mRNA_H-elongata_contig161165.3909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161165.3909.1
Unique NamemRNA_H-elongata_contig161165.3909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161165.3909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161165contigH-elongata_contig161165:900..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.9247954-CDS-H-elongata_contig161165:899..12051622929944.9247954-CDS-H-elongata_contig161165:899..1205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161165 900..1205 +
1691679218.1895504-CDS-H-elongata_contig161165:899..12051691679218.1895504-CDS-H-elongata_contig161165:899..1205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161165 900..1205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.9437594-UTR-H-elongata_contig161165:1205..13511622929944.9437594-UTR-H-elongata_contig161165:1205..1351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161165 1206..1351 +
1691679218.1989958-UTR-H-elongata_contig161165:1205..13511691679218.1989958-UTR-H-elongata_contig161165:1205..1351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161165 1206..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161165.3909.1prot_H-elongata_contig161165.3909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161165 900..1205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161165.3909.1

>prot_H-elongata_contig161165.3909.1 ID=prot_H-elongata_contig161165.3909.1|Name=mRNA_H-elongata_contig161165.3909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
TVARLVGIATDRERPSSFVVVVEDQDSENDDHWHKSHCSDETLPASPEIV
DADTEAGAGVFLPCIVAKVGSAGSADQIAAKKTTRVEAKETGARYSGKRT
Q*
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mRNA from alignment at H-elongata_contig161165:900..1351+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161165.3909.1 ID=mRNA_H-elongata_contig161165.3909.1|Name=mRNA_H-elongata_contig161165.3909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=452bp|location=Sequence derived from alignment at H-elongata_contig161165:900..1351+ (Himanthalia elongata Himel1 dioecious)
ACCGTCGCGCGCCTTGTGGGAATCGCCACGGATCGGGAGCGACCGAGCTC
GTTCGTCGTGGTCGTCGAAGACCAAGACTCAGAAAACGACGACCACTGGC
ACAAGAGCCACTGCAGCGACGAGACCCTCCCGGCGTCTCCCGAGATCGTT
GACGCTGATACCGAAGCGGGAGCCGGCGTTTTTCTCCCCTGCATTGTTGC
TAAAGTGGGTTCGGCCGGGTCCGCGGACCAGATCGCGGCGAAGAAGACCA
CACGAGTAGAGGCGAAGGAGACCGGCGCAAGATATTCAGGAAAGCGCACC
CAGTAAATCTAGTATCTATTATCTCTTTCTATTATCTTTTTTGTGTACCA
TTGCTGTGGGCATGGAGCTGGTGCCGTCACTTGCCAGGCACACTCACGAG
ATGCCTGTGGTGGTTGGTTGTCGAGAGGACGGAGGCGTTTTTACCGTGAT
AC
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Coding sequence (CDS) from alignment at H-elongata_contig161165:900..1351+

>mRNA_H-elongata_contig161165.3909.1 ID=mRNA_H-elongata_contig161165.3909.1|Name=mRNA_H-elongata_contig161165.3909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig161165:900..1351+ (Himanthalia elongata Himel1 dioecious)
ACCGTCGCGCGCCTTGTGGGAATCGCCACGGATCGGGAGCGACCGAGCTC
GTTCGTCGTGGTCGTCGAAGACCAAGACTCAGAAAACGACGACCACTGGC
ACAAGAGCCACTGCAGCGACGAGACCCTCCCGGCGTCTCCCGAGATCGTT
GACGCTGATACCGAAGCGGGAGCCGGCGTTTTTCTCCCCTGCATTGTTGC
TAAAGTGGGTTCGGCCGGGTCCGCGGACCAGATCGCGGCGAAGAAGACCA
CACGAGTAGAGGCGAAGGAGACCGGCGCAAGATATTCAGGAAAGCGCACC
CAGTAAACCGTCGCGCGCCTTGTGGGAATCGCCACGGATCGGGAGCGACC
GAGCTCGTTCGTCGTGGTCGTCGAAGACCAAGACTCAGAAAACGACGACC
ACTGGCACAAGAGCCACTGCAGCGACGAGACCCTCCCGGCGTCTCCCGAG
ATCGTTGACGCTGATACCGAAGCGGGAGCCGGCGTTTTTCTCCCCTGCAT
TGTTGCTAAAGTGGGTTCGGCCGGGTCCGCGGACCAGATCGCGGCGAAGA
AGACCACACGAGTAGAGGCGAAGGAGACCGGCGCAAGATATTCAGGAAAG
CGCACCCAGTAA
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