mRNA_H-elongata_contig16069.3889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16069.3889.1
Unique NamemRNA_H-elongata_contig16069.3889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: B7ZGN7_9PHAE (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN7_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 3.770e-120
Identity = 175/209 (83.73%), Postives = 191/209 (91.39%), Query Frame = 1
Query:   10 SSVSRQATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQDD 636
            SSV+RQA A D  D R KEMP+ R+RP KY GACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLP VY+ RFV+EG+MKTKYPIMIAG NFGCGSSREHAPIA+GAAG RVVVAESYARIFFRNSIATGELYPYEC+ERLVD+  TGDE++VDLSTDTLTNHA+GKEY L+PLGDA PVINAGGLFP+AIQTGMIKK ++
Sbjct:   41 SSVARQAAASDDMDPREKEMPKFRERPTKYTGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPSVYKTRFVEEGSMKTKYPIMIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDIIKTGDELTVDLSTDTLTNHASGKEYPLTPLGDAAPVINAGGLFPFAIQTGMIKKLEE 249          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A6H5JPR9_9PHAE (Aconitase_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPR9_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 3.760e-117
Identity = 167/204 (81.86%), Postives = 185/204 (90.69%), Query Frame = 1
Query:   25 QATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQDD 636
            +A A  + D RVKEMP+NRDRPDKY G CFVVKDNIDTDQIIPAEYLTLVPS A+EYEKLGSYAMIGLP VY  R+V+EG+M T+YPI+IAG NFGCGSSREHAPIA+GAAG RVVVAESYARIFFRNSIATGELYPYEC+ERLVD F+TGD+V+VDL+TDTL NH TGKEY L+PLGDAGPVINAGGLFPYAI+TGMIKK D+
Sbjct:   53 EADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNANEYEKLGSYAMIGLPDVYTTRYVEEGSMATRYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDAFTTGDDVTVDLTTDTLINHTTGKEYPLNPLGDAGPVINAGGLFPYAIKTGMIKKMDE 256          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: D8SLS4_SELML (Aconitase_C domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SLS4_SELML)

HSP 1 Score: 258 bits (658), Expect = 1.060e-84
Identity = 125/176 (71.02%), Postives = 149/176 (84.66%), Query Frame = 1
Query:   94 KYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMI 621
            + +G CFVV+DNIDTDQIIPAEYLTLVPSK DEYEKLGSYAM GLP  Y + F++ G  KTKY I+IAG+NFGCGSSREHAP+A+GA+G++VVVAESYARIFFRNS+ATGE+YP EC+ R+ D F  GD+V+VD+  D + NH+TGKEY+L PLGDA PVI AGG+F YA QTGMI
Sbjct:    9 QISGKCFVVRDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMAGLPPHYGQ-FMEPGKSKTKYSIIIAGSNFGCGSSREHAPVALGASGIQVVVAESYARIFFRNSVATGEMYPVECEARICDEFHNGDDVTVDMERDVVVNHSTGKEYALKPLGDAAPVIEAGGIFAYARQTGMI 183          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A7N0U1F4_KALFE (Aconitase_C domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U1F4_KALFE)

HSP 1 Score: 259 bits (663), Expect = 2.240e-84
Identity = 125/178 (70.22%), Postives = 149/178 (83.71%), Query Frame = 1
Query:   97 YAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQ 630
