mRNA_H-elongata_contig16150.3927.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16150.3927.1
Unique NamemRNA_H-elongata_contig16150.3927.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY)

HSP 1 Score: 189 bits (481), Expect = 1.770e-49
Identity = 142/430 (33.02%), Postives = 212/430 (49.30%), Query Frame = 1
Query:   16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRSLGSLTARRRWWKISTSRK---EARY---------------------WLRRGLPTFSKADE------------------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFME-----PSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLA 1146
            +AM   + + W+KA E+ M  M  N V     +P+     G   +YKRK+   GK+E YK RLV +G+ Q  G+ Y + + P     SIR+ L+ AA  D E+   D K AFL  +I EE+Y++ P  +     A   R++ S+   + W     + K   EA Y                     ++ + L  FS  D                   P+  EE+E++RN PY  AVG LM+    T  DI  A   V+R+  NPGP H  AV  I++YL  TK + + +G +   L ++ YTDS+F++ +D R+S+SG V  L KGAI W S  Q+ T   T+EAE +A SEA      ++KF++     PS+ +  + +  DN G+I  A    A +RTKHI+ + H++ D      V     ITH+A
Sbjct:  553 EAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFH-ISWARIKRAMSSI---KMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRKFIQELGVVPSIES-PIKIHCDNNGAIANAVEPRAHKRTKHIERRFHLIHDIIHRGDVE----ITHIA 971          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A5AHF5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHF5_VITVI)

HSP 1 Score: 177 bits (449), Expect = 3.810e-47
Identity = 139/425 (32.71%), Postives = 204/425 (48.00%), Query Frame = 1
Query:   16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPE----------EY--QDFP----GAAN---------PRSLGSLTARRRW---WKISTSRKEARYWLRRGLPTFSKADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEP----SMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLADDQP 1158
            QAMES +  KW +A    +  +  N V      P      G   ++K K +  G IE+YK RLV +GF Q EG+ Y   + P     S+R+ +   A  D EL   D K AFL  ++DE++Y+E PE          EY  ++F     G AN          RS G L   ++    W +     ++      G+    K D+      PRN  E+E+++  PY  AVG LM+  T T  DI+       R+  +PG  H KA  K+M+YL  TKD+ +TY R    L +  Y+DSD+  CLD+ +S SG V MLA GAI W S  Q +T S T EAE VA  EA      ++ F+        +A  + ++ DN  ++  + N   S  +KH+D+K+ +V++    Q V +  + T L    P
Sbjct:   49 QAMESDDSSKWMEAMNEELKSIAHNDVWDLIELPNSCKPVGCKWIFKTKRDAKGNIERYKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMTLVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGDLGLLHETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDWVLERFNMQS---CSSGIAPILKGDKLSKMQCPRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFVVGMFGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPLRIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVGDP 469          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 177 bits (450), Expect = 2.410e-45
Identity = 137/432 (31.71%), Postives = 198/432 (45.83%), Query Frame = 1
Query:    1 PRNRRQAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAAN-PRSLGSLTARRRWW---------KISTSRKEA------------------------------------RYWLR----------RGLPTFSKADEPR--NPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQ---------KFMEPSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRD 1095
            P+   +AM S E ++WR+A E     +++N    +T  P  +      +++K+K + DGK+ +YK RLV +GF Q  G+ Y + Y P     SIR   + AA +D E+  FD K AFL  ++DEE+++++P    D        +SL  L    R W         K +    EA                                     Y LR          +G+ T  +A +    N  +     N PYREAVG LM+ A +T  DI  A   V+R+ E     H  AV +I++Y   T D+GI Y        +  Y+DSDF A  DTRRS SG V +   G I W S  Q++    T+EAE VA S+A +         K +  + +  A  +  DN+GSIKL  N    +RTKHIDV+ H +RD
