mRNA_H-elongata_contig16053.3880.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16053.3880.1
Unique NamemRNA_H-elongata_contig16053.3880.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16053.3880.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 3.990e-68
Identity = 201/338 (59.47%), Postives = 236/338 (69.82%), Query Frame = 1 
Query:  163 MMEALKRSTDVDTLSFHNAGLSDATVDSLVEGLPHTTVRCLCLDYNQ-PLTLPFS---TQHASNGSEGGSLDEEDGNNPSASTLSS--RNLPGLVCEASKLRQLQLRGNGIDDAEAVALAEAIEGNDVLCSLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAELEKRAEVEAIITAQNKAAAQEKKKKKPLINAETRLPLSIVTW----DSDKRAIAGGSKSLAALNLSENPELGAGGALVKLLEKIAEARNSDEEEGKSGQD---GTPGEAVALQELHVARCRVFAEDDEGQT-ASVAAAADALKPTVVTL 1134
            MMEALKRS+DVDT+ FHNAGL+ A++D LVEGLPHTTVRC  LDYN  P+ L  S   T+   +G    +L+E     P+    SS  RN  GLV E SKL+ L LRGN + DAEA+ALAEAIE         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAE EKRA  +  I AQNK AA   KKKK     ETRLPLS VT     D   RA+AGGS+SLAALNL++N +LG GGAL  LL +I  AR   EE G++G+    G  G +V LQELH+ RC+ +AE+  G+   ++AA + AL+PT V +
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNTLPVVLSSSSPPTRPPPSGPTEPALEEA----PATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDA-KVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARK--EEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 331
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BLAST of mRNA_H-elongata_contig16053.3880.1 vs. uniprot
Match: A0A7S1XLH0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLH0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-11
Identity = 57/181 (31.49%), Postives = 83/181 (45.86%), Query Frame = 1 
Query:    1 DSPSSCSIFQVPEHPCLVSRRLTKGSNEATIPKASSEQHIRFQNFIVDLTTLRIMMEALKRSTDVDTLSFHNAGLSDATVDSLVEGLPHTTVRCLCLDYNQPLTLPFSTQHASNGSEGGSLDEEDGNNPSASTLSSRNLPGLVCEASKLRQLQLRGNGIDDAEAVALAEAIEGNDVLCSLN 543
            D  ++C+   V  HP +++  LT           ++E H+R  N   D  +L  ++E LK    V  L FHNA LS A+V+ L   LP TTV  L +D+N    +P  + +A+                            L  +ASKLR L LRG G+D+   +ALA  +E N  L +LN
Sbjct:  143 DLKAACAAAGVEPHPHMLAHPLTGAP-------VTAEVHVR--NMQCDRNSLACLLEVLKAHPAVAALRFHNAALSQASVELLAARLPETTVGTLAVDFNDAAAVPDKSAYAA----------------------------LAGKASKLRVLSLRGCGLDEGAGLALAANLEVNVGLRALN 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16053.3880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT35_ECTSI3.990e-6859.47Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A7S1XLH0_9STRA2.360e-1131.49Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16053contigH-elongata_contig16053:716..3722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue8.6e-58
Seed eggNOG ortholog2880.D7FT35
KEGG koko:K09257
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons3
Model size1137
