|
|
Homology
BLAST of mRNA_H-elongata_contig16029.3871.1 vs. uniprot
Match: D8LI54_ECTSI (USP domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI54_ECTSI) HSP 1 Score: 394 bits (1013), Expect = 9.770e-109 Identity = 316/765 (41.31%), Postives = 388/765 (50.72%), Query Frame = 3
Query: 261 EDKLVVLGERGSSKVYTVFVEEVWEG--EGECEKESG-SLAVQVALDQLNRMSLKLLLTGGLEGPDSIRVDKRWTLDQLRDAIAAATRRDSRSFQLRM-QANGSEIRPGPETLRSQGILNIFNLHVSPGRPLERNEEAIVIAPLEVGFAAGLRASPPPSVVKALAGGRAASRFLPPPQEXXXXXXXXXXPSSASNRQGEEATAAERGALGD-----------------------------------PSGNGGGIAGERREGFFSGKQDSDFRNVDIEIGLTSTKDCAPAATLAAASFSFGLPRGYTSCAVDSSGSGGVTCSMLGEAVAAGEFCA------DAVGNIGGSGGGPATAPLSSATGAKINDYASSAS---VRPDSGPAAAEPGPHASAVWAAAXXXXXXXXKLAKAEAERLTTTAVEFPPTESSWGDQFTIAVKHDSTVADIRLAVWQEMRRRGL-------VAGPPDGSRKKAEGDRPGTEPEASLG------CSPAALRLREKRNAQPSTILHDSDGIPTRLKYPTEGTPWLLVAQALPVEENLGQPGVHVAAGSSCGGEDKKEKDLGLTAKVSWAGGRGGSCDELARFDAGDRNAAVAGVSLHIPPANAKVIVVQWWDRWEWRLTEKYEAWISPTETVAAVRKRFAEQVGVDPANIRANRCTSKTRLRLVDLRGASDANQSNSSSGCLGLGVASVESGGWNSTSSSSTMCRWGDLDASRGDYAVMTPSISEGDLVLLQDVSQPLKRLMATTEAAI 2372
E ++VVLG+RGS+ + ++VEEV EG G+ ++E G SLAV+VA DQ NR+++ L LTGG+EGP + DKRWT DQLR+AIA A +RSF+LR Q N EIRPGPETL +G N+ LHVSPGRPLE +EEA+ +AP++VGF GL +P SVV A+A GR +R G A E+ +GD P G G G+ GE D R + L T AAT S G T+ +V SS +G T + G A+ A E C +AV P + P SS+ A P S P WAAAXXXXXXXX+ AKAE E LT+T VE P ES WG+QF +AV DSTV DIR AVW EMRRRGL V D ++ + DR T S G +P ALRLRE+ P+TI+ D+DG TRL+ PWLLVAQ LP EE+LG+P G GG G + GS + PP +A+VIVVQWW+RWEWRLTEKYEAW+SPTETVA+ R+R AEQ GV+PAN+ ANRC RLRL DLRG + S G G +S G S S C W DL+ASRGD V +ISEG LVLLQD SQPLK+L TEA+I
Sbjct: 1198 ESEVVVLGDRGSNIILRIYVEEVPEGGDAGDGDEEEGVSLAVKVATDQPNRITVTLDLTGGIEGPGRMSADKRWTSDQLREAIAQAIGCPNRSFRLRKCQGNTPEIRPGPETLAKKGFYNLIKLHVSPGRPLELHEEAVTVAPVDVGFRVGLGPAPT-SVVLAIAAGRVRAR------SSSADSAAVKEEGGGQQELGYGAATTEKVGVGDCRSLKFPEVDAEIGPVAICDTTTAPPSADCSPTLGPVGEGRGVVGE-----------GDNRPTVVASDLLLTLRGVGAAT--GGGDSSGGSEAPTA-SVSSSETGQTTPTNRGIALLASEECKTTPTDREAVAPFA-----PPSPPRSSSAVAXXXXXXXXXXXXXAHPGSAAVGTGASPEGGVAWAAAXXXXXXXXQDAKAETEALTSTYVEVVPPESRWGEQFNVAVHRDSTVGDIRRAVWTEMRRRGLGPRGFSAVGAAADVGNEEEKDDRLPTPGAVSTGHPLEEGWTPGALRLRERHVKLPATIVRDADGKVTRLRSRPRDAPWLLVAQVLPREEDLGRPVFPQGGGG--GGXXXXXXXXGDSGH--------GSAETXXXXXXXXXXGGADAARDDCPPQDARVIVVQWWNRWEWRLTEKYEAWVSPTETVASARRRLAEQAGVNPANLLANRCAPNARLRLFDLRGTA----SERGDGSGGSPAPEKQSSGTWGGSFSHNKCHWSDLEASRGDQPVGGSAISEGSLVLLQDSSQPLKQLAPATEASI 1922
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 409.5 |
| Seed ortholog evalue | 5e-111 |
| Seed eggNOG ortholog | 2880.D8LI54 |
| Preferred name | USP47 |
| KEGG ko | ko:K11857 |