Sbjct:  565 PQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTDAGNVVKLQKSLYGLKQSPRQWNKRFHQFLCKFNFISSEADRCVYKGNIEGERVLLALYVDDGLVMAKTQQAVEMKNYLLRVAKRFNMEDAKGISTPMEAGKYLVINNNDTSAGMNVPYREAVGSLMFAACVTRPDIMFAVAVVSRYLEQSATEHWTAVKRIIRYAKETADYGIVYDG-ATAEPLVIYSDSDFAADPDTRRSTSGYVTVHCGGPISWQSIRQKIVALSTTEAEYVAASDATKEAIWIRRLMKSVGAAAVGHATELRLDNQGSIKLIKNPEFHKRTKHIDVRFHFIRD 995          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A438CBX1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CBX1_VITVI)

HSP 1 Score: 171 bits (434), Expect = 4.750e-45
Identity = 125/388 (32.22%), Postives = 187/388 (48.20%), Query Frame = 1
Query:   16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRSLGSLTARRRWWKISTSRKEARYWLRRGLP---------TFSKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEPSMMAGAVN----VFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRV 1122
            Q  +S   +KW +A +  M  M +N V      PK     G   ++K K +  G I +YK RLV +GF Q E + Y + + P  +  S R+ +   A  D EL   D K  FL  +IDE +Y+  PE ++           GS        K    +  +R+ +    P          FS    P+N  EK+++  FPY   VG LM+    T  DIA     + R+  N G  H K V ++MQYL  TKD+ +TY R    L +  Y+DSDF  CLD+RRS SG + MLA GA+ W S  Q +  S T EAE +A  EA      ++ F+    +   +     +  DN+ +   + N  +S ++KHID+K  +V++   VQ+++V
Sbjct:   60 QVKQSSNSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEAIDYKETFSPVSSKDSFRIIMTLVAHYDLELHQMDVKTTFLNSNIDETIYMVQPENFESNDSKQLINRNGSRGILGLSQKAYIDKVLSRFGMSNCAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASVVGSLMYAQVCTCPDIAYIVGMLGRYLSNLGMDHWKKVKQVMQYLQRTKDYMLTYHRSS-HLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKSVKQTLIASSTMEAEFIACYEASNHGIWLRNFVTQLRIVDGIEKPLRINCDNKAAELYSKNNRSSSKSKHIDIKFLIVKER--VQSLQV 444          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A438D4E2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D4E2_VITVI)

HSP 1 Score: 172 bits (437), Expect = 6.910e-44
Identity = 122/382 (31.94%), Postives = 194/382 (50.79%), Query Frame = 1
Query:  148 LYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPG---------------------AANPRSL-----GSLTARRRWWKISTSRKEARYWLRRGLPTFS---KADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEPSMMAGAVN----VFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLADDQP 1158
            ++K K +  G IE+YK RLV +GF Q EG+ YT+ + P     S+R+ LA  A  D EL+  D K AFL  +++EE+Y++ PE +    G                     A N + L     G L   +  +    ++   R+ ++   P+ S   K D       P+N  E+E+++N PY  AVG LM+    T  DIA A   + R+  N G  H KA  K+M+YL  TKD+ + Y R+   L +  Y+DSDF  C+D+R+S SG + +LA GAI W S  Q +T + T EAE ++  EA      ++ F+    +  +++    ++ DN  ++ +A N  +  R+KHID+K+  +R+    + V +  + T L    P
Sbjct:  395 VFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSGSKVCFLVLYVDDILLATNDKGLLHEIKGILGLSQETY---INKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNLGIDHWKAAKKVMRYLQGTKDYKLMY-RRTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILASGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADP 772          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A4Z0A825_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A825_9AGAM)

HSP 1 Score: 168 bits (426), Expect = 7.730e-44
Identity = 123/387 (31.78%), Postives = 201/387 (51.94%), Query Frame = 1
