mRNA_H-elongata_contig160492.3877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160492.3877.1
Unique NamemRNA_H-elongata_contig160492.3877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A835YJT4_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.390e-26
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP +N+ YV+NELSSTVSV+E+N   A  LE G    TLR VQ++STIPSAFPRKLNTCGRIC+DP+GR V
Sbjct:  438 FHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHV 509          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A835YI21_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI21_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.930e-25
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP +N+ YV+NELSSTVSV+E+N   A  LE G    TLR VQS+STIPSAFP  LNTCGRIC+DP+GR+V
Sbjct:  237 FHPTLNTVYVINELSSTVSVFEFNATIAETLEAGSSKSTLRLVQSISTIPSAFPGTLNTCGRICIDPSGRYV 308          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A0G4I6E3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I6E3_9ALVE)

HSP 1 Score: 99.0 bits (245), Expect = 1.400e-22
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTG 207
            FHP +N+ YVVNELSSTVSV+E+++ AA  L  G ++ TLRF+Q++STIP+A+PRK NTCGRI VDP G
Sbjct:  237 FHPTMNTVYVVNELSSTVSVFEFDMAAADSLTEGSNVQTLRFIQNISTIPTAYPRKSNTCGRIAVDPKG 305          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A8J2APN0_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2APN0_9DINO)

HSP 1 Score: 88.6 bits (218), Expect = 6.680e-19
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVY---EYNVQAA--RGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP+++  YVVNEL+STV V+   EY VQ A  +   + +   TL  +Q +ST+P AFP+ LNTCGRICVDPTGRWV
Sbjct:  338 FHPSLDVCYVVNELASTVQVFRFDEYRVQEALEKSYRKQECPATLERIQEISTLPEAFPKNLNTCGRICVDPTGRWV 414          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A7S3RFJ9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RFJ9_9SPIT)

HSP 1 Score: 83.2 bits (204), Expect = 9.310e-19
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP +   YVVNELSS VSV+ ++  AA+ +  G  +PTLR VQ+V T+P A+P  +NTCGRICV  +GR+V
Sbjct:   26 FHPTLPFCYVVNELSSEVSVFAFSHAAAQDVMAGASLPTLRLVQTVKTVPEAWPGDMNTCGRICVHGSGRFV 97          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A7S3YTS1_9EUKA (Hypothetical protein n=4 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YTS1_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 1.130e-18
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FH  +N AY++NE+S TV+V++++  A   +E G+  P+L  +QS+ST+P  FP   NTCGRICVDPTGR+V
Sbjct:  297 FHRELNVAYLINEMSCTVAVFKFDPSAIEKIEAGESFPSLTQIQSISTVPEGFPSMYNTCGRICVDPTGRFV 368          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A9VB49_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VB49_MONBE)

HSP 1 Score: 87.0 bits (214), Expect = 1.700e-18
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDH--MPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP +N  YVVNELSSTVSV++Y+ +AA  L       +  L F QS+ T+P AFPR LNTCGRIC+DP+G++V
Sbjct:  242 FHPELNIMYVVNELSSTVSVFDYDREAAAQLAANPSADVTILTFKQSIPTVPEAFPRSLNTCGRICLDPSGQYV 315          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: F2U7G7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7G7_SALR5)

HSP 1 Score: 84.3 bits (207), Expect = 1.530e-17
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP +  AYVVNELSSTV+V+ +N++ A  +      PTL  +Q++STIPSAFPR LNTCGRI V   G +V
Sbjct:  231 FHPKLPVAYVVNELSSTVAVFSFNIEQAARIAEEPEKPTLTLLQTISTIPSAFPRHLNTCGRITVTNAGTFV 302          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A6S8SF55_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8SF55_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.360e-16
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYEYNVQAARG----------LERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP  N+ YVVNELSSTV+V+  N    R           LE+   + TL  +QS++TIPSAFP+K+NTCGR+C+  +GR+V
Sbjct:  267 FHPKYNTMYVVNELSSTVAVFSVNKDLIRAINTAATNGESLEKFKGLSTLTLIQSINTIPSAFPKKMNTCGRLCLHKSGRYV 348          
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Match: A0A7S1ZIT2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZIT2_TRICV)