            + G C+VVKDNIDTDQIIPAEYLTLVPSK DEY+KLGSYAMIGLP  Y  RF++ G  +TKY I+IAG NFGCGSSREHAP+A+GAAGV+ VVAESYARIFFRNS+ATGE+YP EC+ R+ D  STGD V+++L  + L NH+TGKE++L P+GDAGPVI AGG+F YA +TGMI  Q
Sbjct:   82 FHGVCYVVKDNIDTDQIIPAEYLTLVPSKPDEYKKLGSYAMIGLPESYRTRFIEPGESETKYSIVIAGDNFGCGSSREHAPVALGAAGVKAVVAESYARIFFRNSVATGEIYPLECEGRICDECSTGDVVTIELKENKLINHSTGKEFALKPIGDAGPVIEAGGIFAYARKTGMIPAQ 259          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A7J7Q700_9CHLO (Small subunit of isopropylmalate dehydratase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q700_9CHLO)

HSP 1 Score: 256 bits (653), Expect = 1.510e-83
Identity = 133/207 (64.25%), Postives = 160/207 (77.29%), Query Frame = 1
Query:    4 QASSVSRQATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIK 624
            Q +++S ++ AV L +A+  + P   D P    G CFV KDNIDTDQIIPAEYLTLVPSK DEYEKLGSYA+IGLP  Y  +FV+EG MKTKY ++I G NFGCGSSREHAP+A+GAAG +VVVAESYARIFFRN ++TGELYP E   R+ +  +TG++V+VD+  + L NH TGKEY L  LGDAGPVI+AGGLF YA Q GMIK
Sbjct:    9 QRAALSSRSRAV-LVEAKTTKAP---DAPRIVRGTCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDEYTTKFVEEGEMKTKYKVIIGGQNFGCGSSREHAPVALGAAGSQVVVAESYARIFFRNCMSTGELYPVETDVRVCEELNTGEDVTVDMEANVLINHTTGKEYQLKALGDAGPVIDAGGLFDYARQQGMIK 211          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: UPI002009A417 (3-isopropylmalate dehydratase small subunit 1-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009A417)

HSP 1 Score: 254 bits (648), Expect = 3.510e-83
Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 1
Query:   97 YAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQD 633
            + G C+VV DNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLP  YE RFV+ GA KTKY I+I G NFGCGSSREHAP+A+GAAGV  VVAESYARIFFRNS+ATGE+YP E + RL +  +TGD V+++L    L NH TGKEY L P+GDAGPVI AGG+F YA + GMI  +D
Sbjct:    8 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSTYESRFVEPGATKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLESEGRLCEECTTGDVVTIELGESKLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKAGMIPSRD 186          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A4D9BDJ2_SALSN (3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BDJ2_SALSN)

HSP 1 Score: 255 bits (651), Expect = 1.140e-82
Identity = 125/179 (69.83%), Postives = 143/179 (79.89%), Query Frame = 1
Query:   97 YAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQD 633
            + G C+VV DNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLP  YE RFV+ GA KTKY I+I G NFGCGSSREHAP+A+GAAGV  VVAESYARIFFRNS+ATGE+YP E + RL D  +TGD V+++L    L NH TGKEY L P+GDAGPVI AGG+F YA + GMI  +D
Sbjct:   75 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSTYEARFVEPGATKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLESEGRLCDECTTGDVVTIELGESKLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKAGMIPSRD 253          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A1Y1I3V1_KLENI (3-isopropylmalate dehydratase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3V1_KLENI)

