mRNA_H-elongata_contig160686.3887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160686.3887.1
Unique NamemRNA_H-elongata_contig160686.3887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A6H5JW39_9PHAE (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW39_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.510e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 2 
Query:  245 IPLYHYDTAGKKVPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAHC 475
            +PL   D   +KVPAY+PDP ELATLIYTSGTTG+PKGVMLSH NIISNIVG+R +LP DLVSCHDRSLSFLPWAHC
Sbjct:  279 VPLALRDLEEEKVPAYIPDPSELATLIYTSGTTGKPKGVMLSHGNIISNIVGIRAILPEDLVSCHDRSLSFLPWAHC 355
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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A835ZGH2_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.320e-22
Identity = 47/64 (73.44%), Postives = 58/64 (90.62%), Query Frame = 2 
Query:  281 VPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 472
            VPA +P+PR+LATLIYTSGTTG PKGV L+H N++SN++GLRTVLP  +++CHDRSLSFLPWAH
Sbjct:  160 VPAIIPNPRDLATLIYTSGTTGTPKGVRLTHANLMSNVLGLRTVLPEGVLTCHDRSLSFLPWAH 223
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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7S2PRW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRW1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.570e-14
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 2 
Query:  293 LPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVL--PTDLVSCHDRSLSFLPWAH-----CERAAKL*HFLVLCVYVLHCERAPKSYQGI*RFEF*YWY**CRSTVRKIDSLMIYSP 643
            +P   +LA L+YTSGTTG PKGV L+HDN +SN++G+RT++  PTD +   DRSL+FLPWAH     CE               L C  A  +  GI           CR     +D L +  P
Sbjct:  227 MPTADDLANLVYTSGTTGVPKGVELTHDNSVSNVMGVRTMVTNPTDFIRQSDRSLAFLPWAHSYGQTCE---------------LWCALAHGASMGI-----------CRGVPSILDDLQLVKP 324
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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A850BBL5_9DELT (Long-chain fatty acid--CoA ligase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BBL5_9DELT)

HSP 1 Score: 84.0 bits (206), Expect = 4.110e-14
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:  269 AGKK--VPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 472
            AG+K   PA  P+P++ ATLIYTSGTTG PKGV+LSH NI SNI  +  +LP +     DRSLSFLPWAH
Sbjct:  155 AGEKNPTPAIKPEPKDTATLIYTSGTTGNPKGVILSHGNIASNISAVHEILPLE---GEDRSLSFLPWAH 221
[Close]
BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7S2PSF4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PSF4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.440e-14
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 2 
Query:  293 LPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVL--PTDLVSCHDRSLSFLPWAH-----CERAAKL*HFLVLCVYVLHCERAPKSYQGI*RFEF*YWY**CRSTVRKIDSLMIYSP 643
            +P   +LA L+YTSGTTG PKGV L+HDN +SN++G+RT++  PTD +   DRSL+FLPWAH     CE               L C  A  +  GI           CR     +D L +  P
Sbjct:  227 MPTADDLANLVYTSGTTGVPKGVELTHDNSVSNVMGVRTMVTNPTDFIRQSDRSLAFLPWAHSYGQTCE---------------LWCALAHGASMGI-----------CRGVPSILDDLQLVKP 324
[Close]
BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A849Z1T6_9DELT (Long-chain fatty acid--CoA ligase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A849Z1T6_9DELT)

HSP 1 Score: 81.6 bits (200), Expect = 2.380e-13
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 2 
Query:  272 GKKVPAYL--PDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 472
            GKK PA    P+P++ A LIYTSGTTG PKGV+LSH NI+SN+  ++ +LP   +   DRSLSFLPWAH
Sbjct:  155 GKKEPAEALDPEPKDTACLIYTSGTTGDPKGVILSHGNIVSNVNAVQHMLP---IGADDRSLSFLPWAH 220
[Close]
BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7Y5DXK5_9DELT (Long-chain fatty acid--CoA ligase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5DXK5_9DELT)