Query:    1 PRNRRQAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRS-LGSLTARRRWWKISTSRKEARYWLRRGL-PTF--SKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQKFMEPSMMAGAV-NVFE-------DNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVV 1125
            PR   +A    EW KW +A E  +  M +    K   +P    + G   ++K K +  G I KYK RLV QGF Q+ GV +T  + P    +SIR+    AA  + EL   D K A+L  D+DEE+Y++ P  +   PG  + R+ + ++ AR   + +  S+      L   L P+F  + A  P   ++ EE+RN PYREA+G LM+ A  T  DIA A   +++F +NPG  H +    +++YL  TK+  +TY R      +  Y+D+D+ +  D R  +SG V ++  GA+ W S+ Q +    ++EAE VA++ A ++ +      G +   F+       DN+ ++ LA +     RTKHI +++H +R+  +   + +V
Sbjct:   82 PRTVNEARAGAEWPKWEEAIEDELVRMEKMGTWKLVEKPDRVNIVGSKWVFKIKRDAAGTIIKYKARLVAQGFSQIPGVDFTDTFAPVAKLSSIRILAVLAAHFNWELHQMDVKNAYLNGDLDEEIYMKQPPGFPA-PGQEHKRAYIDTILAR---FNLEDSKP-----LDTALDPSFQLTTAQSPSTLQQYEEMRNVPYREAIGSLMYAALGTRPDIAYAVTTLSQFMQNPGRMHWEGAKCVLRYLKATKEEWLTY-RGDAKTGIMGYSDADWGSS-DHRHFISGYVFLVDSGAVSWSSKKQPIVALLSTEAEYVAMTHAAKEAVWMRAFLGEMLTPFDMPTLLHCDNQSAMTLAKDNIFHSRTKHIAIRYHFIRNIIEHDEIDLV 457          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A5ASB2_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ASB2_VITVI)

HSP 1 Score: 167 bits (422), Expect = 1.440e-43
Identity = 122/377 (32.36%), Postives = 183/377 (48.54%), Query Frame = 1
Query:   16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRSLGSLTARRRWWK--ISTSRKE------ARYWLRRGLP---TFSKADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQKFMEPSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRD 1095
            Q  +S + +KW +A +  M  M +N V      PK     G   ++K K +    I +YK RLV +GF Q E + Y + + P  +  S R+ +A  A  D EL   D K  FL  +IDE +Y+       D     N   +  +   R   +  +  S+K       +R+ +    P     +K D+      P+N  EK+++  FPY  AVG L++    T  DIA     + R+  NPG  H K   ++M+YL  TKD+ +TY R    L +  Y+DSDF  CLD+RRS SG + MLA GA+ W S  Q +  S T EAE +A  EA           G   +  DN+G+   + N  +S ++KHID+K  +V++
Sbjct:   39 QIKQSSDSEKWIEAMKDEMKSMKDNGVWDLVKLPKGVKPIGCKWIFKTKRDSKDNIVRYKARLVAKGFTQKEDIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTTFLNGNIDETIYMRFLSSKFDMKDLGNASFMLGIQIHRDSSRGILGLSQKAYIDKVLSRFGMSNCAPGDMPLAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLIYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYHRSS-HLEIVGYSDSDFIGCLDSRRSTSGYIFMLAGGAVSWKSVKQTLIASSTMEAEFIACYEASNH--------GIWLINCDNKGAELYSKNNRSSSKSKHIDIKFLVVKE 406          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.810e-43
Identity = 110/332 (33.13%), Postives = 170/332 (51.20%), Query Frame = 1
Query:  253 YLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEY--------------------QDFPGAANPRSLGSLTARRRWW--------------KISTSRKEARYWLRRG--------LPTFSKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQG-CGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQ---------KFMEPSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVR 1092
            Y PT A +S+R+  A A  ++  LRHFD KQAF++ D+DE++++ +PE                      +D       ++LG L    RW+              KIS         +  G        LP   K  E    ++ EE+ ++P+RE +G LMW AT T  DIA+A RAV R+  +P   H +A + I+ Y++ T + GIT+ R    GL ME + D+D+ +    RRS+SG ++M   G I W+SR Q+     T+EAE V+L++ ++         +FM P      + VFEDN+G+I+LA N  ++  +KHI V+HH +R
Sbjct:   12 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSDDIFSIGEEERCDQFGRDLNTMVPVKNLGDL----RWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIHVRHHFIR 336          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI)

HSP 1 Score: 170 bits (431), Expect = 7.980e-43