| GOs | GO:0000151,GO:0000578,GO:0001558,GO:0001654,GO:0001745,GO:0003002,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006355,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008595,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010389,GO:0010466,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0010972,GO:0016579,GO:0016787,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019904,GO:0023051,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030307,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031461,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034644,GO:0035282,GO:0035520,GO:0036211,GO:0036459,GO:0040008,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042675,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045861,GO:0045892,GO:0045927,GO:0045930,GO:0045934,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0060828,GO:0060968,GO:0061136,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071987,GO:0080090,GO:0080134,GO:0080135,GO:0090263,GO:0090304,GO:0090596,GO:0101005,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1901799,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902230,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902749,GO:1902750,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1990234,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000116,GO:2000117,GO:2001020,GO:2001021,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243 |
| EggNOG free text desc. | thiol-dependent ubiquitin-specific protease activity |
| EggNOG OGs | COG5077@1,KOG4598@2759 |
| EC | 3.4.19.12 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko01002,ko04121 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Peptidase C19, ubiquitin carboxyl-terminal hydrolase |
| Ec32 ortholog | Ec-26_005270.1 |
| Exons | 3 |
| Model size | 4797 |
| Cds size | 3213 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929941.1653955-UTR-H-elongata_contig16029:1865..1867 | 1622929941.1653955-UTR-H-elongata_contig16029:1865..1867 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16029 1866..1867 + |
| 1691679216.5553637-UTR-H-elongata_contig16029:1865..1867 | 1691679216.5553637-UTR-H-elongata_contig16029:1865..1867 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16029 1866..1867 + |
| 1622929941.2453191-UTR-H-elongata_contig16029:6131..7713 | 1622929941.2453191-UTR-H-elongata_contig16029:6131..7713 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16029 6132..7713 + |
| 1691679216.6075552-UTR-H-elongata_contig16029:6131..7713 | 1691679216.6075552-UTR-H-elongata_contig16029:6131..7713 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16029 6132..7713 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929941.1867857-CDS-H-elongata_contig16029:1867..2268 | 1622929941.1867857-CDS-H-elongata_contig16029:1867..2268 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16029 1868..2268 + |