HSP 1 Score: 81.6 bits (200), Expect = 2.380e-13
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 2 
Query:  272 GKKVPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAHC-ERAAKL*HFLVLCVYVLHCERAPKSYQGI 562
            GKK     PD  +LA +IYTSGTTG PKGVMLSH NI SN+  +  V P   +S  DRSLSFLPWAH   +  +L     +   +  CE   K    +
Sbjct:  157 GKKAATIRPDRDDLACIIYTSGTTGNPKGVMLSHYNIASNVSAVHDVFP---MSSEDRSLSFLPWAHVFGQTCELHALFSMGASMAMCEAVDKILDNL 251
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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7S2XXE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXE0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-13
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 2 
Query:  284 PAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAHCE-RAAKL*HFLVLCVYVLHCERAPKSYQGI 562
            P++  +  ++ATLIYTSGTTG PKGV+L+H N+I NI  L   LP + ++ + RSLSFLPWAHC  +  +L +FL     +   E   K    +
Sbjct:  173 PSHSAEESDVATLIYTSGTTGNPKGVVLTHSNLIHNIWALENTLPKNTLNKNHRSLSFLPWAHCYGQTCELHNFLAHGGQIAVAESVEKLVDNL 266
[Close]
BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A4U1HS98_9DELT (Long-chain fatty acid--CoA ligase n=2 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1HS98_9DELT)

HSP 1 Score: 80.9 bits (198), Expect = 4.330e-13
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  269 AGKK--VPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 472
            AG K  VPA  P P + A LIYTSGTTG PKGV+LSH NI SNI  +  +LP   +   DRSLSFLPWAH
Sbjct:  155 AGAKSPVPAIKPTPADTACLIYTSGTTGNPKGVILSHGNIASNISAVHEILP---IEGEDRSLSFLPWAH 221
[Close]
BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A2E5M427_9GAMM (Long-chain fatty acid--CoA ligase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M427_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 5.750e-13
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  263 DTAGKKVPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 472
             +AG  V    P P ELA  IYTSGTTG PKGV LSH NI+SNI  ++ +LP   +S  DRSLSFLPWAH
Sbjct:  161 SSAGTPVAPEFPAPEELAGFIYTSGTTGDPKGVKLSHGNIVSNINAVQPLLP---LSGDDRSLSFLPWAH 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW39_9PHAE3.510e-3079.22AMP-binding domain-containing protein n=2 Tax=Ecto... [more]
A0A835ZGH2_9STRA5.320e-2273.44Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A7S2PRW1_9STRA1.570e-1439.52Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A850BBL5_9DELT4.110e-1461.43Long-chain fatty acid--CoA ligase n=1 Tax=Polyangi... [more]
A0A7S2PSF4_9STRA4.440e-1439.52Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A849Z1T6_9DELT2.380e-1359.42Long-chain fatty acid--CoA ligase n=1 Tax=Polyangi... [more]
A0A7Y5DXK5_9DELT2.380e-1345.92Long-chain fatty acid--CoA ligase n=1 Tax=Polyangi... [more]
A0A7S2XXE0_9STRA2.500e-1343.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4U1HS98_9DELT4.330e-1361.43Long-chain fatty acid--CoA ligase n=2 Tax=Polyangi... [more]
A0A2E5M427_9GAMM5.750e-1360.00Long-chain fatty acid--CoA ligase n=1 Tax=Gammapro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160686contigH-elongata_contig160686:2..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog35128.Thaps262242
EggNOG free text desc.AMP-binding enzyme
EggNOG OGs2XEA3@2836,COG1022@1,KOG1256@2759
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionlong chain acyl-coA synthetase
Ec32 orthologEc-12_008720.1
Exons1
Model size1026
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160686.3887.1prot_H-elongata_contig160686.3887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160686 198..497 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.7519774-UTR-H-elongata_contig160686:1..1971622929942.7519774-UTR-H-elongata_contig160686:1..197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160686 2..197 +
1691679217.1865387-UTR-H-elongata_contig160686:1..1971691679217.1865387-UTR-H-elongata_contig160686:1..197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160686 2..197 +
1622929942.803324-UTR-H-elongata_contig160686:497..10271622929942.803324-UTR-H-elongata_contig160686:497..1027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160686 498..1027 +
1691679217.205903-UTR-H-elongata_contig160686:497..10271691679217.205903-UTR-H-elongata_contig160686:497..1027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160686 498..1027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.7770765-CDS-H-elongata_contig160686:197..4971622929942.7770765-CDS-H-elongata_contig160686:197..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160686 198..497 +
1691679217.1968427-CDS-H-elongata_contig160686:197..4971691679217.1968427-CDS-H-elongata_contig160686:197..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160686 198..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160686.3887.1

