mRNA_H-elongata_contig16093.3900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16093.3900.1
Unique NamemRNA_H-elongata_contig16093.3900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.570e-17
Identity = 66/196 (33.67%), Postives = 87/196 (44.39%), Query Frame = 1 
Query:   49 GYGAGGGENSGDVASKRDIT---LFSPTPPPSLGARPVARGHTSIVTRESLLEGEDDRERDLALGAETFTVTVDINAREMPLSGVLQTTRALAQHAGEDTTFFRKSTCGSSCHGIEKCSARLDSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLREEFSAVGATTTGSTEG 627
            G   GG   +G + +    T   L + TP PS G    A     ++  ++      +   D A+ A     T  + A   P      T   L +  GED    + S    +    +   A+ DS EW T  ACIVC G+Y  GD L  +PC H YHA CIDEWLD A+ P CPLCK DLR        + + ST G
Sbjct:  229 GVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAE---DAAVTASPGHATAAVTAAATP------TGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAG 415
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BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.140e-16
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  406 DSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLR 579
            DS EW T  ACIVC G+Y  GD L R+PC H YHA CIDEWLD A+ P CPLCK DLR
Sbjct:  249 DSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLR 306
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BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.660e-16
Identity = 46/102 (45.10%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:  406 DSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLRE---------EFSAVGATTTGSTE----GPTMGNAGIESV*DDS 672
            D+ EW T  ACIVC  +Y  GD L R+PC H YHA CIDEWLD A+ P CPLCK DLR            S VG   T        G + G  G+E   D++
Sbjct:  149 DTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNAARVGGGSGGGEGVEFTGDNA 250
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BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.460e-15
Identity = 39/94 (41.49%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:  409 SREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLREEFSAVGATTTGSTEGPTMGNAGIESV*DDSKTLNLP 690
            S  W  + +CI+C GEY+ GD LCR+PC HTYHA CID WLD      CPLCK  L        ++  G T      NA   S   +++ L  P
Sbjct:   69 SELWSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETADGGGTNASTTSADSNAEQLGSP 162
[Close]
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 9.990e-13
Identity = 49/137 (35.77%), Postives = 62/137 (45.26%), Query Frame = 1 
Query:  208 DRERDLALGAETFTVTVDI---NAREMPLSGVLQTTRALAQHAGEDTTFFRKSTCGSSCHGIEKCSA-RLDSR----------EWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL 576
            DRE  LA  A       +    +    P  G ++   A    AG +T             G E  S  R D++          E  T G+CIVC G+Y+ G+ LCR+ CGH YHA CIDEWLD      CPLCK D+
Sbjct:  162 DREEGLAAAAAALASDAEPATDSCTNRPAGGEIRDAAAAGPAAGSETDVVVAEASAGEKAGDEGPSCPRTDAKGGVQGEEAKGEGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298
[Close]
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.450e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  415 EWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL 576
            E  T G+CIVC G+Y+ G+ LCR+ CGH YHA CIDEWLD      CPLCK D+
Sbjct:  252 EGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305
[Close]
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-11
Identity = 36/82 (43.90%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:  409 SREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL-----------REEFSAVGATTTGST 621
            S  W +  +CI+C GEY+ GD LCR+PC HTYHA CID WLD      CPLCK  L            +E    G T   +T
Sbjct:  449 SELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGSDNDEIGGAGGTNATTT 530
[Close]
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: C1E4K7_MICCC (RING-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E4K7_MICCC)

HSP 1 Score: 67.0 bits (162), Expect = 2.460e-8
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:  436 CIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLREEFSAVGATTTGSTEGP 630
            C VCLGEY RG+ L  +PCGH +HA C+D WL +  +  CP C+  + +  S   A+ TG+   P