HSP 1 Score: 254 bits (648), Expect = 1.930e-82
Identity = 127/174 (72.99%), Postives = 145/174 (83.33%), Query Frame = 1
Query:  103 GACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIK 624
            G  FVV DNIDTDQIIPAEYLTLVPSK +EYEKLGSYAM GLP  Y   F++EG MKTKYPIMI G N+GCGSSREHAP+A+GAAG++ VVAESYARIFFRNS+ATGELYP E   RL +   TGDEV+VD+  D LT+H TGK+Y+L P+G+AGPVI+AGGLF YA QTGMIK
Sbjct:   63 GPVFVVDDNIDTDQIIPAEYLTLVPSKPEEYEKLGSYAMAGLPKGYGI-FIEEGEMKTKYPIMIGGKNYGCGSSREHAPVALGAAGLKAVVAESYARIFFRNSVATGELYPVEIDTRLCEELKTGDEVTVDMENDVLTHHGTGKQYNLKPIGEAGPVIDAGGLFNYARQTGMIK 235          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A836BR91_9CHLO (Aconitase_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BR91_9CHLO)

HSP 1 Score: 252 bits (643), Expect = 4.990e-82
Identity = 130/203 (64.04%), Postives = 155/203 (76.35%), Query Frame = 1
Query:   22 RQATAVDLSDARV-KEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGV-YEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIK 624
            RQA     S  RV  ++ +  + P    G CFV KDNIDTDQIIPAEYLTLVPSK DEYEKLGSYA+IGLP V Y  R+V++G+MKT+YP++I G NFGCGSSREHAP+A+GAAG +V VAESYARIFFRN IATGELYP E   RL D+  TG EV+VD+  + LT+H+TGK Y L  +GDAGPVI+AGG+F +A   GMIK
Sbjct:   10 RQARPARRSTVRVCAKVDKKPNEPRIIRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDVEYPTRYVNDGSMKTEYPVIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETDVRLCDVLKTGSEVTVDMEANVLTDHSTGKTYKLQDIGDAGPVIDAGGIFEFARAAGMIK 212          
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A371HP06_MUCPR (3-isopropylmalate dehydratase small subunit 3 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HP06_MUCPR)

HSP 1 Score: 253 bits (647), Expect = 8.030e-82
Identity = 124/189 (65.61%), Postives = 146/189 (77.25%), Query Frame = 1
Query:   55 RVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMI 621
            R+  +  +      + G C+VV DNIDTDQIIPAEYLTLVPSK DEYEKLGSYA+IGLP  Y  RF+D G  KTKYPI+IAGANFGCGSSREHAP+A+GA+G   VVAESYARIFFRNS+ATGE+YP E + RL +   TGD V+++L    L NH +GKEY L P+GDAGPVI AGG+F YA +TGMI
Sbjct:   58 RIPRVQASASSSSSFHGLCYVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPASYATRFIDPGETKTKYPIVIAGANFGCGSSREHAPVALGASGAAAVVAESYARIFFRNSVATGEVYPLESESRLCEECRTGDLVTIELGESKLINHTSGKEYRLKPIGDAGPVIEAGGIFAYARKTGMI 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGN7_9PHAE3.770e-12083.733-isopropylmalate dehydratase (Fragment) n=1 Tax=L... [more]
A0A6H5JPR9_9PHAE3.760e-11781.86Aconitase_C domain-containing protein n=2 Tax=Ecto... [more]
D8SLS4_SELML1.060e-8471.02Aconitase_C domain-containing protein n=3 Tax=Sela... [more]
A0A7N0U1F4_KALFE2.240e-8470.22Aconitase_C domain-containing protein n=2 Tax=Kala... [more]
A0A7J7Q700_9CHLO1.510e-8364.25Small subunit of isopropylmalate dehydratase n=1 T... [more]
UPI002009A4173.510e-8369.273-isopropylmalate dehydratase small subunit 1-like... [more]
A0A4D9BDJ2_SALSN1.140e-8269.833-isopropylmalate/(R)-2-methylmalate dehydratase s... [more]
