mRNA_H-elongata_contig161002.3903.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161002.3903.1
Unique NamemRNA_H-elongata_contig161002.3903.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI)

HSP 1 Score: 76.6 bits (187), Expect = 1.330e-13
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILKTGVSTDYIRTATV--------ASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDGVLP 420
            C AH +DL L+D+G  ++ + TLK    +VKF+ NHH T A +  H++L L+ P  TRFAT+ I   R+L+     D +R ATV        A+ +A     ++E          FW E +   QL  P+  +LR+ D   P
Sbjct:  292 CVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHSDLELLKPGDTRFATSFITLERLLEVK---DSLR-ATVGHPDWTSWAAAQAPATRALAEDIQELVFTAAFWKEASEIAQLSIPIVKVLRLADCPAP 429          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388L9Q9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9Q9_CHABU)

HSP 1 Score: 74.7 bits (182), Expect = 6.790e-13
Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = 1
Query:    1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLR--MGDGVLP 420
            R+  + CAAH   LLL+D+  LD+   T+KR + +VKF++NHH+T++F  S  ++L L+ P   RF +   +  RI  +  V  D +    V   +A  R         D +        +W E+   V++MEPLY LLR  + DG  P
Sbjct:  319 RIPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGSMYRMLERIHNRRAVFKDMVDVTNVGKWKAMRRSSAKPQEKADLVYFTLRRDAWWMELRKVVEMMEPLYLLLRRMVKDGTAP 467          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LZB2_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LZB2_CHABU)

HSP 1 Score: 70.5 bits (171), Expect = 1.970e-11
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV------GEFWFEVNVFVQLMEPLYALLRMGD 408
            R+  + CAAH   LLL+D+  LD+   T+KR + +VKF++NHH+T++F  S  ++L L+ P   RF +   +  RI  +  V  D +    V   +A  R   +++ A   LV        +W E+   V++MEPLY LLR  D
Sbjct:  400 RIPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGSVYRMLERIHNRRAVLKDVVDATNVGKWKAM-RWSSAKLQAKADLVYFTLRRDAWWTELRKVVEMMEPLYLLLRRMD 542          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843V1P5_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V1P5_COLES)

HSP 1 Score: 70.5 bits (171), Expect = 2.050e-11
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVS----TDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
            CAAH VDL+LK++G L      ++   K+ +++ NHH   A+    T   L+ P  TRFATN I    +LK   G+     TD    +T A   A G++V      G      FW  V   VQ+++PLY +LR+ DG
Sbjct:  369 CAAHCVDLMLKEIGTLRPVKTVVEAGQKITRYIYNHHVVLAWMRESTGGELLRPAITRFATNFIALQSLLKHKDGLKRMFRTDRWMQSTFAGT-ADGKDV-----EGIVCNANFWDRVFKLVQIIKPLYEVLRVVDG 499          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LAH1_CHABU (RNA-directed DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAH1_CHABU)

HSP 1 Score: 70.5 bits (171), Expect = 2.150e-11
Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV------GEFWFEVNVFVQLMEPLYALLRMGD 408
            R+  + CAAH   LLL+D+  LD+   T+KR + +VKF++NHH+T++F  S  ++L L+ P   RF +   +  RI  +  V  D + +  V   +A  R   +++ A   LV        +W E+   V++MEPLY LLR  D
Sbjct:  107 RIPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLQPTEVRFGSVYRMLERIHNRRAVLKDMVDSMNVGKWKAM-RWSSAKLQAKADLVYFTLQRDAWWTELRKVVEMMEPLYLLLRRMD 249          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388JUG5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JUG5_CHABU)

HSP 1 Score: 69.7 bits (169), Expect = 3.910e-11
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLRMGD 408
            R+  + CAAH   LLL+D+  LD+   T+KR + +VKF++NHHST++   S + +L L+ P   RF +  ++  R+L +  V +D +     A             S  D +        +W E+   V +MEPLY+LLR  D
Sbjct:  578 RIPWVPCAAHCCSLLLQDISKLDWVKRTVKRGHTIVKFIRNHHSTNSLMMSMNDSLTLLRPMEVRFGSVYMMLERLLNRKAVLSDMVDRKNAARWTGIRWSTAKLKSKADLVYFTMRRDGWWMELKKVVDVMEPLYSLLRRMD 720          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843TB08_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TB08_COLES)

