mRNA_H-elongata_contig16065.3884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16065.3884.1
Unique NamemRNA_H-elongata_contig16065.3884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: D8LHK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK2_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 1.940e-100
Identity = 274/595 (46.05%), Postives = 323/595 (54.29%), Query Frame = 1 
Query:   10 AANEVRLGHFLQQFPLRAHG-RYHFRFRVPDQLSGYSWMDLSDPTAVLPLHNNMIYAKVLRLDRLPKPRPSRLRRKTPRTVKAVIPERTVGTTSWRQENQAQGRMPQVCKRKKEKREREAFARCVVFVCLWCAARLGQAKNRH-----DQWQSQGQGRPRSASPAHQHHLNSDLHCDIPKGKSATPPSSHRXXXXXXXXXXXRGPPSSVPSRP-QRFESFLSSDPPTGMPHSNNKSTRKPEASVARSNSGSGGGDGLSAQSRPTSFERNRAGAGGLGRKSGDDLLNFGNDPHRSGTHGVPAGAAAPSGGRPK---GRSSPPPGWSTRSGGGMASPSRQSTAGRMQSTPGGSGATPTNEGGATGGGAPGSSSDTTPRS---------------------------------------------SFGGSDGGPDLMNVNASEGLNGGARGKGGDRSAYVRSKVAERERGVEIATKKAVQFKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKEMS 1629
            A +EVRLG FLQ FPLR HG +YHFRFR PDQ+SGY WMD+SDP+AVLP + N+I AK LRLDRLPKPR SRLRRK P    A     T G    R    A  R  +   R++  ++    AR             GQ +         QW +QG  RPRS SPAH H ++ D   D+ KGKS TP     XXXXXXXXXXX            +  E FL SD PTG P +   S R     +A S++  GGG    + +   S +R    AGG GR SG+DLLNFGND   SG  G P  A  PS  RP    GRS  P GW  R      SP     AG   S+ GG  A+P            G  S                                                    F        LMN N+            G +SAYV++KV ERE  ++   +KA++FKK +D AA+KDQ+ +DAAK K+DA LT WAEDHGKKRNVRTLLSTMH VLWEGNRWK +S+ D+IQPSKVKL+YRK+MLLVHPDKCGSLGPEERLIAKRVFEAVNEAY++F EKEMS
Sbjct:   32 AVSEVRLGQFLQAFPLRGHGGQYHFRFRAPDQVSGYCWMDVSDPSAVLPRYGNVICAKALRLDRLPKPRSSRLRRKMPYAAGAAT---TSGGDHLRASGGANSRFTEEAHRRRSAQDYPGNAR----------HHGGQPQQXXXXXXXQQWSNQG--RPRSVSPAHGHQIHHD---DVNKGKSVTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLEEFLFSDSPTGSPRA---SPRAQGGGIAHSSTPRGGGSNSGSNN---SKDRE---AGGEGR-SGEDLLNFGND---SGG-GRPKQAPEPSP-RPTTNGGRSPVPAGWGNRPAAARGSP----VAGGAGSSNGG--ASPQ-----------GRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGF--------LMNFNSPRAGGXXXXXXXGGQSAYVKTKVQEREEELKANVEKALEFKKGIDEAASKDQDAMDAAKVKHDAKLTSWAEDHGKKRNVRTLLSTMHLVLWEGNRWKSVSMGDIIQPSKVKLSYRKAMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYTLFQEKEMS 568
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A6H5JQN3_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN3_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 3.780e-60
Identity = 112/166 (67.47%), Postives = 136/166 (81.93%), Query Frame = 1 
Query: 1132 GPDLMNVNASEGLNGGARGKGGDRSAYVRSKVAERERGVEIATKKAVQFKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKEMS 1629
            GP+LMN N+              +SAYV++KV ERE  ++   +KA++FKK +D AA+KDQ+ +DAAK K+DA LT WA+DHGKKRN+RTLLSTMH VLWEGNRWKP+S+ D+IQPSKVKL+YRK+MLLVHPDKCGSLGPEERLIAKRVFEAVNEAY++F EKEMS
Sbjct:  374 GPELMNFNSPRAGGXXXXXXXXGQSAYVKTKVQEREEELKANVEKALEFKKGIDEAASKDQDAMDAAKVKHDAKLTSWAQDHGKKRNIRTLLSTMHLVLWEGNRWKPVSMGDIIQPSKVKLSYRKAMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYTLFQEKEMS 539