Cds size1137
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16053.3880.1prot_H-elongata_contig16053.3880.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16053 716..3722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.0672984-CDS-H-elongata_contig16053:715..12801622929942.0672984-CDS-H-elongata_contig16053:715..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16053 716..1280 -
1691679216.9196312-CDS-H-elongata_contig16053:715..12801691679216.9196312-CDS-H-elongata_contig16053:715..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16053 716..1280 -
1622929942.0887623-CDS-H-elongata_contig16053:2819..29551622929942.0887623-CDS-H-elongata_contig16053:2819..2955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16053 2820..2955 -
1691679216.9307432-CDS-H-elongata_contig16053:2819..29551691679216.9307432-CDS-H-elongata_contig16053:2819..2955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16053 2820..2955 -
1622929942.1114335-CDS-H-elongata_contig16053:3286..37221622929942.1114335-CDS-H-elongata_contig16053:3286..3722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16053 3287..3722 -
1691679216.9406714-CDS-H-elongata_contig16053:3286..37221691679216.9406714-CDS-H-elongata_contig16053:3286..3722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16053 3287..3722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16053.3880.1

>prot_H-elongata_contig16053.3880.1 ID=prot_H-elongata_contig16053.3880.1|Name=mRNA_H-elongata_contig16053.3880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=379bp
DSPSSCSIFQVPEHPCLVSRRLTKGSNEATIPKASSEQHIRFQNFIVDLT
TLRIMMEALKRSTDVDTLSFHNAGLSDATVDSLVEGLPHTTVRCLCLDYN
QPLTLPFSTQHASNGSEGGSLDEEDGNNPSASTLSSRNLPGLVCEASKLR
QLQLRGNGIDDAEAVALAEAIEGNDVLCSLNLFGNKISDVGAAAFAKSLR
LNSVLRALSLANNRLTSASAEAFGLLLAGGYEVLPAELEKRAEVEAIITA
QNKAAAQEKKKKKPLINAETRLPLSIVTWDSDKRAIAGGSKSLAALNLSE
NPELGAGGALVKLLEKIAEARNSDEEEGKSGQDGTPGEAVALQELHVARC
RVFAEDDEGQTASVAAAADALKPTVVTL*
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mRNA from alignment at H-elongata_contig16053:716..3722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16053.3880.1 ID=mRNA_H-elongata_contig16053.3880.1|Name=mRNA_H-elongata_contig16053.3880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3007bp|location=Sequence derived from alignment at H-elongata_contig16053:716..3722- (Himanthalia elongata Himel1 dioecious)
GACTCTCCCTCGTCTTGCAGTATTTTCCAGGTACCCGAACATCCATGCCT
GGTGTCGCGTCGGTTGACGAAGGGCTCAAACGAGGCCACGATCCCCAAGG
CGTCGTCGGAGCAACATATACGATTTCAGAACTTCATCGTAGACCTCACG
ACCCTTCGGATAATGATGGAGGCGCTGAAGCGGTCCACGGACGTCGACAC
GCTCAGCTTCCACAACGCCGGGCTATCAGACGCCACCGTGGACAGCCTAG
TCGAAGGACTGCCACACACGACCGTCCGCTGCCTGTGCTTGGACTACAAC
CAACCATTGACGTTGCCGTTTTCAACACAACATGCATCAAATGGGTCGGA
