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Homology
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: D8LK15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK15_ECTSI) HSP 1 Score: 248 bits (633), Expect = 3.400e-74 Identity = 154/308 (50.00%), Postives = 188/308 (61.04%), Query Frame = 1
Query: 193 SVEEIVLKEAEALRAGRDKSQRFMSVNTSVKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTPIQVTSFSEIELFKAAAQPVVISALPPVAESISPLTSNVAAEAHDSSQKTRNSAGGKEGYGAVLLTEESETPKESSSSGICEKMLQTTTGAASKGSERGAGSGEKGVSVSLGESPDRGAPRSGVLCKQQVVATGERERAERGSAADGGASTKTSDKRWKFRVDVRKRNSGLKRMDLINAVATSVGEGHSVSMASPDVTIVVEAIKSVVGASVLFNYVLNHEYSMSRLQDAVCGNIIE 1116
SVEE+V +EA+ALR+G DK RF SVNTSVKGV+MVCV+DP +D+L LVD ++ EIRT+ RRSRFLERVTP+QVT++SE++ K A P+V ALPPVAE + PL + V A G + G + E TP SSG K +T K E A S G + VV+ G + KT DKRWKFR D+R+RNSGLKR+DLINA SVG GHSV+M SP+VTIVVEA+KSVVG SVLFNY NHEYS+SRLQDAVCG I++
Sbjct: 135 SVEEMVKQEADALRSGSDKVHRFKSVNTSVKGVVMVCVVDPKVDILRLVDTLYDEIRTTKMRRSRFLERVTPLQVTAYSELDAIKEAVGPIVSKALPPVAEEVPPLPTAVRAS-------------GAKATGPAAVKTEKGTPAPKDSSGDKVKAAETEE----KEGEGAAASAPNGTGDXXXXXXXXXXXXXXXXXEGDVVSDGNEK--------------KTCDKRWKFRADIRRRNSGLKRLDLINAAVGSVGVGHSVNMTSPEVTIVVEAVKSVVGVSVLFNYARNHEYSISRLQDAVCGAILD 411
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: A0A835Z5R2_9STRA (THUMP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R2_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.320e-5 Identity = 25/74 (33.78%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 280 VKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTPIQVTSFSEIELFKAAAQPVVISALPPVAESI 501
++GV++VCV+D T+D++ + +F+++R + RRSRFL R P+ T + + E A+P+V A + E +
Sbjct: 1 LRGVVVVCVLDKTLDIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPV 74
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: A0A1V9Z6J2_9STRA (THUMP domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6J2_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 5.340e-5 Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 220 AEALRAGRDKSQRFMSVNTSVKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTPIQVTSFSEIELFKAAAQP 462
AE ++ + RF++++T VKG+IM+ ++D + V+ LVD IF E+ + + SRF++R+ P++ F +E A P
Sbjct: 86 AEEIKGLKKDKGRFVALDTGVKGIIMIQIVDRKIPVIALVDRIFEEVVDTKQFSSRFIQRLIPLENLCFPSVEDITTAVTP 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_007810.1 |
| Exons | 2 |
| Model size | 1400 |
| Cds size | 1014 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929941.6564746-UTR-H-elongata_contig16036:138..246 | 1622929941.6564746-UTR-H-elongata_contig16036:138..246 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16036 139..246 + |
| 1691679216.770304-UTR-H-elongata_contig16036:138..246 | 1691679216.770304-UTR-H-elongata_contig16036:138..246 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16036 139..246 + |
| 1622929941.7100055-UTR-H-elongata_contig16036:1496..1774 | 1622929941.7100055-UTR-H-elongata_contig16036:1496..1774 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16036 1497..1774 + |
