mRNA_H-elongata_contig160147.3864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160147.3864.1
Unique NamemRNA_H-elongata_contig160147.3864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 97.8 bits (242), Expect = 2.320e-19
Identity = 80/271 (29.52%), Postives = 122/271 (45.02%), Query Frame = 1
Query:    1 AWRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHI------TVNRGKGGDR---RHHPKLNRKCFNCGKRGHYARDCRTSEESGVTYTRKGGGSGKCYISCG-DRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            AW  L   Y        + ++  ++   ME G    K + + D L+  L  LG+  + E+R+ VI++S LPT+YE+ C +++N        E++  +  +Y RL +++   +A+ A+          T   GKG      R +     KCFNCG+ GH  RDC             G        + G  R   W   SGAT HM+  R  +  YK     + V IADG  + V G G + +     G    R+KM DV ++PG+ R LLS
Sbjct:   83 AWNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIVENAK-DFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDCPDPNA--------GNNDDDAVFAVGKSRSAAWLIDSGATAHMTPHRNDLFEYKDLDSDVEVTIADGKKIRVVGTGSVRL----TGIDGTRIKMIDVLFIPGLDRQLLS 339          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: A0A225V1D5_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V1D5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.050e-18
Identity = 71/238 (29.83%), Postives = 112/238 (47.06%), Query Frame = 1
Query:   85 MEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHITVNRGKGGDRRHHPKLNR-----KCFNCGKRGHYARDCRTSEESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            ME G    K +   D LV  L  LG+  V E+R+ V+++S LP++YE+   +++N        E +  +  +++RL +++   KA            G+G  R+ + ++       KCF C + GH  RDC                S   +    +R   W   SGAT HM+  R  +  + +   G+ V IADG  L V G G +++    PG   KR+KM +V Y+PG+ R LLS
Sbjct:    1 MEEGTPMAKHLDAFDELVVGLQTLGEP-VDETRQMVVLLSSLPSEYELIASIVENTK-DTTLIEFKEKLLKEHDRLQKKETTEKAFRVKGNPGRFKEGRGNGRKGNRQIRSGGFKGKCFGCDQVGHMKRDCPVKNNDSD--------SDAVFAVGEERLTGWLIDSGATSHMTPFREDMFTFDRMVSGIEVTIADGKKLQVAGKGTVKL----PGVNGKRIKMMEVLYIPGLDRRLLS 224          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: A0A0N1ICY1_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1ICY1_PAPMA)

HSP 1 Score: 76.3 bits (186), Expect = 5.090e-12
Identity = 75/265 (28.30%), Postives = 128/265 (48.30%), Query Frame = 1
Query:    1 AWRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHITVNRGKGGDRRHHPKLNRKCFNCGKRGHYARDCRTS----EESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            AW NL+  Y  KG    L +   + G  +E       ++++I  L   L  + +  + +    V+I+SGLP DY+     L+N+ + L  +EI  V G    +L ++          +  +  NR K  ++R+  K+  +CF C K  HYA++C T     E     Y +   G+    +S       W   SGAT HM++ ++ +  Y   +P + V +A+ N +  +G G +E+ +   GHT +  K+ +V YVPG+S NL+S
Sbjct:  103 AWNNLKKAYEDKGLCRRLGLLRTLFGLKLEQFENMEAYLLKITELDQQLRDI-NAPLDDDFLSVVILSGLPPDYDPLIMALENSNIKLC-SEI--VKG----KLLQENLRRDFEKCEENALFTNRVKN-EKRNFSKV--RCFICKKPNHYAKNCPTKINKKERRCDKYEKAWNGTLLTALSVDINSNAWYIDSGATCHMTNNKSLLQNYSVHTPKL-VTVANNNKMYSEGHGDVEILL--KGHT-QPTKLIEVIYVPGLSTNLIS 352          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: UPI001C36177D (Uncharacterized protein n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI001C36177D)

