mRNA_H-elongata_contig16069.3890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16069.3890.1
Unique NamemRNA_H-elongata_contig16069.3890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16069.3890.1 vs. uniprot
Match: D8LRL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRL0_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 6.270e-65
Identity = 101/169 (59.76%), Postives = 132/169 (78.11%), Query Frame = 1 
Query:    1 TSEAPSAKGVDVDDISGKRLLLEFSAFGFYNRTCQLELKPNGDCLFSKGMVTREKGAWRVEEEEGKEYLQFSAPLTELYTEIFEVPSSLLFWRVPLSRMGDGTIDMQGGQIISERKTLFGLKTNFIDEGSFKARAFASDEEFPNID-FDIREIDVPVRVRMDVRGGGGG 504
            T+   +++ V+VD+ISG+RL++EF AFG++ RTCQLEL  +GDC+FSKGMV +EKGAWRVEEEEG +YLQFS PLTE+Y  +F+VPS+LLFWRVPL +  DG++ +QGGQIISE+ +LFGLKT FIDEG+FKAR  A+DEEFP  D  D   + +P  +    + G GG
Sbjct:  117 TNNQLTSEAVEVDEISGRRLIVEFKAFGYFKRTCQLELLKSGDCVFSKGMVAKEKGAWRVEEEEGTDYLQFSCPLTEMYGVMFDVPSALLFWRVPLRKGADGSVVLQGGQIISEKNSLFGLKTTFIDEGTFKARVLANDEEFPVPDKIDFSSVPIPAGLAKLKKKGKGG 285
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BLAST of mRNA_H-elongata_contig16069.3890.1 vs. uniprot
Match: A0A7S1TVR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVR3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.220e-16
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  166 GAWRVEEEEGKEYLQFSAPLTELYTEIFEVPSSLLFWRVPLSRMGDGTIDMQGGQIISERKTLFGLKTNFIDEGSFKARAFASDEE 423
            G WRVE EEG +YLQ   P  E+Y E++ +    LFWR  L +  +G I    G+IISE+K+L GLKT+F+ EG+FK       +E
Sbjct:    5 GPWRVETEEGIDYLQVIMPTKEIYRELYNIKGDDLFWRAELQKDAEGNITGVDGKIISEKKSLLGLKTDFVLEGTFKMTPLTDQKE 90
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BLAST of mRNA_H-elongata_contig16069.3890.1 vs. uniprot
Match: A0A8J2STJ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STJ2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.410e-16
Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = 1 
Query:   43 ISGKRLLLEFSAFGFYNRTCQLELKPNGDCLFSKGMVTREKGAWRV---EEEEGKE----YLQFSAPLTELYTEIFEVPSSLLFWRVPLSRMGDGTIDMQGGQIISE-----RKTLFGLK--TNFIDEGSFKARAFASDEE 423
            ++  +L+L+F+ FGF +R C L L   G   FS GMV+   G WRV   + E+G+     YL+FS P+TE+Y+E++ VPS ++FWR  ++  G G + +  G  ISE     RK +  L     F  EG F ARA A  ++
Sbjct:   45 LADTQLVLKFACFGFKDRDCLLTLGSGGTATFSAGMVSDGPGEWRVVAGDPEDGENPRDAYLEFSQPVTEVYSELYNVPSGVVFWRGRVANEG-GRLAIVDGVAISESSDTSRKLVAKLTGGAGFQKEGDFTARAVAPGDD 184
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BLAST of mRNA_H-elongata_contig16069.3890.1 vs. uniprot
Match: F0YEC8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEC8_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 2.090e-16
Identity = 54/162 (33.33%), Postives = 77/162 (47.53%), Query Frame = 1 
Query:    4 SEAPSAKGVDV----DDISG----KRLLLEFSAFGFYNRTCQLELKPNGDCLFSKGMVTREKGAWRVE-------EEEGKEYLQFSAPLTELYTEIFEVPSSLLFWRVPLSRMGDGTIDMQGGQIISERKTLFGLKTN-------FIDEGSFKARAFASDEE 423