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A835YJL8_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJL8_9STRA)

HSP 1 Score: 172 bits (437), Expect = 5.990e-43
Identity = 82/142 (57.75%), Postives = 111/142 (78.17%), Query Frame = 1 
Query: 1201 RSAYVRSKVAERERGVEIATKKAVQFKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKEM 1626
            +SAYV + + ERE+ +E   ++AVQFKKD D A  ++QE+ DAAK K DA LT WAEDHG+KRN+RTLL+TMH+V+WEG +W+ + + DL+ P+KVK+AYR++ML+VHPDKC     E + IAKRVFEA+NEA++ FA  EM
Sbjct:  315 KSAYVAACMEEREKKIEEDMQRAVQFKKDRDAALVQEQEEFDAAKAKLDAALTGWAEDHGRKRNIRTLLTTMHAVVWEGCKWQQMGMGDLLAPNKVKMAYRRAMLVVHPDKCADETSEHKFIAKRVFEALNEAWATFAAAEM 456
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A7S2XVP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVP6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.400e-33
Identity = 75/149 (50.34%), Postives = 103/149 (69.13%), Query Frame = 1 
Query: 1132 GPDLMNVNASE------GLNGGARGKGGDRSAYVRSKVAERERGVEIATKKAVQFKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEER 1560
            G D   VNA+E      G++ G   K G +S YV+ K+AERE+G++ +T+ A+  K+ +D   A+DQ D D AKQK+ A L  W ED+G KRN+R LLST+H VLW+G RW+ +S+ DL+  +KVK +Y+KSML+VHPDK   LGPEER
Sbjct:   95 GDDPEIVNAAENRHKIKGVSIGGSSKAG-KSQYVQQKMAEREQGLKDSTEAALAAKRALDAKQAQDQVDFDLAKQKFGAALQAWGEDNGNKRNLRVLLSTLHDVLWDGTRWREVSLGDLLDVNKVKRSYQKSMLVVHPDKVVKLGPEER 242
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A7S3HR35_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR35_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.600e-31
Identity = 64/120 (53.33%), Postives = 90/120 (75.00%), Query Frame = 1 
Query: 1264 KAVQFKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKE 1623
            KA++ K++ D    ++Q+D DAA+ K+DA L  W+ ++ ++RN+R+LLSTMH+VLWEG RWK I + DL++P +VKL YRK+ML+VHPD    L  E R I+KR+FEAVNEAY+ F  KE
Sbjct:  177 KALEEKQEQDRKKDQEQDDFDAARAKHDAKLLAWSTNNKERRNIRSLLSTMHTVLWEGTRWKTIGLGDLLEPKQVKLQYRKAMLVVHPDHNVHLTNENRYISKRIFEAVNEAYNEFTTKE 296
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: UPI000711C762 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C762)

HSP 1 Score: 119 bits (297), Expect = 7.630e-26
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1 
Query: 1264 KAVQFKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHG-KKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKE 1623
            KA+  KK+ ++A+   +E+ DAAK KY   L  WA D G +++N+RTLLSTMH+V+W    +KPIS++ L+ P KVKL YRK+ML VHPDK      ++  IA+R+FEA+N A+S F E+E
Sbjct:  162 KALMEKKEREIASEVKEEERDAAKAKYGKQLNAWAYDMGGERKNIRTLLSTMHTVMWSEAEFKPISMAQLLDPDKVKLYYRKAMLRVHPDKVAGGTADQVYIAQRIFEALNNAWSTFQEQE 282
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A7S2G5F3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G5F3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.340e-25
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = 1 
Query: 1201 RSAYVRSKVAERERGVEIATKKAVQ-FKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAE 1617
            +SA+V  K+ +R   V+ A K AV+ ++K +D A  ++Q + D  +   D  L  W+E+HGKK+N+RTLL+ M  ++WEG+ WKP++I DL+    V+   RK+ L VHPDK  +LGPE+R IAKRVF+A+ +AYS F E