HSP 1 Score: 73.6 bits (179), Expect = 3.800e-11
Identity = 65/261 (24.90%), Postives = 121/261 (46.36%), Query Frame = 1
Query:    1 AWRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHITVNRGKGGDRRHHPKLNRKCFNCGKRGHYARDCRTSEESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            AW NL+T Y  +G    L +   + G  +E   +   ++++I  L   L  + +  + +    V+I+SGLP+DY+     L+N+ + L    ++       ++L +++         +G +  NR     R +      KC+ C K  HYA++C           +   G+    +S   +   W   SGAT HM++ +  +  Y   +P + V +A+   +  +G G + + +   GH+ +  K+ DV YVPG+S NL+S
Sbjct:   99 AWNNLKTAYEDRGLCRRLGLLRTMLGLKLEQFNDMEAYLLKITELDQQLRDI-NAPLDDDFLSVLILSGLPSDYDPLIMALENSNIKLCSETVK-------SKLLQEKLRRDFDKNEEGAMFTNRN--AKRGNKTSDKNKCYICKKPNHYAKNCPNKTNKSEKCEKALNGTLLTALSTDVKSNAWYVDSGATCHMTNNKYLLQNYVVDTPRL-VTVANKEKMYSEGHGEVHLLL--KGHS-QNTKLCDVVYVPGLSTNLIS 345          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: H3GP57_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP57_PHYRM)

HSP 1 Score: 71.2 bits (173), Expect = 2.190e-10
Identity = 71/277 (25.63%), Postives = 122/277 (44.04%), Query Frame = 1
Query:    1 AWRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSK-----AMSASKGHI--TVNRGKGGDRRHHPKLNRKCFNCGKRGHYARDCRTS--------EESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNT-LPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            AW  LE  +RA+     L +  + +           K + E+++LV ++   G +   E   C  ++  LP  YE   +  +   + +   ++  +VG       RQ+ +++     A+ A+KG+   T  + +GG R    K +  CFNCGK GHYARDCR+         +ES V +           ++     E W   SGA+ HM  TR     Y   +   +V  A  +  L V G G +++ V   G +    ++++  +V  +S+NL S
Sbjct:   68 AWDKLEKFHRAQDVANRLWLKEKFSS-FKYTMSSVSKHVTELEQLVLEMKSAGCEPSDED-VCATLLRSLPASYESLVQAFR---MSMTELKLTDLVGKLIAEEVRQKDSTRIEEATALLANKGYAKDTKKKQQGGRR----KPSGACFNCGKMGHYARDCRSQASPENEVLDESNVAFN----------VTEMFASESWVMDSGASTHMCKTREAFKDYTPMTKSYSVASAKSSAKLKVLGHGTVQLRV-WSGRSWINARLENALHVQDLSKNLFS 324          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: H3H7C1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7C1_PHYRM)

HSP 1 Score: 67.8 bits (164), Expect = 1.920e-9
Identity = 69/278 (24.82%), Postives = 124/278 (44.60%), Query Frame = 1
Query:    1 AWRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAE-IERVVGNQYNRLFRQQQNSK-----AMSASKGHI--TVNRGKGGDRRHHPKLNRKCFNCGKRGHYARDCRTS--------EESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNT-LPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            AW  LE  +RA+     L +  + +           K + E+++LV ++   G +   E   C  ++  LP  YE   +  + +   L   + +++++  +     RQ+ +++     A+ A+KG+   T  + +GG R    K +  CFNCGK GHYARDCR+         +ES V +           ++     E W   SGA+ HM  TR     +   +   +V  A  +  L V G G +++ V   G +    ++++  +V  +S+NL S
Sbjct:    2 AWDKLEKFHRAQDVANRLWLKEKFSS-FKYTTSSVSKHVTELEQLVLEMKSAGCEPSDED-VCATLLRSLPASYESLVQAFRMSMTELKLTDLVDKLIAEE----VRQKDSTRIEEATALLANKGYAKDTKKKQQGGRR----KPSGACFNCGKMGHYARDCRSKASPENEVLDESNVAFN----------VTEMFASESWVMDSGASTHMCKTREAFKNHTPMTKSYSVASAKSSAKLKVLGHGTVQLRV-WSGRSWINARLENALHVQDLSKNLFS 258          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: A0A5D3CFX6_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CFX6_CUCME)