            + AP   GV +     D++     +RL+L F+ FGFY R C LEL  +G C +S GM++   G WRV        E     YL+FS P+TE+Y E++ VPS  +FWR  +   G G   + G  I         L +        F  EG+F  R    D++
Sbjct:   32 ARAPRGAGVSLRASPSDVAAALGDERLVLNFACFGFYERDCLLELDGDGTCEYSAGMISDGPGEWRVVGGDPDGGESPADAYLEFSQPMTEIYRELYNVPSGTVFWRGRVVPSGGGYAVVDGVAISEAESQTSKLLSKVVLRGGGFQKEGTFTGRLVLPDDD 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16069.3890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRL0_ECTSI6.270e-6559.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1TVR3_9STRA1.220e-1645.35Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J2STJ2_9STRA1.410e-1638.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YEC8_AURAN2.090e-1633.33Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16069contigH-elongata_contig16069:6432..7666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue1.8e-52
Seed eggNOG ortholog2880.D8LRL0
EggNOG OGs2EX1J@1,2SYSJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000200.1
Exons3
Model size504
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16069.3890.1prot_H-elongata_contig16069.3890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16069 6432..7666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.095261-CDS-H-elongata_contig16069:6431..66141622929943.095261-CDS-H-elongata_contig16069:6431..6614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 6432..6614 +
1691679217.3179555-CDS-H-elongata_contig16069:6431..66141691679217.3179555-CDS-H-elongata_contig16069:6431..6614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 6432..6614 +
1622929943.1269236-CDS-H-elongata_contig16069:7156..73261622929943.1269236-CDS-H-elongata_contig16069:7156..7326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 7157..7326 +
1691679217.3276114-CDS-H-elongata_contig16069:7156..73261691679217.3276114-CDS-H-elongata_contig16069:7156..7326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 7157..7326 +
1622929943.1434681-CDS-H-elongata_contig16069:7515..76661622929943.1434681-CDS-H-elongata_contig16069:7515..7666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 7516..7666 +
1691679217.3425376-CDS-H-elongata_contig16069:7515..76661691679217.3425376-CDS-H-elongata_contig16069:7515..7666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 7516..7666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16069.3890.1

>prot_H-elongata_contig16069.3890.1 ID=prot_H-elongata_contig16069.3890.1|Name=mRNA_H-elongata_contig16069.3890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
TSEAPSAKGVDVDDISGKRLLLEFSAFGFYNRTCQLELKPNGDCLFSKGM
VTREKGAWRVEEEEGKEYLQFSAPLTELYTEIFEVPSSLLFWRVPLSRMG
DGTIDMQGGQIISERKTLFGLKTNFIDEGSFKARAFASDEEFPNIDFDIR
EIDVPVRVRMDVRGGGGG