A0A1Y1I3V1_KLENI1.930e-8272.993-isopropylmalate dehydratase n=1 Tax=Klebsormidiu... [more]
A0A836BR91_9CHLO4.990e-8264.04Aconitase_C domain-containing protein n=1 Tax=Edap... [more]
A0A371HP06_MUCPR8.030e-8265.613-isopropylmalate dehydratase small subunit 3 (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16069contigH-elongata_contig16069:2791..5394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.4
Seed ortholog evalue3.8e-95
Seed eggNOG ortholog2880.D8LRK8
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K01704,ko:K21359
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
GOsGO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006551,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009657,GO:0009658,GO:0009987,GO:0016043,GO:0016053,GO:0016143,GO:0016144,GO:0016829,GO:0016835,GO:0016836,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0048229,GO:0048856,GO:0050896,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659
EggNOG free text desc.3-isopropylmalate dehydratase activity
EggNOG OGsCOG0065@1,KOG0454@2759
EC4.2.1.170,4.2.1.33,4.2.1.35
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description3-isopropylmalate dehydratase
Ec32 orthologEc-12_000170.1
Exons6
Model size639
Cds size639
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16069.3889.1prot_H-elongata_contig16069.3889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16069 2791..5394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.9669569-CDS-H-elongata_contig16069:2790..29001622929942.9669569-CDS-H-elongata_contig16069:2790..2900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 2791..2900 -
1691679217.267845-CDS-H-elongata_contig16069:2790..29001691679217.267845-CDS-H-elongata_contig16069:2790..2900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 2791..2900 -
1622929942.9838753-CDS-H-elongata_contig16069:3423..35261622929942.9838753-CDS-H-elongata_contig16069:3423..3526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 3424..3526 -
1691679217.2800276-CDS-H-elongata_contig16069:3423..35261691679217.2800276-CDS-H-elongata_contig16069:3423..3526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 3424..3526 -
1622929943.002332-CDS-H-elongata_contig16069:3927..40231622929943.002332-CDS-H-elongata_contig16069:3927..4023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 3928..4023 -
1691679217.2873788-CDS-H-elongata_contig16069:3927..40231691679217.2873788-CDS-H-elongata_contig16069:3927..4023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 3928..4023 -
1622929943.0169263-CDS-H-elongata_contig16069:4313..43901622929943.0169263-CDS-H-elongata_contig16069:4313..4390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 4314..4390 -
1691679217.2952697-CDS-H-elongata_contig16069:4313..43901691679217.2952697-CDS-H-elongata_contig16069:4313..4390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 4314..4390 -