| 1691679216.5668428-CDS-H-elongata_contig16029:1867..2268 | 1691679216.5668428-CDS-H-elongata_contig16029:1867..2268 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16029 1868..2268 + |
| 1622929941.2013373-CDS-H-elongata_contig16029:2976..4624 | 1622929941.2013373-CDS-H-elongata_contig16029:2976..4624 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16029 2977..4624 + |
| 1691679216.5840592-CDS-H-elongata_contig16029:2976..4624 | 1691679216.5840592-CDS-H-elongata_contig16029:2976..4624 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16029 2977..4624 + |
| 1622929941.2288804-CDS-H-elongata_contig16029:4967..6131 | 1622929941.2288804-CDS-H-elongata_contig16029:4967..6131 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16029 4968..6131 + |
| 1691679216.5978506-CDS-H-elongata_contig16029:4967..6131 | 1691679216.5978506-CDS-H-elongata_contig16029:4967..6131 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16029 4968..6131 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16029.3871.1 >prot_H-elongata_contig16029.3871.1 ID=prot_H-elongata_contig16029.3871.1|Name=mRNA_H-elongata_contig16029.3871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1071bp
MAQGESKEMDERPRAWARATGINVATEEAPMIGFTTAKALADSNARKAAA
PPKSEAGGDSRDADQPPRRTLGVNEKEGTRTDGGDDEDKLVVLGERGSSK
VYTVFVEEVWEGEGECEKESGSLAVQVALDQLNRMSLKLLLTGGLEGPDS
IRVDKRWTLDQLRDAIAAATRRDSRSFQLRMQANGSEIRPGPETLRSQGI
LNIFNLHVSPGRPLERNEEAIVIAPLEVGFAAGLRASPPPSVVKALAGGR
AASRFLPPPQEQEQEQEQEQHPSSASNRQGEEATAAERGALGDPSGNGGG
IAGERREGFFSGKQDSDFRNVDIEIGLTSTKDCAPAATLAAASFSFGLPR
GYTSCAVDSSGSGGVTCSMLGEAVAAGEFCADAVGNIGGSGGGPATAPLS
SATGAKINDYASSASVRPDSGPAAAEPGPHASAVWAAAAAAAATASKLAK
AEAERLTTTAVEFPPTESSWGDQFTIAVKHDSTVADIRLAVWQEMRRRGL
VAGPPDGSRKKAEGDRPGTEPEASLGCSPAALRLREKRNAQPSTILHDSD
GIPTRLKYPTEGTPWLLVAQALPVEENLGQPGVHVAAGSSCGGEDKKEKD
LGLTAKVSWAGGRGGSCDELARFDAGDRNAAVAGVSLHIPPANAKVIVVQ
WWDRWEWRLTEKYEAWISPTETVAAVRKRFAEQVGVDPANIRANRCTSKT
RLRLVDLRGASDANQSNSSSGCLGLGVASVESGGWNSTSSSSTMCRWGDL
DASRGDYAVMTPSISEGDLVLLQDVSQPLKRLMATTEAAIVSHAVDRAEV
CDMSSVGSWYSGKDESGGNGNGTTATTTTASASYSSSKPKERALVIRTRR
DRLQEGKMAAAAAAAAVATAASAAAATAAIVVAASVAVADTSAQGAVVDF
SVKGDPDANGGVSLRGGGGLGTSEGVETEAAPHLLSSIEGTGTVGSDGNG
HECPGLQGDHDDGGADISQEFTGGNGIGMAVGGDGGVVSSSPDRVRVCGR
GKIEGERFGQDSSGDQTEKDDVWGLELSEREAYADLSMGCVEDDAIAMHS
