mRNA_H-elongata_contig160964.3902.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160964.3902.1
Unique NamemRNA_H-elongata_contig160964.3902.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A097IUW9_PETFA (Aspartate aminotransferase n=4 Tax=Ectocarpales TaxID=2877 RepID=A0A097IUW9_PETFA)

HSP 1 Score: 157 bits (397), Expect = 1.180e-44
Identity = 74/94 (78.72%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +AARV SQ+K++IR MYSNPPVHGARLV EIL DDTLS+EWA ECKAMADRII+MR+ LR++LE L S RSWEHITDQIGMFCYTGLTQE+V K
Sbjct:  271 EAARVGSQLKIVIRAMYSNPPVHGARLVTEILSDDTLSQEWAGECKAMADRIIAMRAGLRENLEKLNSQRSWEHITDQIGMFCYTGLTQEEVLK 364
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BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: D7FVR8_ECTSI (Aspartate aminotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR8_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 9.960e-43
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +A RV SQ+K++IRPMYSNPPVHGARLV EIL D+ LS+EW+ ECKAMADRII+MR+ALR  LE L S RSWEHITDQIGMFCYTGLTQE+V K
Sbjct:  271 EAERVGSQIKIVIRPMYSNPPVHGARLVAEILSDEALSQEWSGECKAMADRIIAMRTALRGHLEGLKSGRSWEHITDQIGMFCYTGLTQEEVLK 364
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BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A097IUU0_9PHAE (Aspartate aminotransferase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUU0_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.970e-42
Identity = 70/94 (74.47%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +AARV SQ+KL+IRPMYSNPP++GARLV E+L D  L++EW+AECKAMADRIISMR+ LR  LE LGS RSWEHIT QIGMFCYTGLT E+V K
Sbjct:  272 EAARVTSQLKLVIRPMYSNPPIYGARLVTEVLSDPALTQEWSAECKAMADRIISMRTELRSCLERLGSKRSWEHITSQIGMFCYTGLTTEEVLK 365
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BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A097IUS3_9PHAE (Aspartate aminotransferase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IUS3_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 8.330e-41
Identity = 69/94 (73.40%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +AARV SQ+K++IRPMYSNPPV+GARLV EIL DD LS EW+ ECKAMADRIISMR++L+  LEAL S RSW+HIT QIGMFC+TGLT+E+V K
Sbjct:  271 EAARVSSQLKIVIRPMYSNPPVYGARLVTEILSDDALSLEWSGECKAMADRIISMRTSLQGHLEALKSTRSWDHITSQIGMFCFTGLTREEVLK 364
[Close]
BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A097IUS2_UNDPI (Aspartate aminotransferase n=4 Tax=Laminariales TaxID=2886 RepID=A0A097IUS2_UNDPI)

HSP 1 Score: 146 bits (369), Expect = 1.640e-40
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +AARV SQ+KL+IRPMYSNPPV+GARLV EIL D+ LS EW AECKAMADRI++MRS+LR  LE L S R W HITDQIGMFCYTGLTQ++V K
Sbjct:  271 EAARVGSQLKLVIRPMYSNPPVYGARLVSEILSDEVLSGEWTAECKAMADRIMAMRSSLRGHLEGLKSSRPWGHITDQIGMFCYTGLTQDEVLK 364
[Close]
BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A097IUU3_9PHAE (Aspartate aminotransferase n=6 Tax=Sargassum TaxID=3015 RepID=A0A097IUU3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.940e-39
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +AARV SQ+K I+RPMYSNPP++GARLV  IL D+ L+++WA ECKAMADRIISMRS L+  L ALGS RSWEHITDQIGMFCYTGLT+++V K
Sbjct:  288 EAARVTSQIKRIVRPMYSNPPLYGARLVAYILSDEGLTQQWALECKAMADRIISMRSLLKSHLLALGSTRSWEHITDQIGMFCYTGLTKDEVLK 381
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BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A835Z2I3_9STRA (Aspartate aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 4.450e-39
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +AARV SQ+KL+IRPMYSNPPVHGARLV EIL D  L  EWA EC+ MA+RI +MR ALR+SLE  GS R W HITDQIGMFCYTGLT E+V K
Sbjct:  304 EAARVESQLKLVIRPMYSNPPVHGARLVSEILSDAALRAEWAGECRGMAERITAMRVALRESLEKRGSARDWSHITDQIGMFCYTGLTTEEVLK 397
[Close]
BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A097IUV6_SARHM (Aspartate aminotransferase n=1 Tax=Sargassum hemiphyllum var. chinense TaxID=425012 RepID=A0A097IUV6_SARHM)