| 1691679216.8033342-UTR-H-elongata_contig16036:1496..1774 | 1691679216.8033342-UTR-H-elongata_contig16036:1496..1774 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16036 1497..1774 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929941.671375-CDS-H-elongata_contig16036:246..1131 | 1622929941.671375-CDS-H-elongata_contig16036:246..1131 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16036 247..1131 + |
| 1691679216.780649-CDS-H-elongata_contig16036:246..1131 | 1691679216.780649-CDS-H-elongata_contig16036:246..1131 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16036 247..1131 + |
| 1622929941.6923666-CDS-H-elongata_contig16036:1367..1496 | 1622929941.6923666-CDS-H-elongata_contig16036:1367..1496 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16036 1368..1496 + |
| 1691679216.791805-CDS-H-elongata_contig16036:1367..1496 | 1691679216.791805-CDS-H-elongata_contig16036:1367..1496 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16036 1368..1496 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16036.3874.1 >prot_H-elongata_contig16036.3874.1 ID=prot_H-elongata_contig16036.3874.1|Name=mRNA_H-elongata_contig16036.3874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=338bp
MINSGSVVAAEKLISVTQPSEEAKPPLPSVEEIVLKEAEALRAGRDKSQR
FMSVNTSVKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTP
IQVTSFSEIELFKAAAQPVVISALPPVAESISPLTSNVAAEAHDSSQKTR
NSAGGKEGYGAVLLTEESETPKESSSSGICEKMLQTTTGAASKGSERGAG
SGEKGVSVSLGESPDRGAPRSGVLCKQQVVATGERERAERGSAADGGAST
KTSDKRWKFRVDVRKRNSGLKRMDLINAVATSVGEGHSVSMASPDVTIVV
EAIKSVVGASVLFNYVLNHEYSMSRLQDAVCGNIIED* back to topmRNA from alignment at H-elongata_contig16036:139..1774+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig16036.3874.1 ID=mRNA_H-elongata_contig16036.3874.1|Name=mRNA_H-elongata_contig16036.3874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1636bp|location=Sequence derived from alignment at H-elongata_contig16036:139..1774+ (Himanthalia elongata Himel1 dioecious)
GACGACCTACTCGTACATCATCAGGAGGGTGGTGACGCTCAAGGTGTGTC
ACCCAACAAATCGTCCAATGGACATGATCGACCAAGCAGAGCCTTTGATG
GCGCCTCCATGATAAATTCAGGGTCGGTGGTGGCTGCCGAGAAACTAATC
TCTGTGACACAGCCATCAGAAGAAGCAAAGCCACCATTACCGTCAGTTGA
GGAAATAGTGCTCAAAGAGGCAGAAGCGCTGCGCGCTGGTCGAGACAAGT
CCCAGCGCTTTATGTCCGTCAACACGTCGGTGAAAGGTGTGATCATGGTG
TGCGTGATGGACCCGACGATGGACGTCCTAGGGTTGGTTGACGCAATATT
CGCCGAAATACGGACATCAGGTAAGCGCCGGAGCCGTTTCTTGGAGCGGG
TTACCCCGATTCAGGTCACTTCGTTCTCCGAGATCGAGCTGTTCAAGGCC
GCGGCGCAGCCCGTTGTCATCTCCGCGCTCCCGCCGGTCGCGGAGAGCAT
TTCACCATTGACATCCAACGTCGCAGCTGAGGCACATGACTCTAGCCAAA
AGACGCGAAATTCAGCCGGCGGCAAGGAAGGATATGGTGCTGTGCTATTG
ACAGAGGAGTCAGAGACCCCGAAGGAATCGTCGAGCTCTGGTATTTGTGA
GAAGATGCTTCAAACAACCACGGGCGCCGCGAGTAAAGGAAGCGAAAGAG
GTGCCGGCAGCGGTGAGAAGGGGGTTTCTGTAAGCTTAGGAGAGTCGCCC
GATCGTGGGGCACCTCGTAGCGGCGTACTTTGCAAGCAACAAGTGGTTGC
TACAGGGGAGAGAGAGAGAGCTGAAAGAGGGTCCGCAGCCGACGGTGGGG
CTAGCACAAAGACGAGCGATAAGCGGTGGAAGTTTCGGGTTGACGTGAGG
AAGAGGAATTCCGGACTCAAGAGGATGGATCTCATCAATGCTGTGGCGAC
GTCTGTTGGCGAAGGCCATTCGGTTAGCATGGCCTCTCCAGATGTGAGTG
TCACAATATTTTACCAAAAACGGTACGGTATGTTCTTATCGTCCTGTTGT
TTTTGTTACTTCATCAAACCAACATTGTAGACTCCCCTTGAGTCTCAGGG