HSP 1 Score: 69.3 bits (168), Expect = 5.120e-11
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVSTDYIRTATVASVRAA---GREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
            CAAH VDL+LK++G L      +    K+ +F+ NHH   A+    T   L+ P  T FATN +    +LK   G+   +     + S  A+   G+EV S +++ +     FW  V   +Q++EPLY +LR+ DG
Sbjct:   88 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPAVTCFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFASTSDGKEVESIVNSSN-----FWDRVFKLIQIIEPLYEVLRVVDG 218          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843VI85_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VI85_COLES)

HSP 1 Score: 69.3 bits (168), Expect = 5.240e-11
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK------------TGVSTDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
            CAAH VDL+LK++G L      +    K+ +F+ NHH   A+    T   L+ P  TRFATN +    +LK              + +++  T+        G+EV   +++ +     FW  V   VQ++EPLY +LR+ DG
Sbjct:  445 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFANTSD-------GKEVEGIVNSSN-----FWDRVFKLVQIIEPLYEVLRVVDG 575          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LVF2_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LVF2_CHABU)

HSP 1 Score: 69.3 bits (168), Expect = 5.360e-11
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLRMGD 408
            R+  + CAAH   LLL+D+  LD+   T+KR + +VKF++NHHST++   S   +L L+ P   RF +  ++  R+L +  V +D +     A             S  D +        +W E+   V +MEPLY+LLR  D
Sbjct:  990 RIPWVPCAAHCCSLLLRDISKLDWVKSTVKRGHTIVKFIRNHHSTNSLMMSMDDSLTLLCPTKVRFGSVYMMLERLLNRKAVLSDMVDRKNAARWTGIRWSTTKLKSKADLVYFTMRRDGWWTELKKVVDVMEPLYSLLRRMD 1132          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843TN79_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TN79_COLES)

HSP 1 Score: 68.9 bits (167), Expect = 7.130e-11
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVSTDYIRTATVASVRAA---GREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
            CAAH VDL+LK++G L      +    K+  F+ NHH   A+    T   L+ P  TRFATN +    +LK   G+   +     + S  A+   G+EV   +++ +     FW  V   VQ++EPLY +LR+ DG
Sbjct:  325 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITHFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFASTSDGKEVEGIVNSSN-----FWDRVFKLVQIIEPLYEVLRVVDG 455          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1IK20_KLENI1.330e-1334.51DUF659 domain-containing protein n=1 Tax=Klebsormi... [more]
A0A388L9Q9_CHABU6.790e-1333.56DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LZB2_CHABU1.970e-1134.72DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A843V1P5_COLES2.050e-1135.77BED-type domain-containing protein n=1 Tax=Colocas... [more]
A0A388LAH1_CHABU2.150e-1134.72RNA-directed DNA polymerase n=1 Tax=Chara braunii ... [more]
A0A388JUG5_CHABU3.910e-1132.87Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A843TB08_COLES5.120e-1133.82Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A843VI85_COLES5.240e-1131.47BED-type domain-containing protein n=1 Tax=Colocas... [more]
A0A388LVF2_CHABU5.360e-1132.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A843TN79_COLES7.130e-1134.56Uncharacterized protein n=1 Tax=Colocasia esculent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161002contigH-elongata_contig161002:323..973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog4641.GSMUA_Achr11P13710_001
EggNOG free text desc.Protein of unknown function (DUF 659)
EggNOG OGs2CU6P@1,2RJJK@2759,37Z1G@33090,3GNGN@35493,3M5TQ@4447
COG Functional cat.S
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161002.3903.1prot_H-elongata_contig161002.3903.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161002 326..973 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.4683535-UTR-H-elongata_contig161002:322..3251622929944.4683535-UTR-H-elongata_contig161002:322..325Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161002 323..325 +
1691679217.963556-UTR-H-elongata_contig161002:322..3251691679217.963556-UTR-H-elongata_contig161002:322..325Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161002 323..325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.483738-CDS-H-elongata_contig161002:325..5661622929944.483738-CDS-H-elongata_contig161002:325..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161002 326..566 +
1691679217.977718-CDS-H-elongata_contig161002:325..5661691679217.977718-CDS-H-elongata_contig161002:325..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161002 326..566 +
1622929944.5008962-CDS-H-elongata_contig161002:797..9731622929944.5008962-CDS-H-elongata_contig161002:797..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161002 798..973 +
1691679217.9925282-CDS-H-elongata_contig161002:797..9731691679217.9925282-CDS-H-elongata_contig161002:797..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161002 798..973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161002.3903.1