DAEVAEQGGRALFDDLALVE* back to topmRNA from alignment at H-elongata_contig16029:1866..7713+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig16029.3871.1 ID=mRNA_H-elongata_contig16029.3871.1|Name=mRNA_H-elongata_contig16029.3871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5848bp|location=Sequence derived from alignment at H-elongata_contig16029:1866..7713+ (Himanthalia elongata Himel1 dioecious)
CGATGGCGCAGGGGGAAAGTAAGGAGATGGACGAGCGGCCGAGGGCGTGG
GCGCGTGCTACTGGTATCAATGTAGCGACGGAGGAAGCTCCGATGATTGG
GTTCACGACAGCTAAAGCTCTCGCGGACTCGAATGCTAGGAAGGCCGCAG
CACCGCCGAAAAGTGAGGCTGGCGGGGATTCCCGGGATGCCGACCAGCCT
CCACGGAGAACTCTTGGAGTGAATGAGAAGGAGGGTACTAGAACCGATGG
TGGAGATGACGAGGACAAGCTCGTGGTGTTGGGGGAGCGGGGGAGCAGCA
AAGTGTACACGGTTTTCGTAGAGGAGGTCTGGGAAGGGGAAGGGGAATGC
GAGAAGGAAAGCGGAAGCCTCGCGGTGCAAGTCGCTCTGGATCAGCTCAA
CAGGTGCGTCGTTTTTGTTTTCCTTGTTGGATGCTTGCCGCCTCCCCCAC
CCTACTACATCTACCACGATGAATATAACATTTGACGGTTTTGGTCTCAA
AGGTAGCAATGTACACATTCGAATCTGGCGGTAGTTGGTCCCCTGGACTG
CACCTCTCACGGTGCTAAGAAGGCGTGGATGTTGGGAGGGTTGGAATGAA
TTAAACTTTTAATAATTACCTTGAACTGCATCAGGTTTAACAAAAGAGAT
GAAAATGGATTTACGCTCGAAAACGAGGACGTATTTGTTGAAGACCTTGC
GTGGCTGTTTCTCTTGCCGTCGGAGCAGAGGCAATGAGTCGGCGGAGTCA
TGATGTACAGGTGTCTATTAGGTGGTGGCTCAGCGCAGCGAGCGCGCCAT
ATCGCTTCATGCTGATTGGGGGGGGGGGGGGGGGGGCAGCGGGAAGGGGG
AGGACGCAATGGTGACCCGCACGCGTATAAAGCTCGATGTTTCGGTGNNN
NNNNNNNGAGTATTGGTGGGGGTGGGGGTGGGGGGGGGGGCGTGGGGGGG
GGAATGAAGGGCATTGATTGGTCGACCAGATTGACCGTTGAATTTGGCCG
ATATCACGCGCACCTGTACCGGCAGCCGTGCCTCATGTCCTCCCGTTTTG
TTTTGTTTTGTTTTGTTTTTTTGCTCTCCCCTTGATCTCGGGGGACGAAT
GAGGGCATCAGGATGTCACTCAAGCTGCTGCTAACGGGAGGCCTAGAGGG
CCCAGACAGCATCCGCGTGGACAAGCGCTGGACTTTGGACCAGCTCCGAG
ACGCCATCGCAGCGGCAACCCGGCGCGACAGTCGTTCCTTCCAGCTCCGG
ATGCAAGCGAACGGCTCGGAGATCAGGCCGGGCCCCGAGACCCTGAGAAG
TCAAGGGATTTTGAATATTTTCAACCTTCATGTGTCGCCCGGGCGGCCGC
TCGAGCGCAATGAAGAGGCGATCGTGATCGCGCCGCTGGAGGTAGGCTTC
GCGGCCGGCCTCCGCGCCTCCCCGCCACCGTCCGTAGTGAAGGCTCTCGC
CGGTGGAAGAGCCGCCAGCCGTTTTTTGCCGCCGCCTCAGGAGCAGGAGC
AGGAGCAGGAGCAGGAGCAGCATCCGTCTTCTGCAAGCAACAGGCAGGGA
GAAGAGGCGACTGCGGCTGAGCGTGGCGCGCTCGGCGACCCATCTGGAAA
TGGCGGAGGGATTGCCGGGGAGCGTCGGGAGGGATTTTTCTCTGGTAAAC
AAGACTCCGATTTCCGGAACGTTGACATAGAAATTGGCCTAACATCGACC
AAGGATTGTGCTCCTGCCGCCACCCTCGCTGCTGCCTCTTTTTCTTTTGG
CTTGCCAAGAGGTTACACATCTTGCGCGGTAGACTCGAGCGGAAGCGGCG
GCGTGACTTGCAGTATGCTAGGCGAAGCAGTAGCGGCGGGAGAATTTTGC
GCCGATGCTGTGGGAAATATTGGTGGCAGCGGTGGCGGTCCAGCTACAGC
CCCGTTGTCATCGGCGACGGGAGCAAAAATAAATGATTATGCTTCGTCCG
CATCGGTGCGACCGGACTCAGGCCCCGCTGCCGCCGAGCCGGGGCCTCAT
GCTTCCGCGGTCTGGGCCGCTGCAGCAGCGGCGGCCGCGACCGCCTCAAA
GCTCGCGAAGGCAGAAGCAGAGAGGCTCACCACCACCGCTGTCGAGTTCC
CCCCAACGGAGAGCAGCTGGGGCGATCAGTTCACCATTGCGGTGAAGCAC
GACAGCACCGTGGCCGACATCCGTCTCGCCGTGTGGCAAGAGATGCGGCG
CAGGGGCTTAGTCGCAGGCCCGCCCGACGGGTCTAGGAAGAAGGCTGAAG
GAGACAGGCCGGGGACGGAGCCAGAGGCCTCGCTGGGATGCTCGCCCGCG
GCCCTACGGCTCCGGGAGAAGCGCAACGCGCAACCGTCGACGATTCTCCA
