mRNA_H-elongata_contig161618.3931.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161618.3931.1
Unique NamemRNA_H-elongata_contig161618.3931.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A0A6H5JGP1_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP1_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.070e-53
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 267
            YLDSEDSTKPIYLYVNCPGGSVIAGLA+FDTMQHIRSEVVTINVG+AASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV
Sbjct:   93 YLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 181
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BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A0A835Z885_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z885_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.100e-50
Identity = 81/89 (91.01%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 267
            YLDSEDSTKPIY+YVNCPGGSVIAGLA++DTMQHI+SEV+TIN+G+AASMASF+LAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV
Sbjct:  117 YLDSEDSTKPIYMYVNCPGGSVIAGLAIYDTMQHIKSEVITINMGMAASMASFLLAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 205
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BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A0A0G4F8U0_VITBC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8U0_VITBC)

HSP 1 Score: 165 bits (417), Expect = 1.050e-48
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 267
            YLDSEDSTKPIY+Y+NCPGGSVIAGLA++DTMQHI+SEVVTINVG++ASMASF+LAAG KGKR ALPHSRVMIHQPMGGAQGQAEDIKV
Sbjct:  144 YLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAGTKGKRFALPHSRVMIHQPMGGAQGQAEDIKV 232
[Close]
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A0A0G4GFY1_9ALVE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GFY1_9ALVE)

HSP 1 Score: 161 bits (408), Expect = 1.230e-47
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVRCR 276
            YLDSEDSTKPIYLY+NCPGGSVIAGLA++DTMQH++SEVVTINVG++ASMASF+LA GAKGKR ALPHSRVMIHQPMGGA+GQ EDI+V  +
Sbjct:  109 YLDSEDSTKPIYLYLNCPGGSVIAGLAIYDTMQHVKSEVVTINVGLSASMASFLLAGGAKGKRFALPHSRVMIHQPMGGARGQTEDIRVEAQ 200
[Close]
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A0A7S1TU42_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU42_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.420e-47
Identity = 76/89 (85.39%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 267
            YLDSED  KPIY+Y+NCPGGSVIAG+A++DTMQHI+++VVTINVGI+ASMASF+LAAGAKGKR+ALPHSRVMIHQPMGGAQGQAEDIKV
Sbjct:  105 YLDSEDPDKPIYMYLNCPGGSVIAGMAIYDTMQHIKADVVTINVGISASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKV 193
[Close]
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: J7G5H7_9CRYP (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G5H7_9CRYP)

HSP 1 Score: 159 bits (402), Expect = 3.000e-47
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVRCR 276
            YLDSED++KPIYLY+N PGGSVI+GLAM+DTM+HI+SEVVTINVG+AASMASFILAAG KGKR+ALPHSR+MIHQPMGGAQGQA DIKV  +
Sbjct:   91 YLDSEDNSKPIYLYINSPGGSVISGLAMYDTMRHIKSEVVTINVGLAASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQ 182
[Close]
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A0A7S1GRK0_CYCTE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRK0_CYCTE)

HSP 1 Score: 160 bits (404), Expect = 3.280e-47
Identity = 76/89 (85.39%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 267
            YLDSEDSTKPIYLY+NCPGGSVI+GLA++D MQHI SEV+TIN+G+AASMASFILAAG++GKR+ALP+SRVMIHQPMGGAQGQAEDIKV
Sbjct:  114 YLDSEDSTKPIYLYINCPGGSVISGLAIYDAMQHISSEVITINLGLAASMASFILAAGSRGKRLALPNSRVMIHQPMGGAQGQAEDIKV 202
[Close]
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A0A7S0KYD1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYD1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.030e-47
Identity = 75/89 (84.27%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 267
            YLDSEDS+KPIYLY+NCPGGSVI+GLA+FD MQHI+SEV+TIN+G+AASMASFI+AAG+KGKR+ALP SR+MIHQPMGGAQGQAEDIKV
Sbjct:  115 YLDSEDSSKPIYLYINCPGGSVISGLAIFDCMQHIKSEVITINLGLAASMASFIMAAGSKGKRLALPSSRIMIHQPMGGAQGQAEDIKV 203
[Close]
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: F0YKH8_AURAN (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YKH8_AURAN)

HSP 1 Score: 157 bits (396), Expect = 8.250e-47
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKV 267
            YLDSEDSTKPIYLY+NCPGGSVIAGLA+FDTM HI+S+VVTIN+G++ASMASF+L  G KG R+ALP+SRVMIHQPMGGAQGQAEDIKV
Sbjct:   53 YLDSEDSTKPIYLYINCPGGSVIAGLAIFDTMNHIKSKVVTINIGLSASMASFLLCGGTKGSRLALPNSRVMIHQPMGGAQGQAEDIKV 141
[Close]
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Match: A9BKW1_HEMAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BKW1_HEMAN)