Sbjct:  286 KSAHVIEKMKQRRTQVDEAAKDAVEEYRKRVDKAKQEEQVE-DQLRATLDPKLKGWSEEHGKKKNIRTLLAGMDKIMWEGSGWKPVAIGDLLIEGSVRKYRRKADLKVHPDKTANLGPEQRFIAKRVFDALTQAYSEFEE 424
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A7S4D6F5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6F5_HETAK)

HSP 1 Score: 114 bits (286), Expect = 2.670e-25
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1 
Query: 1327 AAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKEMS 1629
            AA  ++ A LT WAEDHGKKR +R LL+++H+VLW G RW+ + + DL+QP+ V+ AY +SM++VH DK   L PE + IA R  E + EAY +F E E+S
Sbjct:  108 AAAARHGARLTAWAEDHGKKRALRALLASLHTVLWPGARWRAVGLGDLLQPAAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS 208
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A7S3XSW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSW5_HETAK)

HSP 1 Score: 114 bits (286), Expect = 3.040e-25
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1 
Query: 1327 AAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKEMS 1629
            AA  ++ A LT WAEDHGKKR +R LL+++H+VLW G RW+ + + DL+QP+ V+ AY +SM++VH DK   L PE + IA R  E + EAY +F E E+S
Sbjct:  113 AAAARHGARLTAWAEDHGKKRALRALLASLHTVLWPGARWRAVGLGDLLQPAAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS 213
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BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Match: A0A7S2YLR4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLR4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.920e-25
Identity = 53/133 (39.85%), Postives = 90/133 (67.67%), Query Frame = 1 
Query: 1201 RSAYVRSKVAERERGVEIATKKAVQFKKDMDVAAAKDQEDLDAAKQKYDATLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAYRKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEA 1599
            +SA+V   V +R   ++ +  KA++  ++ +  A+KD+E+ D  +++ +  +  W+E+HGKK+ +R LL T+H++LW G  WKP+SI D++  SKVK  Y K+  +VHPDK  SL  E+R +AKR+F+A+ +A
Sbjct:  202 KSAHVAGAVNKRINDMKASQDKALREIREREAKASKDKEEEDEVRKRLEPKIKAWSEEHGKKKQLRALLGTLHTILWPGANWKPVSIGDMLDDSKVKKFYHKASRVVHPDKTHSLNSEQRFLAKRIFDALTQA 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16065.3884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK2_ECTSI1.940e-10046.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQN3_9PHAE3.780e-6067.47J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
A0A835YJL8_9STRA5.990e-4357.75J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A7S2XVP6_9STRA3.400e-3350.34Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3HR35_9STRA1.600e-3153.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI000711C7627.630e-2649.59hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A7S2G5F3_9STRA1.340e-2545.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4D6F5_HETAK2.670e-2550.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XSW5_HETAK3.040e-2550.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2YLR4_9STRA8.920e-2539.85Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16065contigH-elongata_contig16065:397..6125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.9