TGACTCGGACGGAATACCGACGCGCCTGAAGTATCCCACGGAGGGGACTC
CGTGGCTCCTCGTGGCGCAGGCGCTTCCTGTCGAGGAGAATCTCGGACAG
CCCGGTGTCCATGTCGCTGCAGGCAGTAGTTGTGGTGGCGAGGATAAAAA
AGAGAAGGATTTGGGACTGACCGCAAAGGTGTCGTGGGCTGGAGGCCGGG
GTGGTTCTTGCGATGAACTGGCTCGTTTTGATGCCGGTGACCGTAACGCC
GCCGTGGCAGGCGTTTCTCTTCACATCCCGCCCGCTAATGCCAAGGTGAT
TGTGGTGCAGTGGTGGGATCGGTGGGAGTGGCGTCTCACGGAAAAGTACG
AGGCATGGATCAGTCCAACGGAGACCGTTGCGGCCGTTCGAAAGCGTTTC
GCGGAGCAGGTGAGTACGGAGGCGTTAATATGACGGGAAGAAATAAGGGT
GGGGGAGGGGGGGAAAACATATTAGTCCGTTTTTTAGCTCTCTCTGTCGG
GGGGAAGAAGTCTGTCAGGCTTAAGATGTGACAGCTCTATGTAAGGCGAA
GAAAATAAATAGAGCTAAAGTTTTGGCCGGTTAAAGAAAATCGAACGAAA
AATGTAAAAGTTATTTCCTACCATAAACAGCGATGTGCACGTACGACTGC
TGCGTCCCGTCGTCACGTACAAATATTTTTCGTTTCAGTTTTGCCCTCTC
CCTTCGTTACTCGCCCCCCGTCGCCGTCGCCGCCGTCTCTTTCCTTTCGA
AGGTTGGTGTGGACCCTGCTAATATCCGCGCGAACAGATGCACCTCTAAA
ACTCGTTTGAGGCTGGTCGATTTGCGAGGAGCAAGCGACGCAAATCAGTC
TAACAGCAGCAGCGGCTGCCTGGGGCTCGGCGTTGCCTCGGTCGAATCTG
GTGGCTGGAATTCTACCAGCAGCTCGTCGACGATGTGTCGCTGGGGAGAC
CTGGACGCTTCCCGCGGTGATTATGCCGTCATGACGCCGTCCATCTCGGA
AGGGGACCTCGTTCTCCTGCAGGACGTTTCGCAGCCTCTTAAGCGACTCA
TGGCGACCACGGAGGCGGCCATCGTTAGCCATGCAGTCGATCGCGCGGAA
GTGTGCGACATGTCGAGCGTGGGCTCGTGGTACTCGGGAAAAGACGAAAG
TGGCGGGAACGGTAACGGTACCACGGCGACGACGACAACAGCCTCAGCAA
GCTACAGCAGCTCTAAGCCGAAGGAGCGCGCTCTGGTCATTCGCACGCGG
CGAGATCGGCTCCAAGAAGGAAAGATGGCGGCTGCTGCTGCTGCTGCTGC
TGTTGCAACTGCCGCCTCTGCAGCAGCAGCCACAGCAGCGATAGTGGTAG
CAGCCTCTGTAGCTGTAGCCGACACGTCTGCACAAGGCGCCGTGGTGGAT
TTTTCAGTCAAAGGTGACCCCGACGCGAATGGTGGCGTTAGCCTTCGTGG
CGGCGGTGGGTTGGGGACTTCTGAAGGAGTTGAGACGGAGGCAGCACCGC
ACCTGCTTTCCTCGATAGAGGGAACGGGTACGGTCGGCTCCGACGGCAAC
GGTCACGAATGTCCGGGACTGCAAGGCGACCACGATGACGGGGGAGCGGA
CATATCCCAGGAGTTCACGGGGGGAAACGGTATCGGGATGGCTGTGGGCG
GTGATGGTGGCGTTGTCTCGAGTTCGCCCGACCGAGTTCGAGTCTGTGGG
CGAGGAAAGATTGAAGGCGAAAGATTCGGCCAAGATTCGTCGGGAGATCA
AACAGAGAAAGATGACGTGTGGGGGTTAGAATTATCGGAGAGGGAGGCAT
ACGCCGACCTGTCAATGGGTTGCGTGGAGGATGATGCGATAGCGATGCAC
TCGGATGCGGAGGTGGCAGAGCAAGGAGGTCGTGCCCTGTTTGACGACCT
GGCTCTGGTCGAGTAGGTGGCGGGACATCCTTGCGTTTGTCCATCCACGC
CTTGTTTTGTGTTGCTTTGGTGAGGGAAGAGGGTGGAAGGGTGCACCAAC
TTTCCTGTGTAACGCGCGCCGACTGTTGTTGTGCGTGTTTGTGTGTGTGC
TGTAGCATGAGCTTCGTTGCCGGCATCGTCGTTACATGATTACGAAATAT
TCGTCACTTTATTATGGTGTGTGCTGAGCGAGATGCGACACGATTATATA
GCACGACACGCCGCCTCAGTTGGAAAACCGTGTAGATGTTCTCGCTTTTC
TCTCCTCCCCTTTAAGAACTGATGCTGCGGTTATCATCTTCGGTGTGTTT
CATTCAGTATTCAGTATATATTCAGTATATAATTTAATAAGATTAGGAGT
TTCCAAAACACCGTAACACGATTGATTCTTGTTGCTCTCTTGAGGACGTT
GTACAGTAGTTTCTTACGGTGTATGGTGTGACGTTGTGTGTTTTGGCATG
GAAGTGTCAAGGCAACTAGGAGTAGTACTGGCAGTGTGGAACGTCGAGTG
CGCGAAGTCGCGGAAGACCCAGCTCCTGCATCGGGTGACAGCAACAGCCA
CAGCCAAGGGAATTATTGATGTTCACAGGGAAGAGTTATCCCCGTCTGTG
CTCTCTAGATGAAAAATATTTGGGAAATTTCCTGGATAGTTAATTCTTGT