Identity = 133/398 (33.42%), Postives = 197/398 (49.50%), Query Frame = 1
Query:   46 WRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPE------------EYQDFPGAANPRSLGS------LTARR----RWWKISTSRKEARYWLR----------RGLPT-------FSKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITY-GRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQKFMEPSMMAGAVNVFE--------DNEGSIKLATNKHASRRTKHIDVKHHMVRD 1095
            W+KA +  +  +++N        P  +       ++K K    G+I +YK RLV +G+ Q   V YT+ Y P     S+R  LA AA +D E+   D K AFL   +DEE+Y+ +P+            +  D+       ++GS      L  +R    R  KIS    +  Y LR          +G+ T        S   E  N  +K ++   P+REAVG LM+ A ++  DI  A   V+R+ ENPG  H +AV +I++Y   T  +GI Y G    GL +  Y+DSD+    DTRRS SG V +LA GA+ W S+ Q +    T+EAE VA S+A ++ +    +  +V V +        DN+GSIKL  N    +RTKHIDV+ H +R+
Sbjct:  503 WQKAVDEELASLMKNGTWCEADLPPGRQAISAKWVFKLKRGPSGEIVRYKARLVARGYAQRPNVDYTETYSPVVRYESVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMTVPDGAPNAGQVTAVDKVMDYLMTEFEVTIGSTEYFIGLEIKRDCIVRTIKIS----QRNYLLRVAEKIGLADAKGISTPAESRVYLSTTSEDNN--DKRDMEKVPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGLEHWQAVKRIIRYAKETAAYGIVYDGHNTDGLII--YSDSDYATDPDTRRSTSGYVTVLAGGAVSWMSQRQRIVALSTTEAEYVAASDATKEAIWIRRLLESVGVNKKGPIEMRLDNQGSIKLIKNPEFHKRTKHIDVRFHYIRE 892          
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A438GKY6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GKY6_VITVI)

HSP 1 Score: 170 bits (431), Expect = 9.290e-43
Identity = 135/440 (30.68%), Postives = 211/440 (47.95%), Query Frame = 1
Query:    1 PRNRRQAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEE----------LYIE-----------IPEEYQDFPGAANPRSLGSLTA-------RRRWWKISTSRKEA-------RYWLRRGLPTFS---KADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEPSMMAGAVN----VFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLADDQP 1158
            P +  QAM   E + W  A +  M  M  N V      P      G   ++K K +  G IE+YK +LV +GF Q EG+ YT+ + P     S+R+ LA  A  D EL+  D K AFL  +++EE          LY++           + E  Q      + + +G  +        R R+  I    +E        R+ ++   P+ S   K D       P+N  E+E+++N PY  AVG LM+    T  DIA A   + R+  NPG  H KA  K+M+YL  TKD+ + Y R+   L +  Y+DSDF  C+D+R+S SG + +LA GAI W S  Q +T + T EAE ++  EA      ++ F+    +  +++    ++ DN  ++ +A N  +  R+KHID+K+  +R+    + V +  + T L    P
Sbjct:  885 PESFSQAMNCKESELWYNAMKDEMSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKAKLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVSGSKVCFFVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETHINKVLERFRMKNCSPSVSPIVKGDSFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMY-RRTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADP 1323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9IFW4_FAGSY1.770e-4933.02CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A5AHF5_VITVI3.810e-4732.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7K690_LASNI2.410e-4531.71Retrovirus-related pol polyprotein from transposon... [more]
A0A438CBX1_VITVI4.750e-4532.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A438D4E2_VITVI6.910e-4431.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Z0A825_9AGAM7.730e-4431.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5ASB2_VITVI1.440e-4332.36Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A6H5L0Z9_9PHAE3.810e-4333.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7KHD5_LASNI7.980e-4333.42Retrotransposon ty1-copia subclass n=1 Tax=Lasius ... [more]