HSP 1 Score: 68.2 bits (165), Expect = 2.220e-9
Identity = 66/284 (23.24%), Postives = 127/284 (44.72%), Query Frame = 1
Query:    4 WRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHITVNRGKGGDRRHHPKL---NRKCFNCGKRGHYARDC-------RTSEESGVT-------------YTRKGGGSGKCY-ISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            W+ LE+ Y  K     + +  +  G  M+      + + E  ++V DLN +G+K +++  + VI+++ LP  Y      +K     L  + +   +  +   + +++++ + + A +G       KG +R    K    +RKCF C K GH+ ++C        ++ E+ VT               + G  S +   +S  D ++ W    G TFHM+H +  ++ ++K   G  + + D  T  V G G +++      H      + +V YVP + RNL+S
Sbjct:   31 WKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLGEFQKIVVDLNNIGEK-MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA-RGRSEKKSWKGKERNFRSKSKEKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAXXXXXXXXAKTGYESAEVLMVSHRDIQDAWIMDLGCTFHMTHHQDFLTNFQKGDGGKVL-LGDNGTCDVKGTGSVQIAT----HDGMVRILTNVRYVPKLKRNLIS 307          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: A0A6A3BK95_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BK95_HIBSY)

HSP 1 Score: 67.8 bits (164), Expect = 3.450e-9
Identity = 67/250 (26.80%), Postives = 114/250 (45.60%), Query Frame = 1
Query:   85 MEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHI---------TVNRGKGGDRRHHPKLNRK---CFNCGKRGHYARDCR-----TSEESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            M  G    + + E++ +   L+ +  +   E R  +I++S LP  +      + ++  G N+ + + V     +   R++++ +A ++S  H            NRG+   RR   +   K   C+NCGK+GH+ RDCR     T  +     T + G +    +S     E W   SGA+FH +  R  +  Y     G  V +AD  TL + G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  111 MAEGASVAQHLNELNTIATQLSSVEIEFDDEVR-ALILLSSLPDSWNATVTAVSSSS-GNNKLKFDDVRDLVLSEEIRRRESGEASTSSALHTESRGRTSERNSNRGRSKSRRGKSRTGNKDFTCYNCGKKGHFKRDCRAPKKNTGAQESANMTEETGDA--MILSVNSPIESWILDSGASFHSTPCREIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 351          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: A0A6A2W9F3_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2W9F3_HIBSY)

HSP 1 Score: 66.6 bits (161), Expect = 8.810e-9
Identity = 66/250 (26.40%), Postives = 114/250 (45.60%), Query Frame = 1
Query:   85 MEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHI---------TVNRGKGGDRRHHPKLNRK---CFNCGKRGHYARDCR-----TSEESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            M  G    + + E++ +   L+ +  +   E R  +I++S LP  +        ++  G ++ + + V     +   R++++ +A ++S  H            NRG+   RR   ++  K   C+NCGK+GH+ RDCR     T  +     T + G +    +S     E W   SGA+FH +  R  +  Y     G  V +AD  TL + G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  111 MAEGASMAQHLNELNTITTQLSSVEIEFDDEVR-ALILLSSLPDSWNATVTAFSSSS-GNSKLKFDDVRDLVLSEEIRRRESGEASTSSALHTESRGRTSERNSNRGRSKSRRGKSRIGNKDFTCYNCGKKGHFKRDCRAPKKNTGAQESANITEETGDA--MILSVNSPIESWILDSGASFHSTPCREIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 351          
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Match: A0A5D3DNU1_CUCME (Putative gag-pol polyprotein n=6 Tax=Cucumis melo TaxID=3656 RepID=A0A5D3DNU1_CUCME)