TTACGGGAGACGGATTTGATCGCGCTTTCGCTACCGGTATCCTTTGCAGT
CGCTCCAACATAGAACCTCAGACGCGTCGTACATGGCTTGTCGAATCCCC
TTCCCTTTACGTGATGTCCACTACCGCAGGTCACGATCGTGGTAGAAGCC
ATCAAGTCGGTCGTGGGCGCGAGCGTGTTGTTCAACTATGTTTTGAACCA
CGAGTACAGCATGAGCCGCCTGCAAGACGCTGTGTGCGGAAATATTATCG
AGGATTGATCATCAAGATCGTTGTGACAAGTCTCCGCGGTGGTCGCTGCC
CTAAAGGGATCCAGGCCGTTTTTACGAGGTCGTGAAAGTTGCAACCGTAA
GGTGTCCTGATCGGTGATAACAATGCGCGTGTACCACTGTGCCGATGCAC
CTAGATCCTGTAGTAACGCAAGTGGTATTTCCCGTGTGAGATGATATGTC
GCTTCACGAACCACCGAAGATGCCACCACGGCGGGGGGGCGTTTTTCTTT
CAATGTTACCCTCATCACCATGTAATTCGATGGCCT back to topCoding sequence (CDS) from alignment at H-elongata_contig16036:139..1774+ >mRNA_H-elongata_contig16036.3874.1 ID=mRNA_H-elongata_contig16036.3874.1|Name=mRNA_H-elongata_contig16036.3874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2028bp|location=Sequence derived from alignment at H-elongata_contig16036:139..1774+ (Himanthalia elongata Himel1 dioecious)
ATGATAAATTCAGGGTCGGTGGTGGCTGCCGAGAAACTAATCTCTGTGAC
ACAGCCATCAGAAGAAGCAAAGCCACCATTACCGTCAGTTGAGGAAATAG
TGCTCAAAGAGGCAGAAGCGCTGCGCGCTGGTCGAGACAAGTCCCAGCGC
TTTATGTCCGTCAACACGTCGGTGAAAGGTGTGATCATGGTGTGCGTGAT
GGACCCGACGATGGACGTCCTAGGGTTGGTTGACGCAATATTCGCCGAAA
TACGGACATCAGGTAAGCGCCGGAGCCGTTTCTTGGAGCGGGTTACCCCG
ATTCAGGTCACTTCGTTCTCCGAGATCGAGCTGTTCAAGGCCGCGGCGCA
GCCCGTTGTCATCTCCGCGCTCCCGCCGGTCGCGGAGAGCATTTCACCAT
TGACATCCAACGTCGCAGCTGAGGCACATGACTCTAGCCAAAAGACGCGA
AATTCAGCCGGCGGCAAGGAAGGATATGGTGCTGTGCTATTGACAGAGGA
GTCAGAGACCCCGAAGGAATCGTCGAGCTCTGGTATTTGTGAGAAGATGC
TTCAAACAACCACGGGCGCCGCGAGTAAAGGAAGCGAAAGAGGTGCCGGC
AGCGGTGAGAAGGGGGTTTCTGTAAGCTTAGGAGAGTCGCCCGATCGTGG
GGCACCTCGTAGCGGCGTACTTTGCAAGCAACAAGTGGTTGCTACAGGGG
AGAGAGAGAGAGCTGAAAGAGGGTCCGCAGCCGACGGTGGGGCTAGCACA
AAGACGAGCGATAAGCGGTGGAAGTTTCGGGTTGACGTGAGGAAGAGGAA
TTCCGGACTCAAGAGGATGGATCTCATCAATGCTGTGGCGACGTCTGTTG
GCGAAGGCCATTCGGTTAGCATGGCCTCTCCAGATATGATAAATTCAGGG
TCGGTGGTGGCTGCCGAGAAACTAATCTCTGTGACACAGCCATCAGAAGA
AGCAAAGCCACCATTACCGTCAGTTGAGGAAATAGTGCTCAAAGAGGCAG
AAGCGCTGCGCGCTGGTCGAGACAAGTCCCAGCGCTTTATGTCCGTCAAC
ACGTCGGTGAAAGGTGTGATCATGGTGTGCGTGATGGACCCGACGATGGA
CGTCCTAGGGTTGGTTGACGCAATATTCGCCGAAATACGGACATCAGGTA
AGCGCCGGAGCCGTTTCTTGGAGCGGGTTACCCCGATTCAGGTCACTTCG
TTCTCCGAGATCGAGCTGTTCAAGGCCGCGGCGCAGCCCGTTGTCATCTC
CGCGCTCCCGCCGGTCGCGGAGAGCATTTCACCATTGACATCCAACGTCG
CAGCTGAGGCACATGACTCTAGCCAAAAGACGCGAAATTCAGCCGGCGGC
AAGGAAGGATATGGTGCTGTGCTATTGACAGAGGAGTCAGAGACCCCGAA
GGAATCGTCGAGCTCTGGTATTTGTGAGAAGATGCTTCAAACAACCACGG
GCGCCGCGAGTAAAGGAAGCGAAAGAGGTGCCGGCAGCGGTGAGAAGGGG
GTTTCTGTAAGCTTAGGAGAGTCGCCCGATCGTGGGGCACCTCGTAGCGG
CGTACTTTGCAAGCAACAAGTGGTTGCTACAGGGGAGAGAGAGAGAGCTG
AAAGAGGGTCCGCAGCCGACGGTGGGGCTAGCACAAAGACGAGCGATAAG
CGGTGGAAGTTTCGGGTTGACGTGAGGAAGAGGAATTCCGGACTCAAGAG
GATGGATCTCATCAATGCTGTGGCGACGTCTGTTGGCGAAGGCCATTCGG
TTAGCATGGCCTCTCCAGATGTCACGATCGTGGTAGAAGCCATCAAGTCG
GTCGTGGGCGCGAGCGTGTTGTTCAACTATGTTTTGAACCACGAGTACAG
CATGAGCCGCCTGCAAGACGCTGTGTGCGGAAATATTATCGAGGATTGAG
TCACGATCGTGGTAGAAGCCATCAAGTCGGTCGTGGGCGCGAGCGTGTTG
TTCAACTATGTTTTGAACCACGAGTACAGCATGAGCCGCCTGCAAGACGC
TGTGTGCGGAAATATTATCGAGGATTGA back to top
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