A0A438GKY6_VITVI9.290e-4330.68Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16150contigH-elongata_contig16150:6355..7596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue3.9e-37
Seed eggNOG ortholog67593.Physo130920
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH7N@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1197
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16150.3927.1prot_H-elongata_contig16150.3927.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16150 6376..7596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.7568219-UTR-H-elongata_contig16150:6354..63751622929946.7568219-UTR-H-elongata_contig16150:6354..6375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16150 6355..6375 +
1691679218.8928666-UTR-H-elongata_contig16150:6354..63751691679218.8928666-UTR-H-elongata_contig16150:6354..6375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16150 6355..6375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.7755985-CDS-H-elongata_contig16150:6375..67741622929946.7755985-CDS-H-elongata_contig16150:6375..6774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16150 6376..6774 +
1691679218.9028726-CDS-H-elongata_contig16150:6375..67741691679218.9028726-CDS-H-elongata_contig16150:6375..6774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16150 6376..6774 +
1622929946.7907307-CDS-H-elongata_contig16150:6819..75961622929946.7907307-CDS-H-elongata_contig16150:6819..7596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16150 6820..7596 +
1691679218.910759-CDS-H-elongata_contig16150:6819..75961691679218.910759-CDS-H-elongata_contig16150:6819..7596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16150 6820..7596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16150.3927.1

>prot_H-elongata_contig16150.3927.1 ID=prot_H-elongata_contig16150.3927.1|Name=mRNA_H-elongata_contig16150.3927.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=392bp
MESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQ
DGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGE
LRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRSLGSLTARRRWWK
ISTSRKEARYWLRRGLPTFSKADEPRNPEEKEEIRNFPYREAVGVLMWTA
TMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQG
CGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTS
EAENVALSEAVQKFMEPSMMAGAVNVFEDNEGSIKLATNKHASRRTKHID
VKHHMVRDASDVQTVRVVLLITHLADDQPDLVAFCSWSAGK*
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mRNA from alignment at H-elongata_contig16150:6355..7596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16150.3927.1 ID=mRNA_H-elongata_contig16150.3927.1|Name=mRNA_H-elongata_contig16150.3927.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1242bp|location=Sequence derived from alignment at H-elongata_contig16150:6355..7596+ (Himanthalia elongata Himel1 dioecious)
CCGAGAAATCGGCGGCAGGCGATGGAATCGCTGGAATGGGATAAATGGCG AAAAGCTGAGGAAACATATATGTGTGGCATGGTCGAGAACTGCGTTTGTA AGCGGACGACTCGGCCGAAGGATAAGCTCGTGGCTGGCAAAACATTGCTC TACAAGCGAAAGGTCGAACAGGACGGCAAGATCGAGAAATACAAGTGCCG ACTTGTAACTCAAGGGTTCTGGCAAGTGGAAGGTGTGCACTACACGAAAA AGTACTTGCCCACGCCAGCGACCGCGTCAATCCGGATGTTTTTGGCGACG GCAGCGGCCAAGGACGGAGAGCTGCGCCATTTTGACGCAAAGCAGGCGTT CTTGAAGGTGGACATCGATGAGGAGTTGTATATTGAGATCCCGGAGGAGT ACCAGGATTTTCCGGGGGCAGTGGGATAGCTGAACAAGGCCATTTACGAT TTCGAGCACGCAAAGGCGAACCCGCGTTCCTTAGGGTCGTTGACGGCAAG GCGGAGATGGTGGAAAATTTCAACATCAAGAAAGGAAGCAAGATACTGGC TACGTCGGGGGTTGCCAACATTCTCAAAGGCGGACGAGCCGCGAAACCCG GAGGAGAAGGAGGAAATAAGGAATTTTCCATACCGGGAGGCAGTGGGGGT