Seed ortholog evalue1.1e-90
Seed eggNOG ortholog2880.D8LHK2
Preferred nameSWA2
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007029,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0022411,GO:0030276,GO:0030544,GO:0031072,GO:0031593,GO:0031982,GO:0031984,GO:0032182,GO:0032781,GO:0032984,GO:0032991,GO:0042175,GO:0043085,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0043624,GO:0043933,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048308,GO:0048309,GO:0050790,GO:0051179,GO:0051234,GO:0051261,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071840,GO:0072318,GO:0072319,GO:0098657,GO:0098827,GO:0140030
EggNOG free text desc.clathrin-coated pit assembly
EggNOG OGsKOG0431@1,KOG0431@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size2482
Cds size1635
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.3939393-CDS-H-elongata_contig16065:396..5191622929942.3939393-CDS-H-elongata_contig16065:396..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 397..519 +
1691679217.0547872-CDS-H-elongata_contig16065:396..5191691679217.0547872-CDS-H-elongata_contig16065:396..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 397..519 +
1622929942.4095247-CDS-H-elongata_contig16065:965..12191622929942.4095247-CDS-H-elongata_contig16065:965..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 966..1219 +
1691679217.0649416-CDS-H-elongata_contig16065:965..12191691679217.0649416-CDS-H-elongata_contig16065:965..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 966..1219 +
1622929942.4441783-CDS-H-elongata_contig16065:1402..15561622929942.4441783-CDS-H-elongata_contig16065:1402..1556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 1403..1556 +
1691679217.0744555-CDS-H-elongata_contig16065:1402..15561691679217.0744555-CDS-H-elongata_contig16065:1402..1556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 1403..1556 +
1622929942.4664793-CDS-H-elongata_contig16065:2142..22981622929942.4664793-CDS-H-elongata_contig16065:2142..2298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 2143..2298 +
1691679217.083663-CDS-H-elongata_contig16065:2142..22981691679217.083663-CDS-H-elongata_contig16065:2142..2298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 2143..2298 +
1622929942.484407-CDS-H-elongata_contig16065:2717..33141622929942.484407-CDS-H-elongata_contig16065:2717..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 2718..3314 +
1691679217.0953317-CDS-H-elongata_contig16065:2717..33141691679217.0953317-CDS-H-elongata_contig16065:2717..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 2718..3314 +
1622929942.5029392-CDS-H-elongata_contig16065:4365..45031622929942.5029392-CDS-H-elongata_contig16065:4365..4503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 4366..4503 +
1691679217.1088483-CDS-H-elongata_contig16065:4365..45031691679217.1088483-CDS-H-elongata_contig16065:4365..4503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 4366..4503 +
