mRNA_H-elongata_contig160246.3869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160246.3869.1
Unique NamemRNA_H-elongata_contig160246.3869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5KMR5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 8.970e-21
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAF  S+RW +KWAK   LSKRRRSN KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   M     GE R  KY
Sbjct:  216 AAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKY 296
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5KH13_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH13_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.860e-20
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAF  S+RW +KWAK   LSKRRRSN KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   M     GE R  KY
Sbjct:   58 AAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKY 138
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.550e-20
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAF  S+RW +KWAK   LSKRRRSN KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   M     GE R  KY
Sbjct:  248 AAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKY 328
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.640e-20
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAF  S+RW +KWAK   LSKRRRSN KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   M     GE R  KY
Sbjct:  288 AAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKY 368
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.640e-20
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAF  S+RW +KWAK   LSKRRRSN KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   M     GE R  KY
Sbjct:  220 AAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKY 300
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.680e-20
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAF  S+RW +KWAK   LSKRRRSN KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   M     GE R  KY
Sbjct:  402 AAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKY 482
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.380e-19
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRL 240
            AAAF  S+RW +KWAK   LSKRRRSN KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   M     GE R+
Sbjct:  402 AAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRV 479
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5KWF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWF5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.240e-19
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAFR S+RW +KWAK   LSKRRR+N KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   +      E R+ KY
Sbjct:  356 AAAFRASFRWARKWAKRHNLSKRRRTNLKNKSVEERLPKIQRFHRLFRKLLQEPVRYRAPDESDVSAITTVAERESRVPKY 436
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: A0A6H5J6R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.260e-19
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AAAFR S+RW +KWAK   LSKRRR+N KNKSVEERLPKI+RFHR FRKLL+EPVR +    S+   +      E R+ KY
Sbjct:  401 AAAFRASFRWARKWAKRHNLSKRRRTNLKNKSVEERLPKIQRFHRLFRKLLQEPVRYRAPDESDVSAITTVAERESRVPKY 481
[Close]
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.400e-19
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    7 AAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFRKLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY 249
            AA FRPS+RWMQKWAK   +  RRRSN K KS+EERLP+I+RFHR FR+L++EPV+R+  VF E   +      E RL KY
Sbjct:  395 AAVFRPSFRWMQKWAKRHKVVPRRRSNLKAKSIEERLPRIQRFHRRFRQLIEEPVQRRKVVFPEGASLSSGGTEEPRLEKY 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160246.3869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMR5_9PHAE8.970e-2162.96C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KH13_9PHAE2.860e-2062.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KZ92_9PHAE3.550e-2062.96DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KDV1_9PHAE3.640e-2062.96C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKG3_9PHAE3.640e-2062.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFX9_9PHAE3.680e-2062.96C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5K4R4_9PHAE2.380e-1962.82C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWF5_9PHAE3.240e-1960.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6R3_9PHAE3.260e-1960.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF1_ECTSI4.400e-1958.02C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160246contigH-elongata_contig160246:1222..1471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1e-16
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.0156498-CDS-H-elongata_contig160246:1221..14701622929941.0156498-CDS-H-elongata_contig160246:1221..1470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160246 1222..1470 +
1691679216.5228975-CDS-H-elongata_contig160246:1221..14701691679216.5228975-CDS-H-elongata_contig160246:1221..1470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160246 1222..1470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160246.3869.1prot_H-elongata_contig160246.3869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160246 1222..1470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160246.3869.1

>prot_H-elongata_contig160246.3869.1 ID=prot_H-elongata_contig160246.3869.1|Name=mRNA_H-elongata_contig160246.3869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
PPAAAFRPSYRWMQKWAKAKTLSKRRRSNSKNKSVEERLPKIRRFHRGFR
KLLKEPVRRKGHVFSETEPMRGAVAGELRLAKY
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mRNA from alignment at H-elongata_contig160246:1222..1471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160246.3869.1 ID=mRNA_H-elongata_contig160246.3869.1|Name=mRNA_H-elongata_contig160246.3869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=250bp|location=Sequence derived from alignment at H-elongata_contig160246:1222..1471+ (Himanthalia elongata Himel1 dioecious)
CCCCCGGCGGCAGCGTTCCGCCCCTCCTACAGGTGGATGCAAAAATGGGC
CAAGGCAAAAACGTTGTCCAAACGGCGCAGAAGCAACTCCAAGAACAAGT
CTGTCGAGGAGCGCTTGCCGAAGATCCGCCGTTTCCACAGAGGATTTCGC
AAGCTGCTGAAAGAGCCCGTGCGTCGCAAGGGGCATGTTTTTTCTGAGAC
GGAGCCCATGAGGGGGGCAGTGGCGGGAGAGCTCAGGCTGGCCAAGTACG
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Coding sequence (CDS) from alignment at H-elongata_contig160246:1222..1471+

>mRNA_H-elongata_contig160246.3869.1 ID=mRNA_H-elongata_contig160246.3869.1|Name=mRNA_H-elongata_contig160246.3869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig160246:1222..1471+ (Himanthalia elongata Himel1 dioecious)
CCCCCGGCGGCAGCGTTCCGCCCCTCCTACAGGTGGATGCAAAAATGGGC
CAAGGCAAAAACGTTGTCCAAACGGCGCAGAAGCAACTCCAAGAACAAGT
CTGTCGAGGAGCGCTTGCCGAAGATCCGCCGTTTCCACAGAGGATTTCGC
AAGCTGCTGAAAGAGCCCGTGCGTCGCAAGGGGCATGTTTTTTCTGAGAC
GGAGCCCATGAGGGGGGCAGTGGCGGGAGAGCTCAGGCTGGCCAAGTACC
CCCCGGCGGCAGCGTTCCGCCCCTCCTACAGGTGGATGCAAAAATGGGCC
AAGGCAAAAACGTTGTCCAAACGGCGCAGAAGCAACTCCAAGAACAAGTC
TGTCGAGGAGCGCTTGCCGAAGATCCGCCGTTTCCACAGAGGATTTCGCA
AGCTGCTGAAAGAGCCCGTGCGTCGCAAGGGGCATGTTTTTTCTGAGACG
GAGCCCATGAGGGGGGCAGTGGCGGGAGAGCTCAGGCTGGCCAAGTAC
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