CTGTTGTGTCAAATAAATCTGTTGCTTTAGTTAATTGCGGAGAGGGTGGA
CACTATAATACTTTGACTGAATGACTGAATGGCAAATAGAGCGCTACCGA
TATTATAGAAAGGCCGTTTTTTTTTGTGGTATCAGTTGGAATAGAGGCCT
ATAACTAATACAACAGTATAATACTAATAATATAAAGCAAACCTACTGCC
CTTTTACAAGCAAGTATATGATTTTCCGGTCGGGCCGATGCCCAACACTG
CGTCCTTCGTGGTTGCAGGAGCAACAAACGACGTGGGAGTGGGTGGGTAG
TACGTTTTTGGGGTGCGATCTCACTTTGTGCCGATCGGGGGCATTCGTTT
TACGTGTTGGGTTACTAATCATCCAACCCATTACAGAAACGCCTCATCCG
GCTTGCTGCTGCTGTGGTATCTCACGCCTAGGGTTCTTTTTTTTCTTCTC
TCTAATAAACATTAATTTGGGGGGCCAACTATTTTTCAGGTTCTTGAGTG
TGTACAGTCCCGCGTCCCGGCAGCTACACGTAGTTCGTTAACTATGTGTG
TTATCTTTTGTGTTTCTTTTTCTTTGGAGATTATTTCGCTTTTTCCGAGT
AGTAGTAGTAGTAGTAGTGGTATTAAAAAACATATAAACTCATTGTTGGT
CGCACTTTTAGCAGAAGGTTAACCGTATTTGGTTGTCTTCTTCTCGTGGT
AAGCTGAACAGGGAAAATTATTTTCCCGTCCTTCCGAACATCCACATCTT
CTTAGCACCATTAGAGATGTAGTGGAGGGGACCAACTACCGTCAGGTTCG
AATGCGGACATTTTTTTTATTTTTTAGAAGACTTTAGGCTCATTCTAACT
CTCCTAACATCCACACATTCTTGCACTATAGTTGCAATCCAGGGAACC back to topCoding sequence (CDS) from alignment at H-elongata_contig16029:1866..7713+ >mRNA_H-elongata_contig16029.3871.1 ID=mRNA_H-elongata_contig16029.3871.1|Name=mRNA_H-elongata_contig16029.3871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6426bp|location=Sequence derived from alignment at H-elongata_contig16029:1866..7713+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCAGGGGGAAAGTAAGGAGATGGACGAGCGGCCGAGGGCGTGGGC
GCGTGCTACTGGTATCAATGTAGCGACGGAGGAAGCTCCGATGATTGGGT
TCACGACAGCTAAAGCTCTCGCGGACTCGAATGCTAGGAAGGCCGCAGCA
CCGCCGAAAAGTGAGGCTGGCGGGGATTCCCGGGATGCCGACCAGCCTCC
ACGGAGAACTCTTGGAGTGAATGAGAAGGAGGGTACTAGAACCGATGGTG
GAGATGACGAGGACAAGCTCGTGGTGTTGGGGGAGCGGGGGAGCAGCAAA
GTGTACACGGTTTTCGTAGAGGAGGTCTGGGAAGGGGAAGGGGAATGCGA
GAAGGAAAGCGGAAGCCTCGCGGTGCAAGTCGCTCTGGATCAGCTCAACA
GATGGCGCAGGGGGAAAGTAAGGAGATGGACGAGCGGCCGAGGGCGTGGG
CGCGTGCTACTGGTATCAATGTAGCGACGGAGGAAGCTCCGATGATTGGG
TTCACGACAGCTAAAGCTCTCGCGGACTCGAATGCTAGGAAGGCCGCAGC
ACCGCCGAAAAGTGAGGCTGGCGGGGATTCCCGGGATGCCGACCAGCCTC
CACGGAGAACTCTTGGAGTGAATGAGAAGGAGGGTACTAGAACCGATGGT
GGAGATGACGAGGACAAGCTCGTGGTGTTGGGGGAGCGGGGGAGCAGCAA
AGTGTACACGGTTTTCGTAGAGGAGGTCTGGGAAGGGGAAGGGGAATGCG
AGAAGGAAAGCGGAAGCCTCGCGGTGCAAGTCGCTCTGGATCAGCTCAAC
AGGATGTCACTCAAGCTGCTGCTAACGGGAGGCCTAGAGGGCCCAGACAG
CATCCGCGTGGACAAGCGCTGGACTTTGGACCAGCTCCGAGACGCCATCG
CAGCGGCAACCCGGCGCGACAGTCGTTCCTTCCAGCTCCGGATGCAAGCG
AACGGCTCGGAGATCAGGCCGGGCCCCGAGACCCTGAGAAGTCAAGGGAT
TTTGAATATTTTCAACCTTCATGTGTCGCCCGGGCGGCCGCTCGAGCGCA
ATGAAGAGGCGATCGTGATCGCGCCGCTGGAGGTAGGCTTCGCGGCCGGC
CTCCGCGCCTCCCCGCCACCGTCCGTAGTGAAGGCTCTCGCCGGTGGAAG
AGCCGCCAGCCGTTTTTTGCCGCCGCCTCAGGAGCAGGAGCAGGAGCAGG
AGCAGGAGCAGCATCCGTCTTCTGCAAGCAACAGGCAGGGAGAAGAGGCG
ACTGCGGCTGAGCGTGGCGCGCTCGGCGACCCATCTGGAAATGGCGGAGG
