mRNA_H-elongata_contig160500.3878.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160500.3878.1
Unique NamemRNA_H-elongata_contig160500.3878.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.310e-27
Identity = 73/164 (44.51%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 MAVDGKHVVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTETHNASN------KHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +A  G++ +G   + V+ I    GCDVIGLQETRR+G  +    GY +  SG   G K+  K+G  GVG+AI+     S+  + R  E IS RL+KV L++ GR   +TFLV YAPTET   +       K +FWT+LD A+ +V   + L VLMDANARTG R
Sbjct:  185 LAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 345          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.590e-27
Identity = 72/164 (43.90%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    1 MAVDGKHVVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +A  G++ +G   + V+ I    GCDVIGLQETRR G  +    GY +  SG   G K+  K+G  GVG+AI+     S+  + R  E I  RL+KV L + GR   ITF+V YAPTET       + + K +FWT+LD  + +V  H+ L VLMDANARTG R
Sbjct:  158 LAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRR 318          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.400e-27
Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 1
Query:    1 MAVDGKHVVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +A  G++ +G   + V+ I    GCDVIGLQETRR G  +    GY +  SG   G K+  K+G  GVG+AI+     S+  + R  E IS RL+KV L++ GR   +TF+V YAPTET       + + K +FWT+LD A+ +V   + L VLM ANARTG R
Sbjct:   19 LAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRR 179          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.760e-27
Identity = 72/164 (43.90%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    1 MAVDGKHVVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +A  G++ +G   + V+ I    GCDVIGLQETRR+G  +    GY +  SG   G K+  K+G  GVG+AI+     S+  + R  E IS RL+KV L++ GR   +TF+V YAPTET       + + K +FWT+LD A+ +V   + L VLMDANARTG R
Sbjct:   96 LAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 256          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 8.060e-27
Identity = 72/164 (43.90%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 MAVDGKHVVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +A  G++ +G   + V+ I    GCDVIGLQETRR G  +    GY +  SG   G K+  K+G  GVG+AI+     S+  + R  E IS RL+KV L++ GR   +TF+V YAPTET       + + K +FWT+LD A+ +V   + L VLMDANARTG R
Sbjct:  667 LAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 827          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.470e-26
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 MAVDGKHVVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRTS----ITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +   G++ +G   + V+ I    GCDVIGLQETRR G  +    GY +  SG   G K+  K+G+ GVG+AI+ +    +  + R  E IS RL+KV L++ GR   +TF+V YAPTET       + + K +FWT+LD A+ +V   + L VLMDANARTG R
Sbjct:  165 LVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 325          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.900e-26
Identity = 69/151 (45.70%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   37 LDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            + V+ I    GCDVIGLQETRR G  +    GY +  SG   G K+  K+G  GVG+AI+     S+  + R  E IS RL+KV L++ GR   +TF+V YAPTET       + + K +FWT+LD A+ +V   + L VLMDANARTG R
Sbjct:    1 MTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.700e-26
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    1 MAVDGKHVVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSGECGEKNCGKKGQGGVGLAIRTSITRDAR-PPEFISDRLLKVILELQGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +AV G +  GRA  VL+   R    V+G+QETRR+G + F  AG+ V+C   CG +  G  G   VG+A++ S+ + +    EFI +RL+ + L L G   A+ F+ A APTE   AS+K  FW  LD  V ++P  E ++VL+DANARTG R
Sbjct:   68 LAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHG---VGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDR 214          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.500e-25
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    1 MAVDGKHVVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            +A  G++ +G   + V+ I    GCDVIGLQETRR+G  +    GY +  SG   G K+  K+G  GVG+ I+     S+  + R  E I  RL+KV L++ GR   + F+V YAPTET       + + K +FWT+LD A+ +V   + L VLMDANARTG R
Sbjct:   91 LACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQI-GRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 251          
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.750e-25
