mRNA_H-elongata_contig161222.3913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161222.3913.1
Unique NamemRNA_H-elongata_contig161222.3913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.390e-24
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:   47 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 151
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BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.530e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  126 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPA 230
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.900e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  190 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 294
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.940e-22
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD +AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  538 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPA 642
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.960e-22
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD +AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  494 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPA 598
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.010e-22
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   16 GFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  844 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 944
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.730e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  903 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1007
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.730e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct: 1012 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1116
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.760e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct: 1282 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1386
[Close]
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.770e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 321
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct: 1302 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1406
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE5.390e-2449.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE1.530e-2249.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE1.900e-2249.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE1.940e-2249.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE1.960e-2249.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE9_9PHAE2.010e-2250.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.730e-2249.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE2.730e-2249.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.760e-2249.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.770e-2249.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161222contigH-elongata_contig161222:139..462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score81.6
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog5111.M1VVF5
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.292852-CDS-H-elongata_contig161222:138..4621622929945.292852-CDS-H-elongata_contig161222:138..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161222 139..462 +
1691679218.34293-CDS-H-elongata_contig161222:138..4621691679218.34293-CDS-H-elongata_contig161222:138..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161222 139..462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161222.3913.1prot_H-elongata_contig161222.3913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161222 139..462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161222.3913.1

>prot_H-elongata_contig161222.3913.1 ID=prot_H-elongata_contig161222.3913.1|Name=mRNA_H-elongata_contig161222.3913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
ELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAV
RSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVT
KTSTIPSA
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mRNA from alignment at H-elongata_contig161222:139..462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161222.3913.1 ID=mRNA_H-elongata_contig161222.3913.1|Name=mRNA_H-elongata_contig161222.3913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig161222:139..462+ (Himanthalia elongata Himel1 dioecious)
GAGCTCGAGGCGAAGGGTTTTCAGAGATCTCAAGCCGACCCATGTGTGTT
CCGGCGGATTCTCCACGGGATAGTGGTAGTCGTCATCGTGGTCTACGTCG
ACGACCTGCTGGTTGCTAGTGGGATGAAACGTGACGAGGAGCAAGCGGTG
AGGAGCCTGTGCTCCTGTTTCCCCATCAAGGATCTAGGGGAGGCTTCATA
TTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGAAGT
TCGACCAGGATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGACG
AAGACCAGCACCATCCCGTCTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig161222:139..462+

>mRNA_H-elongata_contig161222.3913.1 ID=mRNA_H-elongata_contig161222.3913.1|Name=mRNA_H-elongata_contig161222.3913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig161222:139..462+ (Himanthalia elongata Himel1 dioecious)
GAGCTCGAGGCGAAGGGTTTTCAGAGATCTCAAGCCGACCCATGTGTGTT
CCGGCGGATTCTCCACGGGATAGTGGTAGTCGTCATCGTGGTCTACGTCG
ACGACCTGCTGGTTGCTAGTGGGATGAAACGTGACGAGGAGCAAGCGGTG
AGGAGCCTGTGCTCCTGTTTCCCCATCAAGGATCTAGGGGAGGCTTCATA
TTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGAAGT
TCGACCAGGATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGACG
AAGACCAGCACCATCCCGTCTGCGGAGCTCGAGGCGAAGGGTTTTCAGAG
ATCTCAAGCCGACCCATGTGTGTTCCGGCGGATTCTCCACGGGATAGTGG
TAGTCGTCATCGTGGTCTACGTCGACGACCTGCTGGTTGCTAGTGGGATG
AAACGTGACGAGGAGCAAGCGGTGAGGAGCCTGTGCTCCTGTTTCCCCAT
CAAGGATCTAGGGGAGGCTTCATATTACCTGGGATGCCACATCACGCGGG
ACCGGAACGCCGGGACACTGAAGTTCGACCAGGATCAGTACATACAGACT
GTGGCGGAACGTTTTGGCGTGACGAAGACCAGCACCATCCCGTCTGCG
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