GATTGCCGGGGAGCGTCGGGAGGGATTTTTCTCTGGTAAACAAGACTCCG
ATTTCCGGAACGTTGACATAGAAATTGGCCTAACATCGACCAAGGATTGT
GCTCCTGCCGCCACCCTCGCTGCTGCCTCTTTTTCTTTTGGCTTGCCAAG
AGGTTACACATCTTGCGCGGTAGACTCGAGCGGAAGCGGCGGCGTGACTT
GCAGTATGCTAGGCGAAGCAGTAGCGGCGGGAGAATTTTGCGCCGATGCT
GTGGGAAATATTGGTGGCAGCGGTGGCGGTCCAGCTACAGCCCCGTTGTC
ATCGGCGACGGGAGCAAAAATAAATGATTATGCTTCGTCCGCATCGGTGC
GACCGGACTCAGGCCCCGCTGCCGCCGAGCCGGGGCCTCATGCTTCCGCG
GTCTGGGCCGCTGCAGCAGCGGCGGCCGCGACCGCCTCAAAGCTCGCGAA
GGCAGAAGCAGAGAGGCTCACCACCACCGCTGTCGAGTTCCCCCCAACGG
AGAGCAGCTGGGGCGATCAGTTCACCATTGCGGTGAAGCACGACAGCACC
GTGGCCGACATCCGTCTCGCCGTGTGGCAAGAGATGCGGCGCAGGGGCTT
AGTCGCAGGCCCGCCCGACGGGTCTAGGAAGAAGGCTGAAGGAGACAGGC
CGGGGACGGAGCCAGAGGCCTCGCTGGGATGCTCGCCCGCGGCCCTACGG
CTCCGGGAGAAGCGCAACGCGCAACCGTCGACGATTCTCCATGACTCGGA
CGGAATACCGACGCGCCTGAAGTATCCCACGGAGGGGACTCCGTGGCTCC
TCGTGGCGCAGGCGCTTCCTGTCGAGGAGAATCTCGGACAGCCCGGTGTC
CATGTCGCTGCAGGCAGTAGTTGTGGTGGCGAGGATAAAAAAGAGAAGGA
TTTGGGACTGACCGCAAAGGTGTCGTGGGCTGGAGGCCGGGGTGGTTCTT
GCGATGAACTGGCTCGTTTTGATGCCGGTGACCGTAACGCCGCCGTGGCA
GGCGTTTCTCTTCACATCCCGCCCGCTAATGCCAAGGTGATTGTGGTGCA
GTGGTGGGATCGGTGGGAGTGGCGTCTCACGGAAAAGTACGAGGCATGGA
TCAGTCCAACGGAGACCGTTGCGGCCGTTCGAAAGCGTTTCGCGGAGCAG
GATGTCACTCAAGCTGCTGCTAACGGGAGGCCTAGAGGGCCCAGACAGCA
TCCGCGTGGACAAGCGCTGGACTTTGGACCAGCTCCGAGACGCCATCGCA
GCGGCAACCCGGCGCGACAGTCGTTCCTTCCAGCTCCGGATGCAAGCGAA
CGGCTCGGAGATCAGGCCGGGCCCCGAGACCCTGAGAAGTCAAGGGATTT
TGAATATTTTCAACCTTCATGTGTCGCCCGGGCGGCCGCTCGAGCGCAAT
GAAGAGGCGATCGTGATCGCGCCGCTGGAGGTAGGCTTCGCGGCCGGCCT
CCGCGCCTCCCCGCCACCGTCCGTAGTGAAGGCTCTCGCCGGTGGAAGAG
CCGCCAGCCGTTTTTTGCCGCCGCCTCAGGAGCAGGAGCAGGAGCAGGAG
CAGGAGCAGCATCCGTCTTCTGCAAGCAACAGGCAGGGAGAAGAGGCGAC
TGCGGCTGAGCGTGGCGCGCTCGGCGACCCATCTGGAAATGGCGGAGGGA
TTGCCGGGGAGCGTCGGGAGGGATTTTTCTCTGGTAAACAAGACTCCGAT
TTCCGGAACGTTGACATAGAAATTGGCCTAACATCGACCAAGGATTGTGC
TCCTGCCGCCACCCTCGCTGCTGCCTCTTTTTCTTTTGGCTTGCCAAGAG
GTTACACATCTTGCGCGGTAGACTCGAGCGGAAGCGGCGGCGTGACTTGC
AGTATGCTAGGCGAAGCAGTAGCGGCGGGAGAATTTTGCGCCGATGCTGT
GGGAAATATTGGTGGCAGCGGTGGCGGTCCAGCTACAGCCCCGTTGTCAT
CGGCGACGGGAGCAAAAATAAATGATTATGCTTCGTCCGCATCGGTGCGA
CCGGACTCAGGCCCCGCTGCCGCCGAGCCGGGGCCTCATGCTTCCGCGGT
CTGGGCCGCTGCAGCAGCGGCGGCCGCGACCGCCTCAAAGCTCGCGAAGG
CAGAAGCAGAGAGGCTCACCACCACCGCTGTCGAGTTCCCCCCAACGGAG
AGCAGCTGGGGCGATCAGTTCACCATTGCGGTGAAGCACGACAGCACCGT
GGCCGACATCCGTCTCGCCGTGTGGCAAGAGATGCGGCGCAGGGGCTTAG
TCGCAGGCCCGCCCGACGGGTCTAGGAAGAAGGCTGAAGGAGACAGGCCG
GGGACGGAGCCAGAGGCCTCGCTGGGATGCTCGCCCGCGGCCCTACGGCT
CCGGGAGAAGCGCAACGCGCAACCGTCGACGATTCTCCATGACTCGGACG
GAATACCGACGCGCCTGAAGTATCCCACGGAGGGGACTCCGTGGCTCCTC
GTGGCGCAGGCGCTTCCTGTCGAGGAGAATCTCGGACAGCCCGGTGTCCA
TGTCGCTGCAGGCAGTAGTTGTGGTGGCGAGGATAAAAAAGAGAAGGATT
TGGGACTGACCGCAAAGGTGTCGTGGGCTGGAGGCCGGGGTGGTTCTTGC