1622929942.532863-CDS-H-elongata_contig16065:4731..47941622929942.532863-CDS-H-elongata_contig16065:4731..4794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 4732..4794 +
1691679217.1218793-CDS-H-elongata_contig16065:4731..47941691679217.1218793-CDS-H-elongata_contig16065:4731..4794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 4732..4794 +
1622929942.55195-CDS-H-elongata_contig16065:5128..52781622929942.55195-CDS-H-elongata_contig16065:5128..5278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 5129..5278 +
1691679217.1311765-CDS-H-elongata_contig16065:5128..52781691679217.1311765-CDS-H-elongata_contig16065:5128..5278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 5129..5278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.5665128-UTR-H-elongata_contig16065:5278..61251622929942.5665128-UTR-H-elongata_contig16065:5278..6125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16065 5279..6125 +
1691679217.1398077-UTR-H-elongata_contig16065:5278..61251691679217.1398077-UTR-H-elongata_contig16065:5278..6125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16065 5279..6125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16065.3884.1prot_H-elongata_contig16065.3884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16065 397..5278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16065.3884.1

>prot_H-elongata_contig16065.3884.1 ID=prot_H-elongata_contig16065.3884.1|Name=mRNA_H-elongata_contig16065.3884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=545bp
MSAAANEVRLGHFLQQFPLRAHGRYHFRFRVPDQLSGYSWMDLSDPTAVL
PLHNNMIYAKVLRLDRLPKPRPSRLRRKTPRTVKAVIPERTVGTTSWRQE
NQAQGRMPQVCKRKKEKREREAFARCVVFVCLWCAARLGQAKNRHDQWQS
QGQGRPRSASPAHQHHLNSDLHCDIPKGKSATPPSSHRGGRASPPPPPPR
GPPSSVPSRPQRFESFLSSDPPTGMPHSNNKSTRKPEASVARSNSGSGGG
DGLSAQSRPTSFERNRAGAGGLGRKSGDDLLNFGNDPHRSGTHGVPAGAA
APSGGRPKGRSSPPPGWSTRSGGGMASPSRQSTAGRMQSTPGGSGATPTN
EGGATGGGAPGSSSDTTPRSSFGGSDGGPDLMNVNASEGLNGGARGKGGD
RSAYVRSKVAERERGVEIATKKAVQFKKDMDVAAAKDQEDLDAAKQKYDA
TLTVWAEDHGKKRNVRTLLSTMHSVLWEGNRWKPISISDLIQPSKVKLAY
RKSMLLVHPDKCGSLGPEERLIAKRVFEAVNEAYSVFAEKEMSG*
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mRNA from alignment at H-elongata_contig16065:397..6125+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16065.3884.1 ID=mRNA_H-elongata_contig16065.3884.1|Name=mRNA_H-elongata_contig16065.3884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5729bp|location=Sequence derived from alignment at H-elongata_contig16065:397..6125+ (Himanthalia elongata Himel1 dioecious)
ATGAGCGCAGCGGCGAACGAGGTGCGCCTCGGACACTTCCTTCAGCAGTT
CCCGCTCCGAGCGCACGGGCGATACCACTTCCGGTTTCGAGTGCCAGATC
AGCTGTCGGGCTATAGTTGGATGGTGAGGGGGGGGGAGGCGGAAGAAGGG
GATTTTGAATTCTCACATAAGCTGATATGGAAAGGCGTCTGTTCTGAACA
ATATGATTTCTGCGTGAGGAAGACTTCAGGAAGTTCGTGGTCTTTACGAA
GCCGCGCTTTTCTTCTCCTTATATAATATACTTAGTAGATTTACTAAAGT
CAACAACACCCATTCCTCGCATTCTCCTCGCATTTCTCGCATTTCCGTCC
AACGCTTGCGACAGTGCAAGGCACTCACAAGACTGTCGTCATGTCTTCCG
TTAGGCCGCCGCTTTCACTGTTTGTGTTCTGTTTTGCACCTGGTATACTT
TTCTAATCATTCCTAGCTACTCCCGCTTTTTTTTTGCGTCGAGCGGACAG
AAGCACCAACCATCTACACTTTCCCGTCTCGTCCCCTTCCCCCCACCTCG