Sbjct:  235 CYVCLGEYERGETLRTLPCGHAFHAECVDRWL-LEMRGACPTCRAPIGDRLSKGAASGTGAAAPP 298
[Close]
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A485KSF0_9STRA (Aste57867_11189 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSF0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.130e-8
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:  400 RLDSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL 576
            + D     ++  C +CL ++S  + L ++PCGHTYH ACIDEWL   + P CPLCK+D+
Sbjct:  467 KADKTNTGSSDGCSICLVDFSENEVLRQLPCGHTYHPACIDEWL--VKSPACPLCKRDV 523
[Close]
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: V4MRY3_EUTSA (RING-type domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MRY3_EUTSA)

HSP 1 Score: 65.1 bits (157), Expect = 1.560e-7
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  424 TTG-ACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLR 579
            TTG +C +CL +YS GD L  +PCGH YHAAC+D WL  + +  CP+CK+D R
Sbjct:  226 TTGFSCAICLEDYSVGDKLRVLPCGHKYHAACVDSWLT-SWRTFCPVCKRDAR 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ1_ECTSI1.570e-1733.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI2.140e-1667.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEY0_9PHAE2.660e-1645.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUH7_9PHAE4.460e-1541.49RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI9.990e-1335.77RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE3.450e-1259.26RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LQW5_ECTSI1.250e-1143.90RING-type domain-containing protein n=1 Tax=Ectoca... [more]
C1E4K7_MICCC2.460e-843.08RING-type domain-containing protein n=1 Tax=Microm... [more]
A0A485KSF0_9STRA6.130e-845.76Aste57867_11189 protein n=1 Tax=Aphanomyces stella... [more]
V4MRY3_EUTSA1.560e-754.72RING-type domain-containing protein n=2 Tax=Eutrem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16093contigH-elongata_contig16093:2..2127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue9.5e-17
Seed eggNOG ortholog2880.D7FRQ1
KEGG koko:K03257,ko:K15694
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size1750
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16093.3900.1prot_H-elongata_contig16093.3900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16093 1089..1851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.1303215-UTR-H-elongata_contig16093:1..10881622929944.1303215-UTR-H-elongata_contig16093:1..1088Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16093 2..1088 -
1691679217.861822-UTR-H-elongata_contig16093:1..10881691679217.861822-UTR-H-elongata_contig16093:1..1088Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16093 2..1088 -
1622929944.1949294-UTR-H-elongata_contig16093:1851..21271622929944.1949294-UTR-H-elongata_contig16093:1851..2127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16093 1852..2127 -
1691679217.8856528-UTR-H-elongata_contig16093:1851..21271691679217.8856528-UTR-H-elongata_contig16093:1851..2127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16093 1852..2127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.150501-CDS-H-elongata_contig16093:1088..13601622929944.150501-CDS-H-elongata_contig16093:1088..1360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16093 1089..1360 -
1691679217.8711715-CDS-H-elongata_contig16093:1088..13601691679217.8711715-CDS-H-elongata_contig16093:1088..1360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16093 1089..1360 -
1622929944.1703844-CDS-H-elongata_contig16093:1736..18511622929944.1703844-CDS-H-elongata_contig16093:1736..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16093 1737..1851 -
1691679217.8784306-CDS-H-elongata_contig16093:1736..18511691679217.8784306-CDS-H-elongata_contig16093:1736..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16093 1737..1851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16093.3900.1

