mRNA_H-elongata_contig16117.3910.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16117.3910.1
Unique NamemRNA_H-elongata_contig16117.3910.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 7.600e-7
Identity = 27/52 (51.92%), Postives = 31/52 (59.62%), Query Frame = 3 
Query:   99 MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 254
            MA  DR  L ALF A +G  WRK   W T+  L  W+GV VNA+GRV  L L
Sbjct:    1 MASTDRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSL 52
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BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7G3R3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R3_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 8.630e-6
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 3 
Query:   99 MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 254
            MA  DR+ L  LF   +G  WR+K  W T+  L  W+GV VNA+GRV  L L
Sbjct:  282 MASADRDALITLFHETRGANWREKGNWGTSEVLGTWYGVDVNAEGRVVKLSL 333
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BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.440e-5
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 3 
Query:   99 MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALILA 257
            M   DR  L ALF +  G  W+    W T+A+L +W+GV+VN DGRV+ L L+
Sbjct:    1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRLS 53
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BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: A0A7X3WE75_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WE75_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.360e-5
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 3 
Query:  111 DREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 254
            DR  L AL+++  G  W++   W T+  L  W+GV VNA GRV++L+L
Sbjct:  282 DRSSLIALYISTDGGNWKQSANWLTDEPLSTWYGVGVNAAGRVDSLVL 329
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BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.150e-5
Identity = 25/55 (45.45%), Postives = 30/55 (54.55%), Query Frame = 3 
Query:   90 PSTMAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 254
            P   A+ DR  L  LF   KG  W     W T++ L EW+GV VNA+GRV  L L
Sbjct:  310 PVRDARTDRTVLMELFNTTKGPSWTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDL 364
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BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: A0A6H5KJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG9_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 6.520e-5
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 3 
Query:  105 QVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 254
            + DR  L  LF   KG  W+    W +++ L EW+GV VNA+GRV  L L
Sbjct:   59 ETDRAALMELFNTTKGPSWKTSTAWGSSSFLGEWYGVTVNAEGRVTKLHL 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FUH5_ECTSI7.600e-751.92Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7G3R3_ECTSI8.630e-648.08Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA4_ECTSI1.440e-545.28Hypothetical leucine rich repeat protein (Partial)... [more]
A0A7X3WE75_9BACT2.360e-543.75BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
D7G450_ECTSI4.150e-545.45Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KJG9_9PHAE6.520e-544.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16117contigH-elongata_contig16117:2206..2655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog2880.D7FPS8
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size258
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16117.3910.1prot_H-elongata_contig16117.3910.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16117 2206..2364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.9841294-CDS-H-elongata_contig16117:2205..23641622929944.9841294-CDS-H-elongata_contig16117:2205..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16117 2206..2364 -
1691679218.2117672-CDS-H-elongata_contig16117:2205..23641691679218.2117672-CDS-H-elongata_contig16117:2205..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16117 2206..2364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.0026977-UTR-H-elongata_contig16117:2364..23771622929945.0026977-UTR-H-elongata_contig16117:2364..2377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16117 2365..2377 -
1691679218.2263713-UTR-H-elongata_contig16117:2364..23771691679218.2263713-UTR-H-elongata_contig16117:2364..2377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16117 2365..2377 -
1622929945.0177574-UTR-H-elongata_contig16117:2570..26551622929945.0177574-UTR-H-elongata_contig16117:2570..2655Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16117 2571..2655 -
1691679218.2338269-UTR-H-elongata_contig16117:2570..26551691679218.2338269-UTR-H-elongata_contig16117:2570..2655Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16117 2571..2655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16117.3910.1

>prot_H-elongata_contig16117.3910.1 ID=prot_H-elongata_contig16117.3910.1|Name=mRNA_H-elongata_contig16117.3910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEAL
ILA
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mRNA from alignment at H-elongata_contig16117:2206..2655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16117.3910.1 ID=mRNA_H-elongata_contig16117.3910.1|Name=mRNA_H-elongata_contig16117.3910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig16117:2206..2655- (Himanthalia elongata Himel1 dioecious)
ATTCCGAAGACCTCCTGCGTCACATTTTTTCATCCTCATATCTCGAGGAT
CCTTTTTTGAGGGGCAATCAATAGAGTTACGTACGGTAAGTGTTTTCAGT
TAACTTCCGTGTCGTCGTTTTGTCCGCTCCTTCCTCTCTGTCTTGGAATT
TTTTCCCATTCGTAATATTACAACTACTACTGCAACTCTATGTTTGTGAT
CAGGACACAGTAGGCTTGACCTGGCTTTGCTTTTTTCTTCGGCTTTACTT
CCCTCGATGGGGTCAATAAACCCCCTAGGTTACCATCAACGATGGCCCAA
GTCGATCGTGAGGGACTCCGTGCACTGTTTTTGGCAGCCAAGGGGCACGG
CTGGAGAAAAAAGCAAGGCTGGTGCACAAATGCAGAGTTACGGGAATGGT
TTGGAGTTTTCGTCAACGCGGATGGCCGGGTAGAGGCACTAATATTAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig16117:2206..2655-

>mRNA_H-elongata_contig16117.3910.1 ID=mRNA_H-elongata_contig16117.3910.1|Name=mRNA_H-elongata_contig16117.3910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig16117:2206..2655- (Himanthalia elongata Himel1 dioecious)
ATGGCCCAAGTCGATCGTGAGGGACTCCGTGCACTGTTTTTGGCAGCCAA
GGGGCACGGCTGGAGAAAAAAGCAAGGCTGGTGCACAAATGCAGAGTTAC
GGGAATGGTTTGGAGTTTTCGTCAACGCGGATGGCCGGGTAGAGGCACTA
ATATTAGCAATGGCCCAAGTCGATCGTGAGGGACTCCGTGCACTGTTTTT
GGCAGCCAAGGGGCACGGCTGGAGAAAAAAGCAAGGCTGGTGCACAAATG
CAGAGTTACGGGAATGGTTTGGAGTTTTCGTCAACGCGGATGGCCGGGTA
GAGGCACTAATATTAGCA
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