HSP 1 Score: 82.0 bits (201), Expect = 1.400e-16
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 FHPAVNSAYVVNELSSTVSVYE------YNVQAA----RGLERGDHMPTLRFVQSVSTIPSAFPRKLNTCGRICVDPTGRWV 216
            FHP+ N AYVVNELSST++V+       Y V  A      +ER     TLR +QS+ TIP+AFP K+NTCGRICV  +GR+V
Sbjct:  295 FHPSYNVAYVVNELSSTIAVFSVDRELLYEVDRAAKNNENMERFKGRSTLRLIQSIRTIPTAFPTKMNTCGRICVHKSGRFV 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160492.3877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJT4_9STRA8.390e-2668.06Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A835YI21_9STRA2.930e-2566.67Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A0G4I6E3_9ALVE1.400e-2263.77Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J2APN0_9DINO6.680e-1955.84Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S3RFJ9_9SPIT9.310e-1954.17Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S3YTS1_9EUKA1.130e-1851.39Hypothetical protein n=4 Tax=Lotharella globosa Ta... [more]
A9VB49_MONBE1.700e-1856.76Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F2U7G7_SALR51.530e-1755.56Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A6S8SF55_9STRA1.360e-1648.78Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1ZIT2_TRICV1.400e-1652.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160492contigH-elongata_contig160492:105..320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score86.7
Seed ortholog evalue5e-15
Seed eggNOG ortholog81824.XP_001749951.1
EggNOG free text desc.Lactonase, 7-bladed beta-propeller
EggNOG OGs29K1N@1,2RTAI@2759,3A8RG@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLactonase, 6-Phosphogluconolactonase
Ec32 orthologEc-13_002400.1
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.8878536-CDS-H-elongata_contig160492:104..3201622929941.8878536-CDS-H-elongata_contig160492:104..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160492 105..320 -
1691679216.8661087-CDS-H-elongata_contig160492:104..3201691679216.8661087-CDS-H-elongata_contig160492:104..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160492 105..320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160492.3877.1prot_H-elongata_contig160492.3877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160492 105..320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160492.3877.1

>prot_H-elongata_contig160492.3877.1 ID=prot_H-elongata_contig160492.3877.1|Name=mRNA_H-elongata_contig160492.3877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
FHPAVNSAYVVNELSSTVSVYEYNVQAARGLERGDHMPTLRFVQSVSTIP
SAFPRKLNTCGRICVDPTGRWV
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mRNA from alignment at H-elongata_contig160492:105..320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160492.3877.1 ID=mRNA_H-elongata_contig160492.3877.1|Name=mRNA_H-elongata_contig160492.3877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig160492:105..320- (Himanthalia elongata Himel1 dioecious)
TTCCACCCCGCCGTGAACTCCGCGTACGTGGTGAACGAGCTGTCTTCCAC GGTTAGCGTGTACGAGTACAACGTACAGGCAGCCAGGGGCCTCGAGAGGG GAGATCACATGCCCACCCTGCGTTTCGTCCAATCGGTCAGCACCATCCCA TCGGCGTTCCCTCGGAAGCTTAATACCTGCGGGCGCATTTGCGTGGACCC CACCGGAAGGTGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig160492:105..320-

>mRNA_H-elongata_contig160492.3877.1 ID=mRNA_H-elongata_contig160492.3877.1|Name=mRNA_H-elongata_contig160492.3877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig160492:105..320- (Himanthalia elongata Himel1 dioecious)
TTCCACCCCGCCGTGAACTCCGCGTACGTGGTGAACGAGCTGTCTTCCAC
GGTTAGCGTGTACGAGTACAACGTACAGGCAGCCAGGGGCCTCGAGAGGG
GAGATCACATGCCCACCCTGCGTTTCGTCCAATCGGTCAGCACCATCCCA
TCGGCGTTCCCTCGGAAGCTTAATACCTGCGGGCGCATTTGCGTGGACCC
CACCGGAAGGTGGGTGTTCCACCCCGCCGTGAACTCCGCGTACGTGGTGA
ACGAGCTGTCTTCCACGGTTAGCGTGTACGAGTACAACGTACAGGCAGCC
AGGGGCCTCGAGAGGGGAGATCACATGCCCACCCTGCGTTTCGTCCAATC
GGTCAGCACCATCCCATCGGCGTTCCCTCGGAAGCTTAATACCTGCGGGC
GCATTTGCGTGGACCCCACCGGAAGGTGGGTG
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