CACTACCTCGGCCTGGCAGGACCTAAGTGACCCGACCGCAGTGCTTCCGC
TGCACAATAACATGATATACGCTAAAGTCCTCCGATTGGATCGTCTTCCG
AAGCCCAGGCCGTCGCGGCTGCGCAGGAAGACCCCGCGCACAGTGAAGGC
GGTGATTCCCGAGCGCACCGTGGGGACCACCTCCTGGCGACAGGAGAACC
AGGCTCAAGGACGGATGCCGCAGGTTTGTAAGAGAAAAAAGGAAAAGAGA
GAGAGAGAGGCGTTCGCAAGGTGGTCGTGGCCGTATCCCCTTTTTTTATT
TATTTGTGCAATATAGACGATTTTTTATGAGTGGCGCTCGTGAAGCGGAA
CTCGCTCAGCTCTGCTCCATTTTGAAGAAAGATGCGCAATGCTGGCAACT
ACGTCATCGAATCTGGTCAAAGCGCATGCGAAGTTCCGGTTCCTGAAGTG
CTGAAGCGTTGTTTTTGTTTGTTTGTGGTGCGCCGCTCGACTGGGGCAGG
CTAAAAATCGTCACGATCAGTGGCAAAGCCAGGGTCAGGGACGACCTCGC
AGCGCCTCGCCGGCTCACCAGCACCACCTCAACAGCGACCTCCACTGCGA
TATTCCCAAGGTGCGTATCGTTGCCTTGTACTACGTATCTTGCCTGTTCT
ATGTCTGCGTTTACAGTCTGTCGTGTTTGTGTGTGTAATTGTTTTTACGG
GTGTTTGTGTACGCTAGTGTGTGTTTCGTAAGAGCCCCACTCTCTCATCT
CGGCATGTAGTCGAAACAGAAAGTGATAAAGTTGTCGTCGATCTCATTCG
CGGTAGGACCGTGACGCGCGCTCGCAAGCTTGCGCTATATCATGTTGGTT
TACAGTTTCTATCCCAGTCGTATCCCAGGTATATTTAAAGGGCTCTAGTC
TCGTGTGGTGTAGCACTTGCTTGCATCCGTAACACGTGGTCAAAATGTCC
GGCGCGTAGTCACGAGTTCAAGTCGTTGCGCCTCTCCCAACCCGAGGAGG
CTCTTCGTCACCCTCCACCACATGCGCGCCCTCGAAGCTCCCGGCGAGTA
GGCGCGTGCCTCAACTCCACCGGTGGACGTGAAGGCGCGAAGGCGAATTG
TGTGTGATATTTTTACGCTGTTGTAGCCAACCGCTTTCGGGGGCATTTCT
TTTCCCCCTACCGCATAATTTTACTCTTGTAATCGTCCCTCGATAGGGGA
AAAGCGCAACTCCTCCTTCGAGCCACAGAGGCGGTAGGGCGTCGCCGCCG
CCGCCGCCGCCGAGAGGCCCTCCTTCATCAGTTCCGTCTCGCCCTCAACG
CTTTGAATCGTTCTTATCCTCGGACCCGCCCACGGGAATGCCTCATTCCA
ATGTCGGTCCGCAGGTGCGCAGCAACGGGGACTTTCAGGTGAGGCTCAGG
AAGGGAAGAGTTAATGCGGACGCGCCCCCATCTACCCCCCCCCTCTCTCT
CTCTCTCTCTCTCCCTGAATCCTTAACGTCTACACGCTCGTTTGTTCCCT
CCACCGTTCGTGCTGGGGTCAACACGTCGCCTTTAGATAATCCGGACAAA
AATAATACTCTATGTAGGACGAATGGCTTTCGTGCTTTGTATTGTACTAT
TTGTTACTTTTTTGTTGAAATTGTTTTATTTGGGGTTGGGGGGGAGGTTC
CGAGGTTGCGTACGTCGCAACTTGGGGTGCCTCGCCAAGCCGTTTCCCTC
TGCTTCAGCGGGAGTTTCGTATTTCGGCAGCGTATAATCAACGGCAGCGT
TTTTCTTTCCAGTCCGTTCAGAACAAATCGACGCGGAAACCAGAGGCGTC
TGTGGCACGGAGTAACAGCGGAAGCGGTGGTGGGGATGGGTTAAGCGCGC
AATCGCGCCCGACCAGCTTCGAGAGAAACCGAGCCGGCGCCGGTGGCCTG
GGTAGAAAATCAGGCGATGACCTCCTGAACTTTGGGAACGATCCGCATCG
TTCTGGCACCCACGGCGTTCCCGCCGGCGCAGCGGCACCATCAGGCGGAC
GGCCGAAAGGCCGAAGCTCCCCACCACCGGGGTGGAGCACCCGTTCAGGT
GGCGGAATGGCGTCGCCGAGCAGACAATCGACCGCGGGGCGAATGCAGAG
CACACCGGGCGGATCGGGTGCTACGCCAACGAACGAAGGCGGGGCGACCG
GCGGGGGAGCGCCAGGCTCTAGCAGCGACACCACACCTCGGTCGAGCTTT
GGAGGGAGCGATGGGGGACCGGACTTGATGAACGTTAATGCGAGCGAAGG
GCTAAACGGCGGAGCGCGCGGGAAGGGTGGGGATAGGTCTGCGTACGTAC
GGTCGAAAGTGGCGGAGAGAGAAAGGGGCGTGGAGATAGCCACGAAGAAG
GCGGTACAGTTCAAGAAGGTGTGTATGTCTACTAGTGATACGCTCCCAAT
AGGGGATGGATGATATTGTGTGTATTGATTAAATTGAACATAGCCGTTCA
ATCCGGCCCTGTCGTGCTAGTCATTATATGCCACTCGCATTGGTTCTCTC
AATGAGGTATCAAGGATTATTTTTACGTGAACCTCTGATCAGATGCGACA
ACTCTCTCTAGTTCTCATGTAAGCTCTCAAGCGTTTTTTCTCTTCCCTCT
TTGGTTCATCGATCACTAAATAGCATCGGTCGGCACTTACTATCAATAGA
CCAACGCTTTTTGCTCCTGCCGCCCATATTTCCTATGTGTATGTGTGGGT
GCGTGTTTGTATGGTTGTGCGTATGTTATGTTGTGTTTGTATTGAGGTTT
TGTGTTCATGCGTGTGTGTGTGTGTGTGTGGCCATAGCGGGAATCTTCGC
TAAAATTGGCCGGGTGCTTTGTTGAGGTGGCGGTGCGGAGCTGTACAACA
ACACGTCCATTTACCGTGTTTTGTGGTATATCTCTCTCTTCTTAAGCCTC
AATATATCAAAGATTCCGTTGGTTATTGCCCACGATGATTAAAGTTCATG
CAAGCTGCCGGGAGTGTTGGGCAAAGGGCCTTCGTTGGAACTTGAACTCG