HSP 1 Score: 66.6 bits (161), Expect = 8.930e-9
Identity = 67/284 (23.59%), Postives = 126/284 (44.37%), Query Frame = 1
Query:    4 WRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLNQLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQYNRLFRQQQNSKAMSASKGHITVNRGKGGDRRHHPKL---NRKCFNCGKRGHYARDC-------RTSEESGVT-------------YTRKGGGSGKCY-ISCGDRKEEWESGSGATFHMSHTRAGISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVTYVPGISRNLLS 783
            W+ LE+ Y  K     + +  +  G  M+      + + E  ++V DLN +G+K +++  + VI+++ LP  Y      +K     L  + +   +  +   + +++++ + + A +G       KG +R    K    +RKCF C K GH+ ++C        ++ E+ VT                 G  S +   +S  D ++ W   SG TFHM+  R  ++ ++K   G  + + D  T  V G G +++      H      + +V YVP + RNL+S
Sbjct:   84 WKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEK-MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA-RGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAXXXXXXXXXETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKVL-LGDNGTCDVKGTGSVQIAT----HDGMVRILTNVRYVPKLKRNLIS 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160147.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H572_PHYRM2.320e-1929.52Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A225V1D5_9STRA7.050e-1829.83Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A0N1ICY1_PAPMA5.090e-1228.30Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C36177D3.800e-1124.90Uncharacterized protein n=2 Tax=Manduca sexta TaxI... [more]
H3GP57_PHYRM2.190e-1025.63Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
H3H7C1_PHYRM1.920e-924.82CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A5D3CFX6_CUCME2.220e-923.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3BK95_HIBSY3.450e-926.80Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A2W9F3_HIBSY8.810e-926.40Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A5D3DNU1_CUCME8.930e-923.59Putative gag-pol polyprotein n=6 Tax=Cucumis melo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160147contigH-elongata_contig160147:328..1278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue9.2e-19
Seed eggNOG ortholog164328.Phyra85925
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size783
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.6168504-CDS-H-elongata_contig160147:327..5811622929940.6168504-CDS-H-elongata_contig160147:327..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160147 328..581 -
1691679216.3883884-CDS-H-elongata_contig160147:327..5811691679216.3883884-CDS-H-elongata_contig160147:327..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160147 328..581 -
1622929940.6444597-CDS-H-elongata_contig160147:749..12781622929940.6444597-CDS-H-elongata_contig160147:749..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160147 750..1278 -
1691679216.4085186-CDS-H-elongata_contig160147:749..12781691679216.4085186-CDS-H-elongata_contig160147:749..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160147 750..1278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160147.3864.1prot_H-elongata_contig160147.3864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160147 328..1278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160147.3864.1

>prot_H-elongata_contig160147.3864.1 ID=prot_H-elongata_contig160147.3864.1|Name=mRNA_H-elongata_contig160147.3864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
AWRNLETHYRAKGTREILCVSHEINGKIMEPGGEPFKFMMEIDRLVADLN
QLGDKSVTESRKCVIIISGLPTDYEMECRMLKNNPVGLNRAEIERVVGNQ
YNRLFRQQQNSKAMSASKGHITVNRGKGGDRRHHPKLNRKCFNCGKRGHY
ARDCRTSEESGVTYTRKGGGSGKCYISCGDRKEEWESGSGATFHMSHTRA
GISAYKKASPGMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKRVKMDDVT
YVPGISRNLLS
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mRNA from alignment at H-elongata_contig160147:328..1278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160147.3864.1 ID=mRNA_H-elongata_contig160147.3864.1|Name=mRNA_H-elongata_contig160147.3864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=951bp|location=Sequence derived from alignment at H-elongata_contig160147:328..1278- (Himanthalia elongata Himel1 dioecious)
GCGTGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGAT ACTTTGCGTGTCCCATGAAATCAACGGGAAAATAATGGAACCAGGTGGGG AACCATTCAAATTTATGATGGAAATTGACAGGCTAGTAGCTGATCTCAAC CAATTAGGCGACAAATCCGTGACTGAATCAAGAAAATGCGTAATTATTAT ATCTGGTCTACCTACTGACTACGAGATGGAGTGCCGCATGTTGAAAAATA ACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAG TACAACAGACTTTTCAGGCAACAACAGAATTCGAAGGCCATGTCGGCATC GAAGGGCCACATCACGGTGAATCGCGGAAAGGGGGGGGACAGAAGACACC ACCCCAAACTTAACCGAAAGTGCTTCAATTGCGGAAAGAGAGGCCACTAC GCTCGGGACTGCAGAACGAGTGAGGAATCAGGGGTAACCTACACCAGGAA GGGTGGTGGCAGCGGAAAGTGTTACATCTGTGGGAGTGAGAAGCACCTTG CGCACAAGCACTGTGGGCTGTGCAAAAGCCTTGAGCACCGGACGCGGGAC TGTAGGGAGCGCGGGGCTGTAAAGGGCGAAATGCTGGAAAAACTGACTGT GCCGGCAGTCCCCGAGGTGGGGACGATAGCGGCAATAGTGGGAGCAGCTT GTGGCGATAGGAAGGAGGAATGGGAATCGGGTTCAGGCGCCACATTCCAC ATGTCGCACACCCGGGCCGGAATCTCTGCGTACAAGAAGGCGTCGCCAGG GATGACCGTTGAGATCGCCGACGGGAACACTCTACCGGTGGACGGGTTCG GAAGAATTGAGATGGATGTGGACCAACCGGGTCACACAACCAAGAGGGTG AAGATGGACGATGTTACGTATGTGCCAGGAATTTCGCGGAACCTGCTATC T
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Coding sequence (CDS) from alignment at H-elongata_contig160147:328..1278-