Identity = 69/151 (45.70%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   37 LDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCSG-ECGEKNCGKKGQGGVGLAIRT----SITRDARPPEFISDRLLKVILELQGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTGMR 456
            + V+ I    GCDVIGLQETRR G  +    GY +  SG   G K+  K+G  GVG+AI+     S+  + R  E IS RL+KV L++ GR   +TF+V YAPTET       + + K +FWT+LD A+ +V   + L VLMDANARTG R
Sbjct:    1 MTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160500.3878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3Q1_9PHAE1.310e-2744.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L660_9PHAE1.590e-2743.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZE6_9PHAE2.400e-2743.29Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JMB4_9PHAE3.760e-2743.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE8.060e-2743.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE1.470e-2642.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBZ6_9PHAE1.900e-2645.70Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JBD7_9PHAE3.700e-2642.48Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KV75_9PHAE1.500e-2542.07Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE1.750e-2545.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160500contigH-elongata_contig160500:651..1109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.0
Seed ortholog evalue8.4e-12
Seed eggNOG ortholog7668.SPU_010878-tr
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.939523-CDS-H-elongata_contig160500:650..11091622929941.939523-CDS-H-elongata_contig160500:650..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160500 651..1109 -
1691679216.8892956-CDS-H-elongata_contig160500:650..11091691679216.8892956-CDS-H-elongata_contig160500:650..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160500 651..1109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160500.3878.1prot_H-elongata_contig160500.3878.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160500 651..1109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160500.3878.1

>prot_H-elongata_contig160500.3878.1 ID=prot_H-elongata_contig160500.3878.1|Name=mRNA_H-elongata_contig160500.3878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MAVDGKHVVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVYCS
GECGEKNCGKKGQGGVGLAIRTSITRDARPPEFISDRLLKVILELQGRAK
AITFLVAYAPTETHNASNKHAFWTSLDRAVEKVPRHEQLFVLMDANARTG
MRE
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mRNA from alignment at H-elongata_contig160500:651..1109-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160500.3878.1 ID=mRNA_H-elongata_contig160500.3878.1|Name=mRNA_H-elongata_contig160500.3878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig160500:651..1109- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGATGGGAAGCACGTAGTTGGACGGGCGCTAGATGTGTTGAA TATATACGACCGACTGGGATGCGACGTTATCGGTTTGCAGGAGACCCGAC GCAGTGGGCATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTGCAGT GGTGAGTGCGGCGAGAAAAATTGTGGGAAGAAAGGGCAAGGTGGAGTAGG GCTAGCTATTAGAACCTCCATCACACGTGATGCACGCCCACCGGAGTTTA TCAGTGATCGCTTGCTAAAGGTTATACTTGAACTACAGGGTCGAGCCAAG GCCATTACGTTTCTTGTGGCGTATGCCCCCACTGAAACACATAATGCTAG TAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGAAGGTCC CTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGCACGGGG ATGAGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig160500:651..1109-

>mRNA_H-elongata_contig160500.3878.1 ID=mRNA_H-elongata_contig160500.3878.1|Name=mRNA_H-elongata_contig160500.3878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig160500:651..1109- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGATGGGAAGCACGTAGTTGGACGGGCGCTAGATGTGTTGAA
TATATACGACCGACTGGGATGCGACGTTATCGGTTTGCAGGAGACCCGAC
GCAGTGGGCATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTGCAGT
GGTGAGTGCGGCGAGAAAAATTGTGGGAAGAAAGGGCAAGGTGGAGTAGG
GCTAGCTATTAGAACCTCCATCACACGTGATGCACGCCCACCGGAGTTTA
TCAGTGATCGCTTGCTAAAGGTTATACTTGAACTACAGGGTCGAGCCAAG
GCCATTACGTTTCTTGTGGCGTATGCCCCCACTGAAACACATAATGCTAG
TAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGAAGGTCC
CTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGCACGGGG
ATGAGGGAGATGGCGGTGGATGGGAAGCACGTAGTTGGACGGGCGCTAGA
TGTGTTGAATATATACGACCGACTGGGATGCGACGTTATCGGTTTGCAGG
AGACCCGACGCAGTGGGCATTCAGCCTTCAATCAGGCTGGCTACTCGGTG
TACTGCAGTGGTGAGTGCGGCGAGAAAAATTGTGGGAAGAAAGGGCAAGG
TGGAGTAGGGCTAGCTATTAGAACCTCCATCACACGTGATGCACGCCCAC
CGGAGTTTATCAGTGATCGCTTGCTAAAGGTTATACTTGAACTACAGGGT
CGAGCCAAGGCCATTACGTTTCTTGTGGCGTATGCCCCCACTGAAACACA
TAATGCTAGTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGG
AGAAGGTCCCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCC
CGCACGGGGATGAGGGAG
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