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mRNA from alignment at H-elongata_contig16069:6432..7666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16069.3890.1 ID=mRNA_H-elongata_contig16069.3890.1|Name=mRNA_H-elongata_contig16069.3890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-elongata_contig16069:6432..7666+ (Himanthalia elongata Himel1 dioecious)
ACCTCTGAGGCGCCTTCAGCCAAGGGCGTAGACGTTGATGACATCAGCGG
CAAGCGATTACTCCTTGAGTTTTCTGCTTTCGGTTTCTACAATCGAACTT
GCCAGTTGGAGCTCAAGCCGAATGGAGACTGTCTCTTTAGCAAAGGAATG
GTTACTAGAGAGAAGGGCGCATGGCGGGTGGAGGTGATCAACAGATCGTA
CTGTTTGTACTCTGACGAGAGTAACGATCTCCGAAACTTCGATGCCGACC
CCGACCTAGGATATTTTGTGGATGTCTTCTCGTTCGGCGATCGGTTGTTG
GAGCGAGTTTTTCGGGCATTTTTTTTGTTATGACTCAAATTGAAGGCATC
ATTAAAAAAACGCAGTGCTTCGTCCTTTGTTCCTAATATATCTGTACCAC
ACTCCCCGCAGCAGCAGTGTACGAAAAAATTAGGAAATATTTTAATTTTA
CGCTGTCACTGACTCTCTTGAGAGCAAGCGTTGATTAATCGTTGGACTGG
CTGTTGGATCCCCTAAGCGGTCAAGCCAACCTTCAGGTTTGATCGAAGCA
TTCACACTCAGGTCATGAGCGGTAGAGGACCCCCTAACTGCCGCTCCCTC
GCTCTGGCTGGCGAGCTGCAGACATGTTTTGTTCTTACTCAATCCTTTTG
AAGCTACCATGCCAGGACGAGTCTCACAACTTCGCGCGTTTGCTCGCCGC
CCCCGGCCGTGCCTCGCGACTACAGGAGGAAGAGGGCAAGGAGTACCTTC
AGTTCAGCGCGCCGTTGACCGAGCTTTACACCGAAATTTTTGAGGTACCC
AGCTCGCTGCTGTTCTGGCGCGTGCCGCTGTCCAGGATGGGGGACGGCAC
CATCGATATGCAGGGGGGACAGATCATCAGCGAGCGGAAAACGCTGTGGG
TGTGCGAGGTTTTAGTTCCGCCTCTTCTTGTCATTGACCCGTTCTTGTTA
TGTTTCAGCCCGCGCAGTTTCATCGACATGTCGTCAAAACGTCTTGACGG
CGCAGGACACCGTTACGAAATCAGCCTCCCTCGGCGCCGTTGCGCGTATC
TTTGCGCCGCCGCTGACCCCCTGCACCTTTGCAGGTTCGGGTTGAAAACG
AACTTCATCGACGAGGGTAGTTTCAAGGCGCGAGCTTTCGCCAGCGATGA
GGAGTTCCCTAACATCGATTTCGACATCAGAGAGATCGACGTCCCGGTGA
GAGTGCGGATGGATGTGCGTGGGGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig16069:6432..7666+

>mRNA_H-elongata_contig16069.3890.1 ID=mRNA_H-elongata_contig16069.3890.1|Name=mRNA_H-elongata_contig16069.3890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig16069:6432..7666+ (Himanthalia elongata Himel1 dioecious)
ACCTCTGAGGCGCCTTCAGCCAAGGGCGTAGACGTTGATGACATCAGCGG
CAAGCGATTACTCCTTGAGTTTTCTGCTTTCGGTTTCTACAATCGAACTT
GCCAGTTGGAGCTCAAGCCGAATGGAGACTGTCTCTTTAGCAAAGGAATG
GTTACTAGAGAGAAGGGCGCATGGCGGGTGGAGACCTCTGAGGCGCCTTC
AGCCAAGGGCGTAGACGTTGATGACATCAGCGGCAAGCGATTACTCCTTG
AGTTTTCTGCTTTCGGTTTCTACAATCGAACTTGCCAGTTGGAGCTCAAG
CCGAATGGAGACTGTCTCTTTAGCAAAGGAATGGTTACTAGAGAGAAGGG
CGCATGGCGGGTGGAGGAGGAAGAGGGCAAGGAGTACCTTCAGTTCAGCG
CGCCGTTGACCGAGCTTTACACCGAAATTTTTGAGGTACCCAGCTCGCTG
CTGTTCTGGCGCGTGCCGCTGTCCAGGATGGGGGACGGCACCATCGATAT
GCAGGGGGGACAGATCATCAGCGAGCGGAAAACGCTGAGGAAGAGGGCAA
GGAGTACCTTCAGTTCAGCGCGCCGTTGACCGAGCTTTACACCGAAATTT
TTGAGGTACCCAGCTCGCTGCTGTTCTGGCGCGTGCCGCTGTCCAGGATG
GGGGACGGCACCATCGATATGCAGGGGGGACAGATCATCAGCGAGCGGAA
AACGCTGTTCGGGTTGAAAACGAACTTCATCGACGAGGGTAGTTTCAAGG
CGCGAGCTTTCGCCAGCGATGAGGAGTTCCCTAACATCGATTTCGACATC
AGAGAGATCGACGTCCCGGTGAGAGTGCGGATGGATGTGCGTGGGGGGGG
GGGGGGGGTTCGGGTTGAAAACGAACTTCATCGACGAGGGTAGTTTCAAG
GCGCGAGCTTTCGCCAGCGATGAGGAGTTCCCTAACATCGATTTCGACAT
CAGAGAGATCGACGTCCCGGTGAGAGTGCGGATGGATGTGCGTGGGGGGG
GGGGGGGG
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