mRNA_H-elongata_contig160665.3886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160665.3886.1
Unique NamemRNA_H-elongata_contig160665.3886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160665.3886.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.770e-21
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 EPGITIDSARFQSLWTRLGAGARSSFDLVGVPRSTDEVEGLLLAKGVSTMASGDKPAAMKFFFY 192
            + GITI+S +FQSLW  LGAG  SSF++  VP ST EVEGLL A+GV+TMASG+KPAAMKFFFY
Sbjct:  714 QTGITINSGQFQSLWAALGAGVESSFEMSKVPASTQEVEGLLTARGVNTMASGNKPAAMKFFFY 777
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BLAST of mRNA_H-elongata_contig160665.3886.1 vs. uniprot
Match: A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.250e-7
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 PGITIDSARFQSLWTRLGAGARSSFDLVGVPRSTDEVEGLLLAKGVSTMASGDKPAAMKFFFY 192
            PG  + + +FQ+LW  L   A     ++  P  T EVEG + A  + TMASGDKP  M+FFFY
Sbjct:  747 PGPAMGAPQFQALWGELAEAAVVQGVVLRAPAGTGEVEGRMSAACLRTMASGDKPETMRFFFY 809
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160665.3886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KH14_9PHAE4.770e-2170.31B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A835YU68_9STRA1.250e-744.44Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160665contigH-elongata_contig160665:824..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.6e-17
Seed eggNOG ortholog2880.D8LNY8
Preferred nameAP4B1
KEGG koko:K12401
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.6993923-CDS-H-elongata_contig160665:823..10151622929942.6993923-CDS-H-elongata_contig160665:823..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160665 824..1015 +
1691679217.1700177-CDS-H-elongata_contig160665:823..10151691679217.1700177-CDS-H-elongata_contig160665:823..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160665 824..1015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160665.3886.1prot_H-elongata_contig160665.3886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160665 824..1015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160665.3886.1

>prot_H-elongata_contig160665.3886.1 ID=prot_H-elongata_contig160665.3886.1|Name=mRNA_H-elongata_contig160665.3886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
EPGITIDSARFQSLWTRLGAGARSSFDLVGVPRSTDEVEGLLLAKGVSTM
ASGDKPAAMKFFFY
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mRNA from alignment at H-elongata_contig160665:824..1015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160665.3886.1 ID=mRNA_H-elongata_contig160665.3886.1|Name=mRNA_H-elongata_contig160665.3886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig160665:824..1015+ (Himanthalia elongata Himel1 dioecious)
GAACCAGGCATCACCATCGATTCCGCCCGCTTCCAAAGCCTCTGGACCCG
TCTGGGGGCAGGGGCGAGGTCGTCGTTTGATCTGGTTGGGGTCCCGCGTT
CGACGGACGAGGTGGAGGGTTTGCTGTTGGCGAAAGGCGTGTCCACCATG
GCATCCGGGGACAAGCCAGCGGCCATGAAGTTTTTCTTTTAC
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Coding sequence (CDS) from alignment at H-elongata_contig160665:824..1015+

>mRNA_H-elongata_contig160665.3886.1 ID=mRNA_H-elongata_contig160665.3886.1|Name=mRNA_H-elongata_contig160665.3886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig160665:824..1015+ (Himanthalia elongata Himel1 dioecious)
GAACCAGGCATCACCATCGATTCCGCCCGCTTCCAAAGCCTCTGGACCCG
TCTGGGGGCAGGGGCGAGGTCGTCGTTTGATCTGGTTGGGGTCCCGCGTT
CGACGGACGAGGTGGAGGGTTTGCTGTTGGCGAAAGGCGTGTCCACCATG
GCATCCGGGGACAAGCCAGCGGCCATGAAGTTTTTCTTTTACGAACCAGG
CATCACCATCGATTCCGCCCGCTTCCAAAGCCTCTGGACCCGTCTGGGGG
CAGGGGCGAGGTCGTCGTTTGATCTGGTTGGGGTCCCGCGTTCGACGGAC
GAGGTGGAGGGTTTGCTGTTGGCGAAAGGCGTGTCCACCATGGCATCCGG
GGACAAGCCAGCGGCCATGAAGTTTTTCTTTTAC
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