HSP 1 Score: 157 bits (398), Expect = 1.170e-46
Identity = 75/92 (81.52%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVRCR 276
            YLDSED++KPIYLY+N PGGSVI+GLAM+DT++HI+SEVVTINVG+AASMASFILAAG KGKR+ALPHSR+MIHQPMGGAQGQA DIKV  +
Sbjct:   88 YLDSEDNSKPIYLYINSPGGSVISGLAMYDTIRHIKSEVVTINVGLAASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQ 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161618.3931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGP1_9PHAE2.070e-5397.75ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z885_9STRA1.100e-5091.01ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A0G4F8U0_VITBC1.050e-4888.76ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A0G4GFY1_9ALVE1.230e-4782.61ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1TU42_9STRA1.420e-4785.39ATP-dependent Clp protease proteolytic subunit n=2... [more]
J7G5H7_9CRYP3.000e-4782.61ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1GRK0_CYCTE3.280e-4785.39ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0KYD1_9STRA5.030e-4784.27ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0YKH8_AURAN8.250e-4783.15ATP-dependent Clp protease proteolytic subunit n=2... [more]
A9BKW1_HEMAN1.170e-4681.52ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161618contigH-elongata_contig161618:413..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog44056.XP_009040903.1
Preferred nameclpP
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009368,GO:0009536,GO:0009987,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051603,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit
Ec32 orthologEc-10_003920.1
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.2298439-CDS-H-elongata_contig161618:412..5921622929947.2298439-CDS-H-elongata_contig161618:412..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161618 413..592 +
1691679219.0819612-CDS-H-elongata_contig161618:412..5921691679219.0819612-CDS-H-elongata_contig161618:412..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161618 413..592 +
1622929947.2475312-CDS-H-elongata_contig161618:1181..12771622929947.2475312-CDS-H-elongata_contig161618:1181..1277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161618 1182..1277 +
1691679219.093098-CDS-H-elongata_contig161618:1181..12771691679219.093098-CDS-H-elongata_contig161618:1181..1277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161618 1182..1277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161618.3931.1prot_H-elongata_contig161618.3931.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161618 413..1277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161618.3931.1

>prot_H-elongata_contig161618.3931.1 ID=prot_H-elongata_contig161618.3931.1|Name=mRNA_H-elongata_contig161618.3931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
YLDSEDSTKPIYLYVNCPGGSVIAGLAMFDTMQHIRSEVVTINVGIAASM
ASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVRCR
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mRNA from alignment at H-elongata_contig161618:413..1277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161618.3931.1 ID=mRNA_H-elongata_contig161618.3931.1|Name=mRNA_H-elongata_contig161618.3931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig161618:413..1277+ (Himanthalia elongata Himel1 dioecious)
TACCTAGACTCCGAGGACAGCACGAAGCCCATCTACCTGTACGTGAACTG
CCCCGGGGGCTCCGTCATCGCCGGGCTCGCCATGTTCGACACCATGCAGC
ACATACGATCGGAGGTGGTGACGATCAACGTCGGCATCGCGGCGTCGATG
GCCTCGTTCATCCTAGCCGCGGGCGCGAAGGTAAACCAAACGAGAAGACA
GACGCGAGGCGACCCGACGCACCTGCCAGACAACGAGATGGTCCACTCCC
AAGCGATCGGTGGCCGTAGGAACAACGATGATGGCTCCGCTCCGTCTTCC
CGAGGACGCGTGGTCAATCGACCATTGAACACAGCGAAGGCTTGGCTAAA
CTTGAGTCCGCCTTCCTTCCCCCACCCCCTTTTAAAGTGTTGTATCTCAT
ACAATTTGTGGTAAACTACCGCCACACTGCAACATAATAATATACAATGA
AGTAGATCGTAAGTAGGAATTCAAAAAGATCATTGCGATAGTATTCTATT
TAATAGTAGTTTTTTCAAGCGTTCACGTCACGTCACCCCCACCCCCCACC
CCACACCCCGGGAGCGTTGGATTTATGTCGCGCACGGTAGTAAACAAACA
TAATCACGGTAGCAAAACGCGCGGGGGCAGGGAGGGAGGGGGGGGTTGCA
AATGTGTGCGCTGGCTAGAAAAGGCCCTCGGTATTCATCTCTAGACCCAT
CGTGTGACGAATGAACTCGCGCCGCGCGTGCCCCCACCGGGATGCGGGTT
ACCTCTCCGGCGCGATCAGGGAAAGCGAATGGCTCTGCCTCACTCGCGAG
TGATGATTCACCAGCCCATGGGTGGGGCGCAAGGGCAAGCGGAAGACATC
AAGGTAAGATGTAGA
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Coding sequence (CDS) from alignment at H-elongata_contig161618:413..1277+

>mRNA_H-elongata_contig161618.3931.1 ID=mRNA_H-elongata_contig161618.3931.1|Name=mRNA_H-elongata_contig161618.3931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig161618:413..1277+ (Himanthalia elongata Himel1 dioecious)
TACCTAGACTCCGAGGACAGCACGAAGCCCATCTACCTGTACGTGAACTG
CCCCGGGGGCTCCGTCATCGCCGGGCTCGCCATGTTCGACACCATGCAGC
ACATACGATCGGAGGTGGTGACGATCAACGTCGGCATCGCGGCGTCGATG
GCCTCGTTCATCCTAGCCGCGGGCGCGAAGTACCTAGACTCCGAGGACAG
CACGAAGCCCATCTACCTGTACGTGAACTGCCCCGGGGGCTCCGTCATCG
CCGGGCTCGCCATGTTCGACACCATGCAGCACATACGATCGGAGGTGGTG
ACGATCAACGTCGGCATCGCGGCGTCGATGGCCTCGTTCATCCTAGCCGC
GGGCGCGAAGGGAAAGCGAATGGCTCTGCCTCACTCGCGAGTGATGATTC
ACCAGCCCATGGGTGGGGCGCAAGGGCAAGCGGAAGACATCAAGGTAAGA
TGTAGAGGAAAGCGAATGGCTCTGCCTCACTCGCGAGTGATGATTCACCA
GCCCATGGGTGGGGCGCAAGGGCAAGCGGAAGACATCAAGGTAAGATGTA
GA
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