HSP 1 Score: 141 bits (355), Expect = 2.850e-38
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQV 276
            +AARV SQ+K I RPMYSNPP++GARLV +IL DD L++EWA ECKAMADRII+MRS L+  L  LGS RSWEHIT+QIGMFCYTGLT+++V
Sbjct:  287 EAARVTSQIKRIARPMYSNPPLYGARLVAQILSDDALAQEWALECKAMADRIIAMRSLLKSHLMDLGSGRSWEHITNQIGMFCYTGLTKDEV 378
[Close]
BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A0N4W082_HAEPC (Aminotran_1_2 domain-containing protein n=1 Tax=Haemonchus placei TaxID=6290 RepID=A0A0N4W082_HAEPC)

HSP 1 Score: 132 bits (332), Expect = 4.900e-38
Identity = 58/93 (62.37%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVR 279
            +AARV SQ+K++IRP+YSNPP+HGAR+VM+IL D  L ++W  + K MADRIISMR  LRD L   GS R+W+HITDQIGMFC+TG+  +QV+
Sbjct:   20 EAARVASQLKILIRPLYSNPPIHGARIVMKILNDPALYKQWLVDVKGMADRIISMRKQLRDLLAKEGSKRNWQHITDQIGMFCFTGINPQQVK 112
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BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Match: A0A182T5N3_9DIPT (Aspartate aminotransferase n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182T5N3_9DIPT)

HSP 1 Score: 135 bits (340), Expect = 8.140e-38
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 QAARVISQMKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSALRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK 282
            +A R +SQ+K++IRPMYSNPP+HGARLV EILGD  L +EW  + K MADRIIS+RS LR++L+ LGS R+W HITDQIGMFC+TG+ Q+Q  +
Sbjct:  105 EADRTMSQIKILIRPMYSNPPIHGARLVSEILGDKQLRQEWLGDVKLMADRIISVRSTLRNNLKELGSSRNWSHITDQIGMFCFTGMNQQQCER 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160964.3902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUW9_PETFA1.180e-4478.72Aspartate aminotransferase n=4 Tax=Ectocarpales Ta... [more]
D7FVR8_ECTSI9.960e-4376.60Aspartate aminotransferase n=1 Tax=Ectocarpus sili... [more]
A0A097IUU0_9PHAE3.970e-4274.47Aspartate aminotransferase n=1 Tax=Dictyopteris un... [more]
A0A097IUS3_9PHAE8.330e-4173.40Aspartate aminotransferase n=1 Tax=Desmarestia vir... [more]
A0A097IUS2_UNDPI1.640e-4074.47Aspartate aminotransferase n=4 Tax=Laminariales Ta... [more]
A0A097IUU3_9PHAE1.940e-3972.34Aspartate aminotransferase n=6 Tax=Sargassum TaxID... [more]
A0A835Z2I3_9STRA4.450e-3972.34Aspartate aminotransferase n=1 Tax=Tribonema minus... [more]
A0A097IUV6_SARHM2.850e-3871.74Aspartate aminotransferase n=1 Tax=Sargassum hemip... [more]
A0A0N4W082_HAEPC4.900e-3862.37Aminotran_1_2 domain-containing protein n=1 Tax=Ha... [more]
A0A182T5N3_9DIPT8.140e-3863.83Aspartate aminotransferase n=1 Tax=Anopheles macul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160964contigH-elongata_contig160964:362..1066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.4e-32
Seed eggNOG ortholog2880.D7FVR8
Preferred nameAAT1
KEGG rclassRC00006
KEGG koko:K14455
KEGG ReactionR00355,R00694,R00734,R00896,R02433,R02619,R05052
KEGG Pathwayko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00710,ko00950,ko00960,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04975,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00710,map00950,map00960,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04975
KEGG ModuleM00170,M00171
GOsGO:0000096,GO:0001300,GO:0001302,GO:0003674,GO:0003824,GO:0004069,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0005905,GO:0006082,GO:0006103,GO:0006107,GO:0006520,GO:0006528,GO:0006529,GO:0006530,GO:0006531,GO:0006532,GO:0006533,GO:0006534,GO:0006536,GO:0006538,GO:0006790,GO:0006807,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009066,GO:0009067,GO:0009068,GO:0009069,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0012506,GO:0016020,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019266,GO:0019752,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031201,GO:0031410,GO:0031974,GO:0031982,GO:0032502,GO:0032787,GO:0032991,GO:0034641,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043649,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045334,GO:0046394,GO:0046395,GO:0046686,GO:0046872,GO:0046914,GO:0048475,GO:0048869,GO:0050896,GO:0051186,GO:0070013,GO:0071704,GO:0071944,GO:0072329,GO:0072330,GO:0097708,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
EggNOG free text desc.Aspartate aminotransferase
EggNOG OGsCOG1448@1,KOG1411@2759
EC2.6.1.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionaspartate aminotransferase
Ec32 orthologEc-03_003270.1
Exons2
Model size285
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160964.3902.1prot_H-elongata_contig160964.3902.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160964 386..1066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.3921509-UTR-H-elongata_contig160964:361..3851622929944.3921509-UTR-H-elongata_contig160964:361..385Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160964 362..385 +
1691679217.9262228-UTR-H-elongata_contig160964:361..3851691679217.9262228-UTR-H-elongata_contig160964:361..385Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160964 362..385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.4081147-CDS-H-elongata_contig160964:385..4991622929944.4081147-CDS-H-elongata_contig160964:385..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160964 386..499 +
1691679217.9407427-CDS-H-elongata_contig160964:385..4991691679217.9407427-CDS-H-elongata_contig160964:385..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160964 386..499 +
1622929944.423472-CDS-H-elongata_contig160964:919..10661622929944.423472-CDS-H-elongata_contig160964:919..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160964 920..1066 +
1691679217.9524784-CDS-H-elongata_contig160964:919..10661691679217.9524784-CDS-H-elongata_contig160964:919..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160964 920..1066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160964.3902.1