>prot_H-elongata_contig160686.3887.1 ID=prot_H-elongata_contig160686.3887.1|Name=mRNA_H-elongata_contig160686.3887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MHVLILMLLIVCTVTVIPLYHYDTAGKKVPAYLPDPRELATLIYTSGTTG
RPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAHCERAAKL*
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mRNA from alignment at H-elongata_contig160686:2..1027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160686.3887.1 ID=mRNA_H-elongata_contig160686.3887.1|Name=mRNA_H-elongata_contig160686.3887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1026bp|location=Sequence derived from alignment at H-elongata_contig160686:2..1027+ (Himanthalia elongata Himel1 dioecious)
TGTTTTCGTCTACCTTGTGACTACGGGTTGGATTTTGACATCAGCTTATA
TGATAATTCAATGAAATCAATCAAAAACGTGAAGATTGTGATCGTTCCCG
CTCTTCTTTTCGCCACTTCAATACATACCGTATTTATTTGCCGAACGTAG
TTATTGATAGTATTATCGTAGGTATCTTGTTATTTTATTTTATTTCATGC
ATGTATTAATATTGATGTTATTAATAGTATGTACCGTTACCGTTATACCG
TTATATCATTATGATACTGCAGGCAAAAAAGTACCCGCGTACCTGCCGGA
CCCTAGGGAGCTTGCGACGCTCATCTACACCTCCGGCACCACGGGCAGGC
CAAAGGGTGTCATGCTCTCCCACGACAACATCATCTCCAACATTGTCGGG
CTTAGGACGGTTCTCCCGACGGACCTGGTGTCGTGCCACGACCGCTCCCT
GAGCTTCCTGCCTTGGGCGCATTGTGAGAGAGCAGCGAAATTATAGCATT
TTCTTGTATTGTGTGTATATGTATTGCATTGTGAGAGAGCACCAAAATCA
TACCAGGGTATATGACGCTTCGAGTTTTAATATTGGTATTAATAGTGCCG
TAGTACAGTACGCAAAATCGATTCGTTGATGATTTATTCCCCCCCCCTCG
CATCATTGATGGTCGATTCTGCGGACGGAGTTCACAGCCCTTGCTTGGCG
AAGGAGCATGCAGTATGTCCCGCTGCTGGGTCTGCGTCCTCCACGTAGTG
TATCGTAGATACCTGAGGACGCTGCTGATTGGTTTAACGAATACTGGAAG
GAAGGGGAGGGGAGGTGTAATGCAAATTTGTTTGTTACCGAGTTTACGGG
GTTCGGTAGTAAAAATACTCGCTTCTGGAATATATATATTGTATACATCC
CTTGTTAGAATTAAATCAATTTAAAATATTTTAATGGTTGGGCGGTATGC
ACTCCTCTTGTATTATTGAGAGGCAAAAATTCAAACTAGCCATTAACGGT
CCAAATTTCCCCTCGAAAGAAACGCC
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Coding sequence (CDS) from alignment at H-elongata_contig160686:2..1027+

>mRNA_H-elongata_contig160686.3887.1 ID=mRNA_H-elongata_contig160686.3887.1|Name=mRNA_H-elongata_contig160686.3887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig160686:2..1027+ (Himanthalia elongata Himel1 dioecious)
ATGCATGTATTAATATTGATGTTATTAATAGTATGTACCGTTACCGTTAT
ACCGTTATATCATTATGATACTGCAGGCAAAAAAGTACCCGCGTACCTGC
CGGACCCTAGGGAGCTTGCGACGCTCATCTACACCTCCGGCACCACGGGC
AGGCCAAAGGGTGTCATGCTCTCCCACGACAACATCATCTCCAACATTGT
CGGGCTTAGGACGGTTCTCCCGACGGACCTGGTGTCGTGCCACGACCGCT
CCCTGAGCTTCCTGCCTTGGGCGCATTGTGAGAGAGCAGCGAAATTATAG
ATGCATGTATTAATATTGATGTTATTAATAGTATGTACCGTTACCGTTAT
ACCGTTATATCATTATGATACTGCAGGCAAAAAAGTACCCGCGTACCTGC
CGGACCCTAGGGAGCTTGCGACGCTCATCTACACCTCCGGCACCACGGGC
AGGCCAAAGGGTGTCATGCTCTCCCACGACAACATCATCTCCAACATTGT
CGGGCTTAGGACGGTTCTCCCGACGGACCTGGTGTCGTGCCACGACCGCT
CCCTGAGCTTCCTGCCTTGGGCGCATTGTGAGAGAGCAGCGAAATTATAG
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