1622929943.029942-CDS-H-elongata_contig16069:4751..48211622929943.029942-CDS-H-elongata_contig16069:4751..4821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 4752..4821 -
1691679217.3027873-CDS-H-elongata_contig16069:4751..48211691679217.3027873-CDS-H-elongata_contig16069:4751..4821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 4752..4821 -
1622929943.045266-CDS-H-elongata_contig16069:5211..53941622929943.045266-CDS-H-elongata_contig16069:5211..5394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 5212..5394 -
1691679217.3100622-CDS-H-elongata_contig16069:5211..53941691679217.3100622-CDS-H-elongata_contig16069:5211..5394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 5212..5394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16069.3889.1

>prot_H-elongata_contig16069.3889.1 ID=prot_H-elongata_contig16069.3889.1|Name=mRNA_H-elongata_contig16069.3889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
GQASSVSRQATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQII
PAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAG
ANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKE
RLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPY
AIQTGMIKKQDD*
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mRNA from alignment at H-elongata_contig16069:2791..5394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16069.3889.1 ID=mRNA_H-elongata_contig16069.3889.1|Name=mRNA_H-elongata_contig16069.3889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2604bp|location=Sequence derived from alignment at H-elongata_contig16069:2791..5394- (Himanthalia elongata Himel1 dioecious)
GGACAGGCCAGCAGTGTTTCGCGACAAGCGACCGCAGTGGATTTGAGCGA TGCCCGAGTGAAAGAAATGCCGCAGAACAGAGACAGGCCTGACAAGTACG CGGGGGCTTGCTTCGTCGTGAAGGATAACATCGACACGGACCAAATCATT CCGGCAGAGTATCTCACCCTCGTGCCATCTAAGGTGTGCCCCTGACCGCT TCAGCTTCTTCCCAGTCGGCGATGGGACTCGAGGAGAATAATATATTAAT AGTGCTGTGTCGCGGCTCTCCCGGTATCGGCATTAAAAGCGTCGTCTCCG CAGAGCCCGCTGAACTTGGGGATGCCAACCTGATTACCGTAAACGTTCTG TGTGCGCAAAATGTGTTGTTCGTTTCTTCAAATCCGGAAAAAGCTCCACA TGGCGCGCGCCGTAACCGTCGGAGACATTTTTTTTGCTCTGGTGTTCTCA TCTCACAGTTTCTTTCTGGTGCCTTTTCCCTGGATACGGGGAGAGTATAA TAGTAACGCTCTCATCCACGTTCCGCTTTACTTCCCTTCACCACCCGTTT CCCTTACCATTTCTTCTCAAAAGGCCGATGAATACGAGAAGCTGGGTTCG TACGCCATGATTGGACTGCCAGGCGTGTACGAGAAGCGCTTCGGTGAGAC ACCAAGGCCTGGGGTTGATCGAGATGGTTAGAGGGTGCGGTTGTCTCTTC CACAGTACATGTAGATGGAGAGCTAACGAGGGCGCCCCCATATCAAAATA CATATATTTGAGAAGAATGAGGTAGAAGAGCGCATGTAACAAGCGTTCAC TCGAGGGTCGCGTTCTGGTTCCACCAATACGAGGTAGTTCGTGTGAGCTC CATTTATGCACCCTCCAAGGCGTATGCGATTCGCCAAGTGCGGGGGTGAC TTAGCATCCTAACTAATCAGCAGAGTCCTTGAAGAAACATTTGTTGTTTT TTCGTACCCGTCGATGACGATAGAACCCACATAAACATTTGCGGCGCTTT ACAGTGGACGAGGGAGCGATGAAGACCAAATATCCCATCATGATTGCTGG GGCTAACTTCGGCTGCGGCTCCTCGCGAGAGGTAGTCAACCGGTCTGTCT CTCGCGTTTCTCATTGGTATAGTGTACCGTGGGCGAGGGAGTTTTTGTTT GTTTGTTTTTTTAAGTGGGAGTAATTAGATAACGCACCACGCTCGATTTT GTAGCCAATTACTACTGCGGTACAAGTTTCCGCTTCACGAAGCGAAGCCT GTTTCCTAGAGATCTTCATTCTTGGCCCAATCGTGCTTCGTTCTCCAACA AGTCGCATTTTCTCCTCGTATCTTACCGTCCTCGGGGTTGATTCGCTTCC