>prot_H-elongata_contig160964.3902.1 ID=prot_H-elongata_contig160964.3902.1|Name=mRNA_H-elongata_contig160964.3902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MKLIIRPMYSNPPVHGARLVMEILGDDTLSREWAAECKAMADRIISMRSA
LRDSLEALGSPRSWEHITDQIGMFCYTGLTQEQVRK*
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mRNA from alignment at H-elongata_contig160964:362..1066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160964.3902.1 ID=mRNA_H-elongata_contig160964.3902.1|Name=mRNA_H-elongata_contig160964.3902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig160964:362..1066+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGCGCGAGTCATATCTCAGATGAAGCTCATCATCCGCCCTATGTA
CTCGAACCCTCCTGTCCATGGCGCAAGGCTCGTAATGGAGATCTTGGGGG
ACGATACCCTCTCCAGAGAATGGGCCGCAGAGTGCAAGGTGTAGGGCACA
TGACATAATTATGCACTATAGACAAGGTGCCAATCGTTAACAATTTAATG
CTTTATCAAGTACTGCTTGCAAATAGGACATCTCGAACAGCTTTAACAGC
TTTAACCTTTATCAGCTCTAATAGGTATCAGTATTCATAGCAAGTTAGGT
CGTCGTGATATTTTCACATGCACGAGTGCTGATAGCAGTAGAGCCCCTTG
AGGAGTGAGATGCTTTGCTTATGGAGATCGTCCTATGGAGGTTGAGATCG
TAATTATGAAGCATGCCAACTTCTGCAGCATGTCATGATTTGGCGTTGTT
CGTAGCTTTCTTTTTAACACTGCTTGTAACAGTCTACAGTGTAATCTTCA
GCTCTGCGAATTGAACACGGCTGCGTTGTTTGGTCCCTTCTGTACCTCGT
GATTAAAGGCGATGGCGGACCGGATTATCTCGATGCGATCAGCGCTAAGG
GACAGCCTCGAAGCTCTCGGATCTCCTCGATCATGGGAACATATAACCGA
CCAGATCGGCATGTTCTGCTACACTGGCCTGACACAGGAACAGGTGAGGA
AGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig160964:362..1066+

>mRNA_H-elongata_contig160964.3902.1 ID=mRNA_H-elongata_contig160964.3902.1|Name=mRNA_H-elongata_contig160964.3902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig160964:362..1066+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCTCATCATCCGCCCTATGTACTCGAACCCTCCTGTCCATGGCGC
AAGGCTCGTAATGGAGATCTTGGGGGACGATACCCTCTCCAGAGAATGGG
CCGCAGAGTGCAAGATGAAGCTCATCATCCGCCCTATGTACTCGAACCCT
CCTGTCCATGGCGCAAGGCTCGTAATGGAGATCTTGGGGGACGATACCCT
CTCCAGAGAATGGGCCGCAGAGTGCAAGGCGATGGCGGACCGGATTATCT
CGATGCGATCAGCGCTAAGGGACAGCCTCGAAGCTCTCGGATCTCCTCGA
TCATGGGAACATATAACCGACCAGATCGGCATGTTCTGCTACACTGGCCT
GACACAGGAACAGGTGAGGAAGTGAGCGATGGCGGACCGGATTATCTCGA
TGCGATCAGCGCTAAGGGACAGCCTCGAAGCTCTCGGATCTCCTCGATCA
TGGGAACATATAACCGACCAGATCGGCATGTTCTGCTACACTGGCCTGAC
ACAGGAACAGGTGAGGAAGTGA
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