TGAGCCCTTTAACAATCTAGATGCTTTCGCATTCGCGTGAAGCTTGCCAT
TTGGGTCGATCCGGTCGCACACGGTCGTGGCGATGCAACTTCACGCGCTC
CGTACTTGTCATCGAACGCGACTGGCTCCCCTCCACCTGAATTCGAAAAT
AGTCTTTTAGGGAGCATCCCCCTCCCCCCGGATAAACAAAATTCCCACCT
ACGTTTCTCCGCGATGTGATAATTCTGGGATTCTTCCAACGCTGTACGCT
GTTTTAACCGTGTTAGTCACGCCGCCGTATAAGCGAATAAAGGGGGGATG
GTTAGCTGTCTATCCCCCTGGTCAAGGAGGCGTAATCCCCCCCCCTTATA
TACACTACGATTTTGCTCGAGATCGACGGCACGCGATTCTTGCCGAAACG
CGACGCACCCGCTCCTCAGGATATGGATGTGGCGGCAGCCAAGGATCAGG
AAGACCTGGACGCGGCGAAGCAGAAGTACGACGCTACGCTCACGGTTTGG
GCCGAGGACCATGGGAAAAAGAGAAACGTTCGGACGCTGCTGTCAACAAT
GCACTCGGTGGGTGGAAAAGAAAGGTGCTTCTTGCACACATGTGGTAGGG
AAAGGTTGCGCCGCTGTTCCGGCGTGCTTGGCCTTTCCAGAGATGTGCCC
GAAGTCACGCAGGGTATCGGTGGACACGTGTTCGTCGGCGATGAGAGGCA
TCCTTGTGCTTGGCTATCTCCGCTGCAGGCGAGGCGGAATTCCAAATAAA
GAACTCGAGCTTTTGCTTCTCCTCTCGCGTGGCAGGTTCTTTGGGAAGGA
AACCGCTGGAAGCCGATTTCCATATCAGACCTGATACAGCCGTCCAAGGT
GAGATCCTGATCTCGGGTCGAGAATTGCAAGTCCCACGACTCGAAAGGGG
CCCCCACCCTCGAGAGTAGGGTCCGCTTTTCTCTCGACGGACGACGCCGT
CGATAAAGCCGTTCGACCGGGGATGGACTCGGCGTGCCCCTAGGGGTCAT
CATTTTTTTTGTACATTAACGAGCTTCCATCGTATTGTCGAAGGATGTCG
CTTTCTTTTCGCCTGAAAACGTTTTCACGCATTTCTCGCCTTTAAAAAAA
CGAGGGGTTTTAATACTAAAATTTGAGAAGCCATTTAAAAATTAAAATAT
CTCCGCGCCGCGCCGTTGTGTTTCGTCGGCAGGTGAAGTTAGCCTACCGT
AAATCGATGCTTCTCGTGCATCCAGACAAGTGTGGTTCGCTTGGCCCAGA
GGAGCGATTGATCGCAAAGCGCGTGTTTGAGGCTGTAAATGAGGCCTACT
CAGTGTTTGCGGAGAAGGAAATGTCCGGCTAGCTTTTCCGAGTCGGTTTT
TTATGTTGGGGTTTGTTTATGGTATGTGTTTTGGCACACCGCAATTGGCG
GCGTTGTGGTTGGTAGTTCACAAGGTGACGAGGACACGAACACGCTTCAT
ACGAGCTTTGACGTGGGAGTCTTGCGCTGAAGACGCTGCTGTCGTCAAAT
ATTTTTCGGGACAGGACGGAGATTGCTAAACGGCCGTCGTCGGATCCTCC
AACCGCTTCTTGTGTGTGTATGTCTCAATAGTGTGTACGTCGTCTCGTTC
GTGCTGGGAAAGAGGGTGTAGCATGAGAATCCTGCGGTGCGTGATCGCGC
GTGACGCTTTTGCTCGTGTTTATTTGCCCGCCCCGGTGCTGTTGCGATTA
GGAACCGAGAATCTTCTCATTTATCGTCCACTCTCTGCTCGTCGTGGCTG
TCGTTATATTGATGCATACGAATGTACTTTTTAGTTAAGGGCTGGCTCTG
ATCAATCTTTTGCTGATCGATTTGTCGCCGGACAAAGTTATGTGTTGTTC
GTTTCCCTGCCCTAACGTGGCGGAAAAGAATCAGGGGGCGATAGAGTGCT
TCTCGCGCTTGTTTTTTTTTTTTTATATATAGGTTCTTGGTGAGGTGTCC
CTACATTTTCAGGCTCTCGACGAAAGCATTTTGTTTTACACATTATACTT
CCGACGATATATAGTAATAATACTACTGCTTCCTTTCTACATTACGACGA
AATTACGAACATAGTCGGCACGAAGAGAGGCTTGACACGTACGGGAGTGA
AAGGGTGAGAAGAAACATGAGCACAACACGTCTGAACTCTGACTCTCAGC
CACTCGACTCGCGATCGCCATCGTCATCA
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Coding sequence (CDS) from alignment at H-elongata_contig16065:397..6125+

>mRNA_H-elongata_contig16065.3884.1 ID=mRNA_H-elongata_contig16065.3884.1|Name=mRNA_H-elongata_contig16065.3884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3270bp|location=Sequence derived from alignment at H-elongata_contig16065:397..6125+ (Himanthalia elongata Himel1 dioecious)
ATGAGCGCAGCGGCGAACGAGGTGCGCCTCGGACACTTCCTTCAGCAGTT
CCCGCTCCGAGCGCACGGGCGATACCACTTCCGGTTTCGAGTGCCAGATC
AGCTGTCGGGCTATAGTTGGATGATGAGCGCAGCGGCGAACGAGGTGCGC
CTCGGACACTTCCTTCAGCAGTTCCCGCTCCGAGCGCACGGGCGATACCA
CTTCCGGTTTCGAGTGCCAGATCAGCTGTCGGGCTATAGTTGGATGGACC
TAAGTGACCCGACCGCAGTGCTTCCGCTGCACAATAACATGATATACGCT
AAAGTCCTCCGATTGGATCGTCTTCCGAAGCCCAGGCCGTCGCGGCTGCG