GATGAACTGGCTCGTTTTGATGCCGGTGACCGTAACGCCGCCGTGGCAGG
CGTTTCTCTTCACATCCCGCCCGCTAATGCCAAGGTGATTGTGGTGCAGT
GGTGGGATCGGTGGGAGTGGCGTCTCACGGAAAAGTACGAGGCATGGATC
AGTCCAACGGAGACCGTTGCGGCCGTTCGAAAGCGTTTCGCGGAGCAGGT
TGGTGTGGACCCTGCTAATATCCGCGCGAACAGATGCACCTCTAAAACTC
GTTTGAGGCTGGTCGATTTGCGAGGAGCAAGCGACGCAAATCAGTCTAAC
AGCAGCAGCGGCTGCCTGGGGCTCGGCGTTGCCTCGGTCGAATCTGGTGG
CTGGAATTCTACCAGCAGCTCGTCGACGATGTGTCGCTGGGGAGACCTGG
ACGCTTCCCGCGGTGATTATGCCGTCATGACGCCGTCCATCTCGGAAGGG
GACCTCGTTCTCCTGCAGGACGTTTCGCAGCCTCTTAAGCGACTCATGGC
GACCACGGAGGCGGCCATCGTTAGCCATGCAGTCGATCGCGCGGAAGTGT
GCGACATGTCGAGCGTGGGCTCGTGGTACTCGGGAAAAGACGAAAGTGGC
GGGAACGGTAACGGTACCACGGCGACGACGACAACAGCCTCAGCAAGCTA
CAGCAGCTCTAAGCCGAAGGAGCGCGCTCTGGTCATTCGCACGCGGCGAG
ATCGGCTCCAAGAAGGAAAGATGGCGGCTGCTGCTGCTGCTGCTGCTGTT
GCAACTGCCGCCTCTGCAGCAGCAGCCACAGCAGCGATAGTGGTAGCAGC
CTCTGTAGCTGTAGCCGACACGTCTGCACAAGGCGCCGTGGTGGATTTTT
CAGTCAAAGGTGACCCCGACGCGAATGGTGGCGTTAGCCTTCGTGGCGGC
GGTGGGTTGGGGACTTCTGAAGGAGTTGAGACGGAGGCAGCACCGCACCT
GCTTTCCTCGATAGAGGGAACGGGTACGGTCGGCTCCGACGGCAACGGTC
ACGAATGTCCGGGACTGCAAGGCGACCACGATGACGGGGGAGCGGACATA
TCCCAGGAGTTCACGGGGGGAAACGGTATCGGGATGGCTGTGGGCGGTGA
TGGTGGCGTTGTCTCGAGTTCGCCCGACCGAGTTCGAGTCTGTGGGCGAG
GAAAGATTGAAGGCGAAAGATTCGGCCAAGATTCGTCGGGAGATCAAACA
GAGAAAGATGACGTGTGGGGGTTAGAATTATCGGAGAGGGAGGCATACGC
CGACCTGTCAATGGGTTGCGTGGAGGATGATGCGATAGCGATGCACTCGG
ATGCGGAGGTGGCAGAGCAAGGAGGTCGTGCCCTGTTTGACGACCTGGCT
CTGGTCGAGTAGGTTGGTGTGGACCCTGCTAATATCCGCGCGAACAGATG
CACCTCTAAAACTCGTTTGAGGCTGGTCGATTTGCGAGGAGCAAGCGACG
CAAATCAGTCTAACAGCAGCAGCGGCTGCCTGGGGCTCGGCGTTGCCTCG
GTCGAATCTGGTGGCTGGAATTCTACCAGCAGCTCGTCGACGATGTGTCG
CTGGGGAGACCTGGACGCTTCCCGCGGTGATTATGCCGTCATGACGCCGT
CCATCTCGGAAGGGGACCTCGTTCTCCTGCAGGACGTTTCGCAGCCTCTT
AAGCGACTCATGGCGACCACGGAGGCGGCCATCGTTAGCCATGCAGTCGA
TCGCGCGGAAGTGTGCGACATGTCGAGCGTGGGCTCGTGGTACTCGGGAA
AAGACGAAAGTGGCGGGAACGGTAACGGTACCACGGCGACGACGACAACA
GCCTCAGCAAGCTACAGCAGCTCTAAGCCGAAGGAGCGCGCTCTGGTCAT
TCGCACGCGGCGAGATCGGCTCCAAGAAGGAAAGATGGCGGCTGCTGCTG
CTGCTGCTGCTGTTGCAACTGCCGCCTCTGCAGCAGCAGCCACAGCAGCG
ATAGTGGTAGCAGCCTCTGTAGCTGTAGCCGACACGTCTGCACAAGGCGC
CGTGGTGGATTTTTCAGTCAAAGGTGACCCCGACGCGAATGGTGGCGTTA
GCCTTCGTGGCGGCGGTGGGTTGGGGACTTCTGAAGGAGTTGAGACGGAG
GCAGCACCGCACCTGCTTTCCTCGATAGAGGGAACGGGTACGGTCGGCTC
CGACGGCAACGGTCACGAATGTCCGGGACTGCAAGGCGACCACGATGACG
GGGGAGCGGACATATCCCAGGAGTTCACGGGGGGAAACGGTATCGGGATG
GCTGTGGGCGGTGATGGTGGCGTTGTCTCGAGTTCGCCCGACCGAGTTCG
AGTCTGTGGGCGAGGAAAGATTGAAGGCGAAAGATTCGGCCAAGATTCGT
CGGGAGATCAAACAGAGAAAGATGACGTGTGGGGGTTAGAATTATCGGAG
AGGGAGGCATACGCCGACCTGTCAATGGGTTGCGTGGAGGATGATGCGAT
AGCGATGCACTCGGATGCGGAGGTGGCAGAGCAAGGAGGTCGTGCCCTGT
TTGACGACCTGGCTCTGGTCGAGTAG back to top
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