>mRNA_H-elongata_contig160147.3864.1 ID=mRNA_H-elongata_contig160147.3864.1|Name=mRNA_H-elongata_contig160147.3864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig160147:328..1278- (Himanthalia elongata Himel1 dioecious)
GCGTGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGAT
ACTTTGCGTGTCCCATGAAATCAACGGGAAAATAATGGAACCAGGTGGGG
AACCATTCAAATTTATGATGGAAATTGACAGGCTAGTAGCTGATCTCAAC
CAATTAGGCGACAAATCCGTGACTGAATCAAGAAAATGCGTAATTATTAT
ATCTGGTCTACCTACTGACTACGAGATGGAGTGCCGCATGTTGAAAAATA
ACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAG
TACAACAGACTTTTCAGGCAACAACAGAATTCGAAGGCCATGTCGGCATC
GAAGGGCCACATCACGGTGAATCGCGGAAAGGGGGGGGACAGAAGACACC
ACCCCAAACTTAACCGAAAGTGCTTCAATTGCGGAAAGAGAGGCCACTAC
GCTCGGGACTGCAGAACGAGTGAGGAATCAGGGGTAACCTACACCAGGAA
GGGTGGTGGCAGCGGAAAGTGTTACATCTGCGTGGCGAAATCTTGAAACA
CACTACAGAGCGAAGGGAACTAGAGAGATACTTTGCGTGTCCCATGAAAT
CAACGGGAAAATAATGGAACCAGGTGGGGAACCATTCAAATTTATGATGG
AAATTGACAGGCTAGTAGCTGATCTCAACCAATTAGGCGACAAATCCGTG
ACTGAATCAAGAAAATGCGTAATTATTATATCTGGTCTACCTACTGACTA
CGAGATGGAGTGCCGCATGTTGAAAAATAACCCTGTTGGTCTTAACAGGG
CTGAGATTGAGCGTGTCGTAGGGAATCAGTACAACAGACTTTTCAGGCAA
CAACAGAATTCGAAGGCCATGTCGGCATCGAAGGGCCACATCACGGTGAA
TCGCGGAAAGGGGGGGGACAGAAGACACCACCCCAAACTTAACCGAAAGT
GCTTCAATTGCGGAAAGAGAGGCCACTACGCTCGGGACTGCAGAACGAGT
GAGGAATCAGGGGTAACCTACACCAGGAAGGGTGGTGGCAGCGGAAAGTG
TTACATCTCTTGTGGCGATAGGAAGGAGGAATGGGAATCGGGTTCAGGCG
CCACATTCCACATGTCGCACACCCGGGCCGGAATCTCTGCGTACAAGAAG
GCGTCGCCAGGGATGACCGTTGAGATCGCCGACGGGAACACTCTACCGGT
GGACGGGTTCGGAAGAATTGAGATGGATGTGGACCAACCGGGTCACACAA
CCAAGAGGGTGAAGATGGACGATGTTACGTATGTGCCAGGAATTTCGCGG
AACCTGCTATCTCTTGTGGCGATAGGAAGGAGGAATGGGAATCGGGTTCA
GGCGCCACATTCCACATGTCGCACACCCGGGCCGGAATCTCTGCGTACAA
GAAGGCGTCGCCAGGGATGACCGTTGAGATCGCCGACGGGAACACTCTAC
CGGTGGACGGGTTCGGAAGAATTGAGATGGATGTGGACCAACCGGGTCAC
ACAACCAAGAGGGTGAAGATGGACGATGTTACGTATGTGCCAGGAATTTC
GCGGAACCTGCTATCT
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