CAGGAAGACCCCGCGCACAGTGAAGGCGGTGATTCCCGAGCGCACCGTGG
GGACCACCTCCTGGCGACAGGAGAACCAGGCTCAAGGACGGATGCCGCAG
GTTTGTAAGAGAAAAAAGGAAAAGAGAGAGAGAGAGGCGTTCGCAAGGTG
GACCTAAGTGACCCGACCGCAGTGCTTCCGCTGCACAATAACATGATATA
CGCTAAAGTCCTCCGATTGGATCGTCTTCCGAAGCCCAGGCCGTCGCGGC
TGCGCAGGAAGACCCCGCGCACAGTGAAGGCGGTGATTCCCGAGCGCACC
GTGGGGACCACCTCCTGGCGACAGGAGAACCAGGCTCAAGGACGGATGCC
GCAGGTTTGTAAGAGAAAAAAGGAAAAGAGAGAGAGAGAGGCGTTCGCAA
GGTGCGTTGTTTTTGTTTGTTTGTGGTGCGCCGCTCGACTGGGGCAGGCT
AAAAATCGTCACGATCAGTGGCAAAGCCAGGGTCAGGGACGACCTCGCAG
CGCCTCGCCGGCTCACCAGCACCACCTCAACAGCGACCTCCACTGCGATA
TTCCCAAGCGTTGTTTTTGTTTGTTTGTGGTGCGCCGCTCGACTGGGGCA
GGCTAAAAATCGTCACGATCAGTGGCAAAGCCAGGGTCAGGGACGACCTC
GCAGCGCCTCGCCGGCTCACCAGCACCACCTCAACAGCGACCTCCACTGC
GATATTCCCAAGGGGAAAAGCGCAACTCCTCCTTCGAGCCACAGAGGCGG
TAGGGCGTCGCCGCCGCCGCCGCCGCCGAGAGGCCCTCCTTCATCAGTTC
CGTCTCGCCCTCAACGCTTTGAATCGTTCTTATCCTCGGACCCGCCCACG
GGAATGCCTCATTCCAATGGGAAAAGCGCAACTCCTCCTTCGAGCCACAG
AGGCGGTAGGGCGTCGCCGCCGCCGCCGCCGCCGAGAGGCCCTCCTTCAT
CAGTTCCGTCTCGCCCTCAACGCTTTGAATCGTTCTTATCCTCGGACCCG
CCCACGGGAATGCCTCATTCCAATAACAAATCGACGCGGAAACCAGAGGC
GTCTGTGGCACGGAGTAACAGCGGAAGCGGTGGTGGGGATGGGTTAAGCG
CGCAATCGCGCCCGACCAGCTTCGAGAGAAACCGAGCCGGCGCCGGTGGC
CTGGGTAGAAAATCAGGCGATGACCTCCTGAACTTTGGGAACGATCCGCA
TCGTTCTGGCACCCACGGCGTTCCCGCCGGCGCAGCGGCACCATCAGGCG
GACGGCCGAAAGGCCGAAGCTCCCCACCACCGGGGTGGAGCACCCGTTCA
GGTGGCGGAATGGCGTCGCCGAGCAGACAATCGACCGCGGGGCGAATGCA
GAGCACACCGGGCGGATCGGGTGCTACGCCAACGAACGAAGGCGGGGCGA
CCGGCGGGGGAGCGCCAGGCTCTAGCAGCGACACCACACCTCGGTCGAGC
TTTGGAGGGAGCGATGGGGGACCGGACTTGATGAACGTTAATGCGAGCGA
AGGGCTAAACGGCGGAGCGCGCGGGAAGGGTGGGGATAGGTCTGCGTACG
TACGGTCGAAAGTGGCGGAGAGAGAAAGGGGCGTGGAGATAGCCACGAAG
AAGGCGGTACAGTTCAAGAAGAACAAATCGACGCGGAAACCAGAGGCGTC
TGTGGCACGGAGTAACAGCGGAAGCGGTGGTGGGGATGGGTTAAGCGCGC
AATCGCGCCCGACCAGCTTCGAGAGAAACCGAGCCGGCGCCGGTGGCCTG
GGTAGAAAATCAGGCGATGACCTCCTGAACTTTGGGAACGATCCGCATCG
TTCTGGCACCCACGGCGTTCCCGCCGGCGCAGCGGCACCATCAGGCGGAC
GGCCGAAAGGCCGAAGCTCCCCACCACCGGGGTGGAGCACCCGTTCAGGT
GGCGGAATGGCGTCGCCGAGCAGACAATCGACCGCGGGGCGAATGCAGAG
CACACCGGGCGGATCGGGTGCTACGCCAACGAACGAAGGCGGGGCGACCG
GCGGGGGAGCGCCAGGCTCTAGCAGCGACACCACACCTCGGTCGAGCTTT
GGAGGGAGCGATGGGGGACCGGACTTGATGAACGTTAATGCGAGCGAAGG
GCTAAACGGCGGAGCGCGCGGGAAGGGTGGGGATAGGTCTGCGTACGTAC
GGTCGAAAGTGGCGGAGAGAGAAAGGGGCGTGGAGATAGCCACGAAGAAG
GCGGTACAGTTCAAGAAGGATATGGATGTGGCGGCAGCCAAGGATCAGGA
AGACCTGGACGCGGCGAAGCAGAAGTACGACGCTACGCTCACGGTTTGGG
CCGAGGACCATGGGAAAAAGAGAAACGTTCGGACGCTGCTGTCAACAATG
CACTCGGATATGGATGTGGCGGCAGCCAAGGATCAGGAAGACCTGGACGC
GGCGAAGCAGAAGTACGACGCTACGCTCACGGTTTGGGCCGAGGACCATG
GGAAAAAGAGAAACGTTCGGACGCTGCTGTCAACAATGCACTCGGTTCTT
TGGGAAGGAAACCGCTGGAAGCCGATTTCCATATCAGACCTGATACAGCC
GTCCAAGGTTCTTTGGGAAGGAAACCGCTGGAAGCCGATTTCCATATCAG
ACCTGATACAGCCGTCCAAGGTGAAGTTAGCCTACCGTAAATCGATGCTT
CTCGTGCATCCAGACAAGTGTGGTTCGCTTGGCCCAGAGGAGCGATTGAT
CGCAAAGCGCGTGTTTGAGGCTGTAAATGAGGCCTACTCAGTGTTTGCGG
AGAAGGAAATGTCCGGCTAGGTGAAGTTAGCCTACCGTAAATCGATGCTT
CTCGTGCATCCAGACAAGTGTGGTTCGCTTGGCCCAGAGGAGCGATTGAT
CGCAAAGCGCGTGTTTGAGGCTGTAAATGAGGCCTACTCAGTGTTTGCGG
AGAAGGAAATGTCCGGCTAG
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