>prot_H-elongata_contig16093.3900.1 ID=prot_H-elongata_contig16093.3900.1|Name=mRNA_H-elongata_contig16093.3900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MPLSGVLQTTRALAQHAGEDTTFFRKSTCGSSCHGIEKCSARLDSREWYT
TGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL
REEFSAVGATTTGSTEGPTMGNAGIESV*
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mRNA from alignment at H-elongata_contig16093:2..2127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16093.3900.1 ID=mRNA_H-elongata_contig16093.3900.1|Name=mRNA_H-elongata_contig16093.3900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2126bp|location=Sequence derived from alignment at H-elongata_contig16093:2..2127- (Himanthalia elongata Himel1 dioecious)
GAGCAAGACTATAACGGGGATGATAAGTCGATCGAGAGAGATGAGGGAGG
ATATGGTGCTGGAGGGGGAGAGAATTCGGGGGATGTTGCGAGCAAGCGCG
ATATCACCCTGTTTTCCCCAACGCCCCCTCCCTCCCTCGGCGCACGACCT
GTCGCCCGCGGACATACTTCGATTGTGACCCGCGAGTCTTTACTCGAGGG
GGAGGACGACCGCGAACGCGATTTGGCTTTGGGAGCGGAGACCTTTACCG
TCACTGTAGACATCAACGCCCGCGAGATGCCCTTATCTGGCGTTCTGCAG
ACTACAAGAGCTTTGGCACAGCACGCTGGAGAGGACACGACTTTCTTCAG
GAAAAGCACTTGTGGATCCTCGTGCCATGGCATCGAGAAATGTAAGCTAT
ATTGCGTGATTGACCTCTTATAAATTATAGATTTTGCGGTGAAGCGGCAT
ATATATATATATATATATATATGTTACTTGCAAAGTCTTTGCAATAGAGG
TGCTACCGCCAAGCGATTTCGCTTCTTTTACTTGTTCTAGTTGTTGATCG
TTCGACGAGCGTGGTAATGATAAACGTTCTGCACTATAGACTATGATTGT
ACGCGCCCGTCCGTCAATCATCTCATGGCAAACATCCCTTCCTTCAAATC
ACATACCAGGTATACAACGCATGTACCCGTATATTTTGTTCTGGTTCCTG
GCCTGTGACTGATCAGCGCCTGATCGAGCTAACCCCCAAACAATCGGGAC
GGTCCCATGACGTACAGGCTCAGCTAGGTTGGACTCGAGGGAGTGGTACA
CCACCGGGGCCTGTATCGTGTGCTTAGGTGAATACAGCCGCGGAGACCAC
CTATGTCGAATGCCGTGTGGGCACACCTATCACGCCGCGTGCATCGACGA
GTGGTTGGACATAGCCGAGCAACCGTGCTGTCCATTGTGCAAGAAAGATC
TCCGGGAAGAGTTCTCTGCCGTTGGTGCTACTACGACTGGGTCAACGGAA
GGCCCAACAATGGGTAACGCGGGCATCGAATCTGTATGAGACGACAGCAA
AACCTTGAATTTACCACTCGTGGTGTAATGACGGTGTGTATGTTCAGGAG
GTTTGATTGATGAGTGACAATATGTTTTTTTTAAAGGAAGTATATGTAAG
CAAGGCGTGGACAATTTCGGGAAGGTAATTGGGGTCTGAATATAATTGTA
CTTCGATTTGCAGTATATGATAAATTAAACCGTTAACAGCTGTCACAACA
TAAAACGGAATGTAGGGTGGGAGAGATGATGAGAGGGTGCACAGGGAGAT
AAGCTGTCAATACAGGGGCGTTGTGAAGGATTTTTGCATGGGTAAATTAT
TTACGATATATGTTATACATTTTTAAAGGCCTTATTATTCAAGGCTCTAG
GTCGATTGTGTAGAGGTCGCCGGAGGCGGAAGCCTTTTGCTGCCAAGGAT
TGCATAATGTTATGCAAATGGGACTCACCGGACAAAGTGCAAGTTGAATT
AGTTAGATTGGCCTGTACCCTGACGTCGTCACCATTCAGATGCAACGTTC
ATCAACATGTCATGAAAAGAAAAGGTGATATTATTATCAATATAGAACAA
TGTGTGTTGTTGAAGGAGAAAGGGGCCGCTGGTTGGCCGAGATCTCAGGA
AATACGGGAGATTTTCACGGAGCGGGCATCAGATGTAATTTAGTGTGGTA
AGCGCGGGAGCTACTCTAACGCCCTCCAGACGCCATTGCTTAGCTCCGGG
AAATATTTGGTACCGTGTGAAATATTTGGTCTGTCATTTATATGACGGTC
TCGGCGAACGTGGCATTTGGTCACCTAACGTAGCAGGACCTCTGAGTTAG
TTCAGCGTCGAGGCGGAACAAGATGGCAGGATAGCGAGCGCGTCACTTCT
GATCCCCTACATCCGCTTTCGTGCCCAATGTATGTTTATATTGTGCATTC
TACAATATGTTTCGTAGAGCTATAATTATGACCACCGTGGAATGAAAAAT
TACGGGCAGATGCTGTCCAAAGGAGGGTTCGATCGACGGGGTCGTACGCG
TTTGTGACGTCGATCTGGGTCCATAAACCATACAACGGAATCCGTTTCAT
CCGCGCCAAAACCTGCAGTCGACGAA
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Coding sequence (CDS) from alignment at H-elongata_contig16093:2..2127-

>mRNA_H-elongata_contig16093.3900.1 ID=mRNA_H-elongata_contig16093.3900.1|Name=mRNA_H-elongata_contig16093.3900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig16093:2..2127- (Himanthalia elongata Himel1 dioecious)
ATGCCCTTATCTGGCGTTCTGCAGACTACAAGAGCTTTGGCACAGCACGC
TGGAGAGGACACGACTTTCTTCAGGAAAAGCACTTGTGGATCCTCGTGCC
ATGGCATCGAGAAATATGCCCTTATCTGGCGTTCTGCAGACTACAAGAGC
TTTGGCACAGCACGCTGGAGAGGACACGACTTTCTTCAGGAAAAGCACTT
GTGGATCCTCGTGCCATGGCATCGAGAAATGCTCAGCTAGGTTGGACTCG
AGGGAGTGGTACACCACCGGGGCCTGTATCGTGTGCTTAGGTGAATACAG
CCGCGGAGACCACCTATGTCGAATGCCGTGTGGGCACACCTATCACGCCG
CGTGCATCGACGAGTGGTTGGACATAGCCGAGCAACCGTGCTGTCCATTG
TGCAAGAAAGATCTCCGGGAAGAGTTCTCTGCCGTTGGTGCTACTACGAC
TGGGTCAACGGAAGGCCCAACAATGGGTAACGCGGGCATCGAATCTGTAT
GAGCTCAGCTAGGTTGGACTCGAGGGAGTGGTACACCACCGGGGCCTGTA
TCGTGTGCTTAGGTGAATACAGCCGCGGAGACCACCTATGTCGAATGCCG
TGTGGGCACACCTATCACGCCGCGTGCATCGACGAGTGGTTGGACATAGC
CGAGCAACCGTGCTGTCCATTGTGCAAGAAAGATCTCCGGGAAGAGTTCT
CTGCCGTTGGTGCTACTACGACTGGGTCAACGGAAGGCCCAACAATGGGT
AACGCGGGCATCGAATCTGTATGA
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