TCAACCGGACATCGTCCGCAGCATGCGCCGATCGCCATGGGGGCGGCGGG CGTTCGAGTTGTTGTCGCAGAGTCATATGCCCGAATATTCTTCCGGAATT CCATCGCAACAGGGGAGGTGAGAGACGGGCGGTTTCCCTAACTACGCATT CCGAACTCAGATTTCGTGTGGCGGTCAAAATCGATCGCGGAAAGCTCACC TTCTCTCTTTGATTTCCAACAACGGTCGGCGTTGTCGCTGATTCATGTGG CAAGTTTTGAACGTTGAACGAGTCCAACTTTCATAGGCAATGCAATGTGG CCGGGCACTGTAGTATTTCGAGATTGCTCTCGACACGAACCTTGTGTGCA ATCCTGACATGATCAACCCCACTTGCGAAAGCCACTCCTGTCGCACACAC AAGGCGAGACTGCTGCTCTCGACGCCCGTTGCTAGAATAGTCGGCGAAGT GAATTTGGACGACACCTTCAATCTAACGAGTCGGCTCCGTTTTTTTCTCT TTTTTTTTTCACCCCCAGCTATATCCTTACGAGTGTAAGGAAAGGCTTGT GGACCTCTTTAGCACGGGAGATGAGGTCTCCGTCGACCTCTCCACGGACA CCTTGACGAACCATGCCACCGGTGAGAGCCTGAAACCCGTATGATCATGT TGGTTACGACCCGCATGTACTGCCTTGCACTGCCTTAAAAATCGAGCTGC GGGGGAGGGGTAACGTGTGAGTGGATCTATCTTTTTCAATGTATATTCCG TGAAGCTATTTTAAAGCGTTTTATCTGCCGAGGTAACGATATCGCCCGCA CCAGGACCGTAGCCGCATCAAAAGCTTCACCTGTGTCCAAAATGATGCAC GCCGAGGCGCAGTTTATGACGATGTGTGGTACTCTCTCGTGCTAGAAAGC GGATGAACTTTAATTATCATGGAAAGATAACCCGGCACTCTCCTGGACAG TCCACGACAACAAACCACGACCATGCAACATCCGAGCTTATTACTCGTCT ATACCTTGTGCGACGCCCCACGGTATCGTGCGGACGAAGATAATCCTCAA GTGTGTTCTTTCAAGCATAAAGAAACGTAATTTTTGTCTTATCCCTTCCG GTAACGAAATCGCTGTATCCCCACCGCCGCAATTCTACCTCCAGGCAAGG AATACTCGCTCAGCCCCCTTGGAGATGCCGGACCGGTTATCAACGCGGGG GGCTTGTTTCCCTACGCCATCCAGACTGGCATGATAAAAAAGCAAGATGA CTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16069:2791..5394-

>mRNA_H-elongata_contig16069.3889.1 ID=mRNA_H-elongata_contig16069.3889.1|Name=mRNA_H-elongata_contig16069.3889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig16069:2791..5394- (Himanthalia elongata Himel1 dioecious)
GGACAGGCCAGCAGTGTTTCGCGACAAGCGACCGCAGTGGATTTGAGCGA
TGCCCGAGTGAAAGAAATGCCGCAGAACAGAGACAGGCCTGACAAGTACG
CGGGGGCTTGCTTCGTCGTGAAGGATAACATCGACACGGACCAAATCATT
CCGGCAGAGTATCTCACCCTCGTGCCATCTAAGGGACAGGCCAGCAGTGT
TTCGCGACAAGCGACCGCAGTGGATTTGAGCGATGCCCGAGTGAAAGAAA
TGCCGCAGAACAGAGACAGGCCTGACAAGTACGCGGGGGCTTGCTTCGTC
GTGAAGGATAACATCGACACGGACCAAATCATTCCGGCAGAGTATCTCAC
CCTCGTGCCATCTAAGGCCGATGAATACGAGAAGCTGGGTTCGTACGCCA
TGATTGGACTGCCAGGCGTGTACGAGAAGCGCTTCGGCCGATGAATACGA
GAAGCTGGGTTCGTACGCCATGATTGGACTGCCAGGCGTGTACGAGAAGC
GCTTCGTGGACGAGGGAGCGATGAAGACCAAATATCCCATCATGATTGCT
GGGGCTAACTTCGGCTGCGGCTCCTCGCGAGAGTGGACGAGGGAGCGATG
AAGACCAAATATCCCATCATGATTGCTGGGGCTAACTTCGGCTGCGGCTC
CTCGCGAGAGCATGCGCCGATCGCCATGGGGGCGGCGGGCGTTCGAGTTG
TTGTCGCAGAGTCATATGCCCGAATATTCTTCCGGAATTCCATCGCAACA
GGGGAGCATGCGCCGATCGCCATGGGGGCGGCGGGCGTTCGAGTTGTTGT
CGCAGAGTCATATGCCCGAATATTCTTCCGGAATTCCATCGCAACAGGGG
AGCTATATCCTTACGAGTGTAAGGAAAGGCTTGTGGACCTCTTTAGCACG
GGAGATGAGGTCTCCGTCGACCTCTCCACGGACACCTTGACGAACCATGC
CACCGCTATATCCTTACGAGTGTAAGGAAAGGCTTGTGGACCTCTTTAGC
ACGGGAGATGAGGTCTCCGTCGACCTCTCCACGGACACCTTGACGAACCA
TGCCACCGGCAAGGAATACTCGCTCAGCCCCCTTGGAGATGCCGGACCGG
TTATCAACGCGGGGGGCTTGTTTCCCTACGCCATCCAGACTGGCATGATA
AAAAAGCAAGATGACTAAGCAAGGAATACTCGCTCAGCCCCCTTGGAGAT
GCCGGACCGGTTATCAACGCGGGGGGCTTGTTTCCCTACGCCATCCAGAC
TGGCATGATAAAAAAGCAAGATGACTAA
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