GGGTGGCTCGCTCGACGAAGAAGACGGAAATAATCCGTCGGCATCTACCT
TATCCTCGAGAAATTTACCAGGGCTCGTCTGTGAAGGTGCGGGAGACGCA
GGAATGGCTTGCTCATAGGGGGCGCCACCCTCTTATCTAGAACTATTTCT
GCCAGAAGGGTCACGCATGGACAACGCATGCTGCATATTATTTGCGCCGC
TTTCAGCGGTGAGGGACCTGGGTCTACCAGAAAACGCGATCTCGTTTACC
GTACGTAGTTACCTCTCTACCAGTGAGTTTGAGGTATTTAGCCCTGTCCG
AGCGTTGGAAAGGTTTCGAAAGGAGTGAGGATCCCCGATATTCCTTCTTA
TACCCGAAAGTAATTGCCCGCACGCCAAACAACACGTTTTTGGGGGGGTA
ACTCGCGGTATCCGAAGCCTCCAAGCTTCGGCAGCTGCAGCTGAGAGGTA
ACGGTATCGACGACGCCGAAGCTGTGGCGCTTGCGGAGGCCATCGAGGGG
AATGATGTCCTCTGCTCGCTGAATCTCTTCGGTAACAAGATCTCGGACGT
CGGGTGAGCAAGCCCGCTATGGTCTACACCCCACCCCACACCCNNNNNNN
NNNAGAATAATGAGTTACTATGTATTAAAGACATGACTGCAAGTGGTCTA
GGGGTCGCCTTTATAACGAAGACATTTAGCATGATCGCTTGTTCGAATCC
CACCTCAAACGTTTGTTAAGGGGCCATCTAGTAATAGAGACTTAGTCCGT
GACGAGTGGAGAACCCGGTGGCATTATTTTGCTCGTTTATAAGGCTAACC
CTAGACCATTATTTGTAGTCACGTAGTAATTGGCAGTGGTTTAGGGGTTA
GTCTTGTGTGTATGTGTGTGTAGCATCAAGCAGAGTATGGATCCATCGGA
TATGGTTGCCAGTCCAGCTTGTGGTAAGCTGAGGGAAAATATGGGGTGGG
GGGGGGGCGTATTTGCTAACCAATATGGCGCCCCCTTACGTGTCACGTTG
GTTTGCGCGGTGTAATGCAAATACATTTTATCATGAGATGAAACTAATGG
TTTGTCGTTCGCGTGGTTCTCACCACGGGTAGTCGCACAACGTTGTAGAG
CAATTTTTATACGATACACGATGTGAACGAGCGACCAATCCAAAGATTAA
GTGGGGGGGGGGGGGGGAAAAAAATGGGCCCCCATTTTCTAAAAAAATTA
TCCAATTTCGTCCCCTTCCGGGNNNNNNNNNNTTTTGTCGTTTATTGAGA
GGTAATAGCGATCATGCGGGTATCTGTCGTGGGGGGGGGGGGGGGTTGTT
GGGGTTTAACATAATGGTCCCCGATTTTCGAAAGAAATTATCCAATTTCG
TCCCCTTCCGGGGATACAATCGTCGTATTCCCGGTCGTGGCACACTTCAT
ATGTGATATCTGAATACAATAAAAGACGGGACGGATACGTTTTGTCCCCA
GGAGGGGACACATTTCACATGTCCCCTCCACGAACCGGGGGCGTTTTAGT
AAGTTAGCCCCTCCCCCCTATCGTTGGATTGCTCGAGCAAGCAATTATTT
CGGTTTAACGTACTGCGCGCGTCGAGTCTTCAGTATTATTTACTACTAAG
CTACAATTTAGAGTTATTTTATATATACCCTGGTATTAGTTAAGTTCGTA
CGGATGACCCTTTCCCTTCCACACGCAACCTGGAGGCGCGTAAAAATAAC
GCCTGTGTTTATTTCGCGTGGGTCGTGGATTTCCACCGTGTATTTATGTA
TATTGTTTGCGGTGGAGCCTTGGGGGGACTGGGCGTTGCCGTCTTAAATG
CCCTCTTTTTTCTTCTCGGACACCGCAAACGAGCGATTGCCCTGAAGGAT
CACTTTTTTCCCGCTCCGCGTATGATTCGCGGCTGTAACCAGGACTACCC
AACACCCCCCCTGTCCATATACATGCACGCCGGGAACTTGCACGCATACA
ACTATACCTACACTTTTCTACTGGCTACCGCCCGACTGTTTCGCCGTGTT
TTTATTAATGTCCGCTTGCAAAACTAGCTGTTATTCAAACCTCCCCGGGT
CTGCCCCGCCCCCCCTCCCAACTTCCCAAACAAATTTCGCAGTGCTGCCG
CGTTCGCGAAAAGCTTGAGGCTGAACAGCGTCCTGCGGGCCCTTTCTCTG
GCGAATAACCGCCTGACGTCGGCCTCGGCCGAAGCCTTTGGCCTTCTGCT
GGCGGGGGGCTACGAGGTCCTCCCCGCGGAGCTCGAGAAGCGAGCGGAAG
TGGAGGCAATCATCACAGCGCAGAATAAGGCTGCAGCCCAGGAGAAGAAG
AAAAAGAAGCCCCTCATTAACGCGGAGACGCGGCTACCGCTGAGCATCGT
GACTTGGGACAGTGATAAGAGGGCCATCGCCGGCGGGAGTAAAAGCTTAG
CAGCGCTTAACTTATCCGAGAATCCAGAGCTCGGCGCCGGGGGCGCGCTG
GTCAAGCTCCTCGAGAAGATTGCCGAAGCGAGGAATAGTGATGAGGAGGA
GGGGAAGTCAGGACAGGACGGCACCCCGGGCGAAGCGGTCGCGCTGCAGG
AGCTTCACGTCGCGCGCTGCAGGGTGTTTGCTGAAGATGACGAAGGGCAG
ACGGCATCAGTCGCGGCGGCTGCCGACGCGCTGAAGCCTACTGTTGTGAC
TTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16053:716..3722-

>mRNA_H-elongata_contig16053.3880.1 ID=mRNA_H-elongata_contig16053.3880.1|Name=mRNA_H-elongata_contig16053.3880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2274bp|location=Sequence derived from alignment at H-elongata_contig16053:716..3722- (Himanthalia elongata Himel1 dioecious)
GACTCTCCCTCGTCTTGCAGTATTTTCCAGGTACCCGAACATCCATGCCT
GGTGTCGCGTCGGTTGACGAAGGGCTCAAACGAGGCCACGATCCCCAAGG
CGTCGTCGGAGCAACATATACGATTTCAGAACTTCATCGTAGACCTCACG
ACCCTTCGGATAATGATGGAGGCGCTGAAGCGGTCCACGGACGTCGACAC
GCTCAGCTTCCACAACGCCGGGCTATCAGACGCCACCGTGGACAGCCTAG
TCGAAGGACTGCCACACACGACCGTCCGCTGCCTGTGCTTGGACTACAAC
CAACCATTGACGTTGCCGTTTTCAACACAACATGCATCAAATGGGTCGGA
GGGTGGCTCGCTCGACGAAGAAGACGGAAATAATCCGTCGGCATCTACCT
TATCCTCGAGAAATTTACCAGGGCTCGTCTGTGAAGGACTCTCCCTCGTC
TTGCAGTATTTTCCAGGTACCCGAACATCCATGCCTGGTGTCGCGTCGGT
TGACGAAGGGCTCAAACGAGGCCACGATCCCCAAGGCGTCGTCGGAGCAA
CATATACGATTTCAGAACTTCATCGTAGACCTCACGACCCTTCGGATAAT
GATGGAGGCGCTGAAGCGGTCCACGGACGTCGACACGCTCAGCTTCCACA
ACGCCGGGCTATCAGACGCCACCGTGGACAGCCTAGTCGAAGGACTGCCA
CACACGACCGTCCGCTGCCTGTGCTTGGACTACAACCAACCATTGACGTT
GCCGTTTTCAACACAACATGCATCAAATGGGTCGGAGGGTGGCTCGCTCG
ACGAAGAAGACGGAAATAATCCGTCGGCATCTACCTTATCCTCGAGAAAT
TTACCAGGGCTCGTCTGTGAAGCCTCCAAGCTTCGGCAGCTGCAGCTGAG
AGGTAACGGTATCGACGACGCCGAAGCTGTGGCGCTTGCGGAGGCCATCG
AGGGGAATGATGTCCTCTGCTCGCTGAATCTCTTCGGTAACAAGATCTCG
GACGTCGGCCTCCAAGCTTCGGCAGCTGCAGCTGAGAGGTAACGGTATCG
ACGACGCCGAAGCTGTGGCGCTTGCGGAGGCCATCGAGGGGAATGATGTC
CTCTGCTCGCTGAATCTCTTCGGTAACAAGATCTCGGACGTCGGTGCTGC
CGCGTTCGCGAAAAGCTTGAGGCTGAACAGCGTCCTGCGGGCCCTTTCTC
TGGCGAATAACCGCCTGACGTCGGCCTCGGCCGAAGCCTTTGGCCTTCTG
CTGGCGGGGGGCTACGAGGTCCTCCCCGCGGAGCTCGAGAAGCGAGCGGA
AGTGGAGGCAATCATCACAGCGCAGAATAAGGCTGCAGCCCAGGAGAAGA
AGAAAAAGAAGCCCCTCATTAACGCGGAGACGCGGCTACCGCTGAGCATC
GTGACTTGGGACAGTGATAAGAGGGCCATCGCCGGCGGGAGTAAAAGCTT
AGCAGCGCTTAACTTATCCGAGAATCCAGAGCTCGGCGCCGGGGGCGCGC
TGGTCAAGCTCCTCGAGAAGATTGCCGAAGCGAGGAATAGTGATGAGGAG
GAGGGGAAGTCAGGACAGGACGGCACCCCGGGCGAAGCGGTCGCGCTGCA
GGAGCTTCACGTCGCGCGCTGCAGGGTGTTTGCTGAAGATGACGAAGGGC
AGACGGCATCAGTCGCGGCGGCTGCCGACGCGCTGAAGCCTACTGTTGTG
ACTTTGTGATGCTGCCGCGTTCGCGAAAAGCTTGAGGCTGAACAGCGTCC
TGCGGGCCCTTTCTCTGGCGAATAACCGCCTGACGTCGGCCTCGGCCGAA
GCCTTTGGCCTTCTGCTGGCGGGGGGCTACGAGGTCCTCCCCGCGGAGCT
CGAGAAGCGAGCGGAAGTGGAGGCAATCATCACAGCGCAGAATAAGGCTG
CAGCCCAGGAGAAGAAGAAAAAGAAGCCCCTCATTAACGCGGAGACGCGG
CTACCGCTGAGCATCGTGACTTGGGACAGTGATAAGAGGGCCATCGCCGG
CGGGAGTAAAAGCTTAGCAGCGCTTAACTTATCCGAGAATCCAGAGCTCG
GCGCCGGGGGCGCGCTGGTCAAGCTCCTCGAGAAGATTGCCGAAGCGAGG
AATAGTGATGAGGAGGAGGGGAAGTCAGGACAGGACGGCACCCCGGGCGA
AGCGGTCGCGCTGCAGGAGCTTCACGTCGCGCGCTGCAGGGTGTTTGCTG
AAGATGACGAAGGGCAGACGGCATCAGTCGCGGCGGCTGCCGACGCGCTG
AAGCCTACTGTTGTGACTTTGTGA
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