GCTTATGTGGACGGCGACGATGACATGGATGGACATTGCAAGTGCAACAC GCGCTGTGACCAGGTTCTACGAAAACCCTGGGCCGGCGCATAAGAAGGCA GTGATGAAGATCATGCAGTATCTCCTCCACACAAAGGATTGGGGGATCAC ATACGGTAGACAGGGTTGTGGACTCCGCATGGAGGCATACACGGACTCGG ATTTCAGAGCCTGTCTGGATACGAGACGATCGATGTCAGGTGCGGTGTTG ATGCTGGCGAAGGGGGCGATCGGCTGGTACTCAAGGATGCAAGAAGTGAC ACCATCGGGTACCTCGGAGGCAGAGAACGTTGCTTTATCAGAGGCGGTCC AGAAGTTTATGGAACCATCGATGATGGCTGGTGCAGTGAATGTGTTCGAG GATAATGAGGGGTCTATCAAGCTGGCCACCAACAAGCATGCTAGTCGTAG GACAAAGCACATTGATGTGAAACATCATATGGTGAGGGACGCGTCTGACG TGCAAACGGTTAGAGTAGTGTTGTTGATCACACATTTAGCAGACGATCAA CCGGATTTGGTTGCATTCTGCTCGTGGTCAGCTGGAAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig16150:6355..7596+

>mRNA_H-elongata_contig16150.3927.1 ID=mRNA_H-elongata_contig16150.3927.1|Name=mRNA_H-elongata_contig16150.3927.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2352bp|location=Sequence derived from alignment at H-elongata_contig16150:6355..7596+ (Himanthalia elongata Himel1 dioecious)
ATGGAATCGCTGGAATGGGATAAATGGCGAAAAGCTGAGGAAACATATAT
GTGTGGCATGGTCGAGAACTGCGTTTGTAAGCGGACGACTCGGCCGAAGG
ATAAGCTCGTGGCTGGCAAAACATTGCTCTACAAGCGAAAGGTCGAACAG
GACGGCAAGATCGAGAAATACAAGTGCCGACTTGTAACTCAAGGGTTCTG
GCAAGTGGAAGGTGTGCACTACACGAAAAAGTACTTGCCCACGCCAGCGA
CCGCGTCAATCCGGATGTTTTTGGCGACGGCAGCGGCCAAGGACGGAGAG
CTGCGCCATTTTGACGCAAAGCAGGCGTTCTTGAAGGTGGACATCGATGA
GGAGTTGTATATTGAGATCCCGGAGGAGTACCAGGATTTTCCGGGGGCAA
TGGAATCGCTGGAATGGGATAAATGGCGAAAAGCTGAGGAAACATATATG
TGTGGCATGGTCGAGAACTGCGTTTGTAAGCGGACGACTCGGCCGAAGGA
TAAGCTCGTGGCTGGCAAAACATTGCTCTACAAGCGAAAGGTCGAACAGG
ACGGCAAGATCGAGAAATACAAGTGCCGACTTGTAACTCAAGGGTTCTGG
CAAGTGGAAGGTGTGCACTACACGAAAAAGTACTTGCCCACGCCAGCGAC
CGCGTCAATCCGGATGTTTTTGGCGACGGCAGCGGCCAAGGACGGAGAGC
TGCGCCATTTTGACGCAAAGCAGGCGTTCTTGAAGGTGGACATCGATGAG
GAGTTGTATATTGAGATCCCGGAGGAGTACCAGGATTTTCCGGGGGCAGC
GAACCCGCGTTCCTTAGGGTCGTTGACGGCAAGGCGGAGATGGTGGAAAA
TTTCAACATCAAGAAAGGAAGCAAGATACTGGCTACGTCGGGGGTTGCCA
ACATTCTCAAAGGCGGACGAGCCGCGAAACCCGGAGGAGAAGGAGGAAAT
AAGGAATTTTCCATACCGGGAGGCAGTGGGGGTGCTTATGTGGACGGCGA
CGATGACATGGATGGACATTGCAAGTGCAACACGCGCTGTGACCAGGTTC
TACGAAAACCCTGGGCCGGCGCATAAGAAGGCAGTGATGAAGATCATGCA
GTATCTCCTCCACACAAAGGATTGGGGGATCACATACGGTAGACAGGGTT
GTGGACTCCGCATGGAGGCATACACGGACTCGGATTTCAGAGCCTGTCTG
GATACGAGACGATCGATGTCAGGTGCGGTGTTGATGCTGGCGAAGGGGGC
GATCGGCTGGTACTCAAGGATGCAAGAAGTGACACCATCGGGTACCTCGG
AGGCAGAGAACGTTGCTTTATCAGAGGCGGTCCAGAAGTTTATGGAACCA
TCGATGATGGCTGGTGCAGTGAATGTGTTCGAGGATAATGAGGGGTCTAT
CAAGCTGGCCACCAACAAGCATGCTAGTCGTAGGACAAAGCACATTGATG
TGAAACATCATATGGTGAGGGACGCGTCTGACGTGCAAACGGTTAGAGTA
GTGTTGTTGATCACACATTTAGCAGACGATCAACCGGATTTGGTTGCATT
CTGCTCGTGGTCAGCTGGAAAATAAGCGAACCCGCGTTCCTTAGGGTCGT
TGACGGCAAGGCGGAGATGGTGGAAAATTTCAACATCAAGAAAGGAAGCA
AGATACTGGCTACGTCGGGGGTTGCCAACATTCTCAAAGGCGGACGAGCC
GCGAAACCCGGAGGAGAAGGAGGAAATAAGGAATTTTCCATACCGGGAGG
CAGTGGGGGTGCTTATGTGGACGGCGACGATGACATGGATGGACATTGCA
AGTGCAACACGCGCTGTGACCAGGTTCTACGAAAACCCTGGGCCGGCGCA
TAAGAAGGCAGTGATGAAGATCATGCAGTATCTCCTCCACACAAAGGATT
GGGGGATCACATACGGTAGACAGGGTTGTGGACTCCGCATGGAGGCATAC
ACGGACTCGGATTTCAGAGCCTGTCTGGATACGAGACGATCGATGTCAGG
TGCGGTGTTGATGCTGGCGAAGGGGGCGATCGGCTGGTACTCAAGGATGC
AAGAAGTGACACCATCGGGTACCTCGGAGGCAGAGAACGTTGCTTTATCA
GAGGCGGTCCAGAAGTTTATGGAACCATCGATGATGGCTGGTGCAGTGAA
TGTGTTCGAGGATAATGAGGGGTCTATCAAGCTGGCCACCAACAAGCATG
CTAGTCGTAGGACAAAGCACATTGATGTGAAACATCATATGGTGAGGGAC
GCGTCTGACGTGCAAACGGTTAGAGTAGTGTTGTTGATCACACATTTAGC
AGACGATCAACCGGATTTGGTTGCATTCTGCTCGTGGTCAGCTGGAAAAT
AA
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