TACATCGTGCTTGCGCTGCGGGACCAGCACGTGGAGGATCCGGAGTCAGA
GGTTTATGGGCCTGCGAAGGAGCTCATGGAACGGCTCAGGGCGGAAGAAT
CGAGTAAATGCCACTTCACGTACATCGTGCTTGCGCTGCGGGACCAGCAC
GTGGAGTGGTTCGCCAACCAAGAGAAGGGTTGCCTCAAGCGAGAGCTGGC
CTCCATTTACCACTACTACCTTCACCCAGAGCATTGCCCCGATGGCATCC
AAAGGTAGTGGTTCGCCAACCAAGAGAAGGGTTGCCTCAAGCGAGAGCTG
GCCTCCATTTACCACTACTACCTTCACCCAGAGCATTGCCCCGATGGCAT
CCAAAGGTAG
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