>prot_H-elongata_contig161002.3903.1 ID=prot_H-elongata_contig161002.3903.1|Name=mRNA_H-elongata_contig161002.3903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES
HTNLRLITPCATRFATNVIVTMRILKTGVSTDYIRTATVASVRAAGREVV
SEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDGVLP
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mRNA from alignment at H-elongata_contig161002:323..973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161002.3903.1 ID=mRNA_H-elongata_contig161002.3903.1|Name=mRNA_H-elongata_contig161002.3903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig161002:323..973+ (Himanthalia elongata Himel1 dioecious)
AGAATGTCACGGATAAAGTGCGCAGCTCACGCTGTGGACCTGCTGCTCAA GGATCTCGGGAACCTCGACTTCTTCGCTGACACCCTCAAGCGCATCAACA AGGTCGTGAAGTTCGTCAAAAACCACCACAGCACCAGCGCCTTCTACGAG AGCCACACAAACCTCCGGTTGATTACCCCCTGCGCCACACGCTTCGCGAC CAACGTCATCGTGACCATGCGCATCCTGAAGACAGGTGTTTCAAGTGTTT GTTTCATAATTTGAAAAGACGAGAGTAAGGCAGGCAAATGTTTGTTTTTG TTTTTCGTTTGTTGTTTTGTGGTTCAAAACATGACTGCAACGCTGTATTT TGTTTTATATTATCCTCCCACTCATGTTTGCCGCTGCCGCTTCTGTTCTT CACGTGTTATGCGCATGAATACGAATGTCCAGATGAAGGTAGCTCTGAAG AACTTTGCCTGTGACCCGCGTACAGCGGACTATATCAGGACTGCGACAGT GGCCTCCGTTCGCGCGGCTGGCCGAGAAGTGGTGTCCGAGATCTCCGCGG GCGACGCGCTGGTGGGCGAGTTCTGGTTCGAGGTGAACGTTTTCGTGCAG CTGATGGAACCCCTCTATGCGCTCCTCCGGATGGGGGACGGGGTGCTACC G
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Coding sequence (CDS) from alignment at H-elongata_contig161002:323..973+

>mRNA_H-elongata_contig161002.3903.1 ID=mRNA_H-elongata_contig161002.3903.1|Name=mRNA_H-elongata_contig161002.3903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig161002:323..973+ (Himanthalia elongata Himel1 dioecious)
ATGTCACGGATAAAGTGCGCAGCTCACGCTGTGGACCTGCTGCTCAAGGA
TCTCGGGAACCTCGACTTCTTCGCTGACACCCTCAAGCGCATCAACAAGG
TCGTGAAGTTCGTCAAAAACCACCACAGCACCAGCGCCTTCTACGAGAGC
CACACAAACCTCCGGTTGATTACCCCCTGCGCCACACGCTTCGCGACCAA
CGTCATCGTGACCATGCGCATCCTGAAGACAGGTGTTTCAAATGTCACGG
ATAAAGTGCGCAGCTCACGCTGTGGACCTGCTGCTCAAGGATCTCGGGAA
CCTCGACTTCTTCGCTGACACCCTCAAGCGCATCAACAAGGTCGTGAAGT
TCGTCAAAAACCACCACAGCACCAGCGCCTTCTACGAGAGCCACACAAAC
CTCCGGTTGATTACCCCCTGCGCCACACGCTTCGCGACCAACGTCATCGT
GACCATGCGCATCCTGAAGACAGGTGTTTCAACGGACTATATCAGGACTG
CGACAGTGGCCTCCGTTCGCGCGGCTGGCCGAGAAGTGGTGTCCGAGATC
TCCGCGGGCGACGCGCTGGTGGGCGAGTTCTGGTTCGAGGTGAACGTTTT
CGTGCAGCTGATGGAACCCCTCTATGCGCTCCTCCGGATGGGGGACGGGG
TGCTACCGCGGACTATATCAGGACTGCGACAGTGGCCTCCGTTCGCGCGG
CTGGCCGAGAAGTGGTGTCCGAGATCTCCGCGGGCGACGCGCTGGTGGGC
GAGTTCTGGTTCGAGGTGAACGTTTTCGTGCAGCTGATGGAACCCCTCTA
TGCGCTCCTCCGGATGGGGGACGGGGTGCTACCG
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