mRNA_H-elongata_contig160178.3867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160178.3867.1
Unique NamemRNA_H-elongata_contig160178.3867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.930e-24
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 CPHCYQSKGPGPVRARAESLTDPDELALYGDGDWPLLTVYERGEMATNGNYLEPDSISVRHGICGDPEQ 207
            CPHC+QS+GP  VR R E  T+   LA+YG G+WP L  YER E+  NGNY EP+ ISVRHGICGDPEQ
Sbjct:   35 CPHCFQSRGPSAVRERGEENTEEAVLAMYGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQ 103
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BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Match: D7G892_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G892_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.980e-20
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 CPHCYQSKGPGPVRARAESLTDPDELALYGDGDWPLLTVYERGEMATNGNYLEPDSISVRHGICGDPEQ 207
            CP C  S GP  V+ +    T+   LA YGDG+WPLL  Y +GEM  NGN+ E D IS RHGICGDP+Q
Sbjct:   50 CPGCLDSGGPVYVKEKGIGYTNGGLLAEYGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQ 118
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BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.060e-19
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 CPHCYQSKGPGPVRARAESLTDPDELALYGDGDWPLLTVYERGEMATNGNYLEPDSISVRHGICGDPEQ 207
            CP C  S GP  V+ +    T+   LA YGDG+WPLL  Y +GEM  NGN+ E D IS RHGICGDP+Q
Sbjct:   50 CPGCLNSGGPVYVKEKGIGYTNGGLLAEYGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQ 118
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BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.600e-18
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   13 YQSKGPGPVRARAESLTDPDELALYGDGDWPLLTVYERGEMATNGNYLEPDSISVRHGICGDPE 204
            Y + G   V+ RA  LTDP  LA YGDG +PL  VY++GEMA NGNY+EP  ISVRHG+CGDP+
Sbjct:   20 YNAGGQVEVQDRARRLTDPAILAEYGDGWYPLRWVYDKGEMAPNGNYIEPQGISVRHGVCGDPK 83
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BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 7.240e-16
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 CPHCYQSKGPGPVRARAESLTDPDELALYGDG-DWPLLTVYERGEMATNGNYLEPDSISVRHGICGDPEQ 207
            CPHCY + G    +AR   L DPD L  +G G ++PL  V     +A NGNYLEP+ ++VRHG+CGDPEQ
Sbjct:   47 CPHCYNAHGSAGTKARGIELMDPDVLESHGGGSEFPLAFV----PLAPNGNYLEPNEVAVRHGVCGDPEQ 112
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BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Match: D7FZQ9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 7.670e-16
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 CPHCYQSKGPGPVRARAESLTDPDELALYGDG-DWPLLTVYERGEMATNGNYLEPDSISVRHGICGDPEQ 207
            CP CY + G    +AR   L DPD LA +G G D+PL  V      A NGNYLEP+ ++VRHG+CGDPEQ
Sbjct:   48 CPQCYNAHGSNGTKARGNELMDPDVLAKHGGGIDFPLSFV----PRAPNGNYLEPNEVAVRHGVCGDPEQ 113
[Close]
BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Match: A0A6H5L279_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L279_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   64 DPDELALYGDG-DWPLLTVYERGEMATNGNYLEPDSISVRHGICGDPEQ 207
            DPD L  +G G ++PL  V     +A NGNYLEP+ ++VRHG+CGDPEQ
Sbjct:    2 DPDVLESHGGGNEFPLAFV----PLAPNGNYLEPNEVAVRHGVCGDPEQ 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160178.3867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JI36_9PHAE1.930e-2463.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G892_ECTSI1.980e-2055.07EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFL8_9PHAE6.060e-1955.07CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FU28_ECTSI1.600e-1860.94EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZR0_ECTSI7.240e-1651.43EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZQ9_ECTSI7.670e-1652.86EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L279_9PHAE1.510e-855.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160178contigH-elongata_contig160178:94..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog2880.D7FSZ8
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.8183398-CDS-H-elongata_contig160178:93..2181622929940.8183398-CDS-H-elongata_contig160178:93..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160178 94..218 -
1691679216.4648335-CDS-H-elongata_contig160178:93..2181691679216.4648335-CDS-H-elongata_contig160178:93..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160178 94..218 -
1622929940.837165-CDS-H-elongata_contig160178:514..5961622929940.837165-CDS-H-elongata_contig160178:514..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160178 515..596 -
1691679216.4763687-CDS-H-elongata_contig160178:514..5961691679216.4763687-CDS-H-elongata_contig160178:514..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160178 515..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160178.3867.1prot_H-elongata_contig160178.3867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160178 94..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160178.3867.1

>prot_H-elongata_contig160178.3867.1 ID=prot_H-elongata_contig160178.3867.1|Name=mRNA_H-elongata_contig160178.3867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
CPHCYQSKGPGPVRARAESLTDPDELALYGDGDWPLLTVYERGEMATNGN
YLEPDSISVRHGICGDPEQ
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mRNA from alignment at H-elongata_contig160178:94..596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160178.3867.1 ID=mRNA_H-elongata_contig160178.3867.1|Name=mRNA_H-elongata_contig160178.3867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig160178:94..596- (Himanthalia elongata Himel1 dioecious)
TGCCCTCATTGCTACCAGAGCAAAGGACCAGGCCCTGTTCGCGCCAGGGC
TGAATCTCTTACCGACCCCGACGAGCTGGCATGTAAGTCCAAACAATCGA
CGGTGAGAGCTGCCTAGGTTTGATATATCCCATACAGCAGTTGAATCTAA
AAACAAACATCAATTACTTCAGCATGGAAATGTTTTTGCAACTTTGCGAG
TACGTCGAGCTATTTCTAGTCGTATTAGCATATTGCCTTAAGTACTAATA
AAAACGTTTTATGACGACAGTGTCTGACGAGTGTTTGCTACGTGCCAACG
GTTGGTTGCTCTACACGTACTGATGAAGTATCTTAACCCGAACGATGCCC
ATCACTTTGGTCGCTTTTGTTGCCGCAGTATATGGTGACGGAGATTGGCC
CCTCTTGACCGTGTACGAGAGGGGAGAGATGGCAACCAATGGTAACTATC
TTGAGCCGGATTCGATTTCTGTTCGGCATGGGATTTGCGGAGATCCTGAA
CAG
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Coding sequence (CDS) from alignment at H-elongata_contig160178:94..596-

>mRNA_H-elongata_contig160178.3867.1 ID=mRNA_H-elongata_contig160178.3867.1|Name=mRNA_H-elongata_contig160178.3867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig160178:94..596- (Himanthalia elongata Himel1 dioecious)
TGCCCTCATTGCTACCAGAGCAAAGGACCAGGCCCTGTTCGCGCCAGGGC
TGAATCTCTTACCGACCCCGACGAGCTGGCATTGCCCTCATTGCTACCAG
AGCAAAGGACCAGGCCCTGTTCGCGCCAGGGCTGAATCTCTTACCGACCC
CGACGAGCTGGCATTATATGGTGACGGAGATTGGCCCCTCTTGACCGTGT
ACGAGAGGGGAGAGATGGCAACCAATGGTAACTATCTTGAGCCGGATTCG
ATTTCTGTTCGGCATGGGATTTGCGGAGATCCTGAACAGTATATGGTGAC
GGAGATTGGCCCCTCTTGACCGTGTACGAGAGGGGAGAGATGGCAACCAA
TGGTAACTATCTTGAGCCGGATTCGATTTCTGTTCGGCATGGGATTTGCG
GAGATCCTGAACAG
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