mRNA_H-elongata_contig16011.3862.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16011.3862.1
Unique NamemRNA_H-elongata_contig16011.3862.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: D7FYJ9_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYJ9_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 5.560e-81
Identity = 146/230 (63.48%), Postives = 175/230 (76.09%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFWTTGMERKPVKRGKWGALLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLK---------GFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSWSELKGSLVLYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            SAFHM CNWLGT VYF  +G E++ +KR +W  L+ FSVVF+LNI +GN S S+VPV+FNQVMRSLVP IVMV+G Q+FGK FSRARKLAVLP+V GV +ACY +               G  VTV C++L+  K V+SGEMLTG++KMPP+ LLS M PLALVQ+ V A+A GEVS LV +W E++    LY V ITG+GSFSLNLCSLQANKVTSPLTLSIMAN+KQV
Sbjct:   63 SAFHMFCNWLGTVVYFARSGEEQQTIKRQQWPTLIMFSVVFALNISVGNTSSSMVPVTFNQVMRSLVPVIVMVIGTQVFGKTFSRARKLAVLPIVAGVIMACYPDSASDSNPEARPFRAVGVIVTVFCVMLSGLKNVVSGEMLTGDIKMPPLQLLSRMAPLALVQMAVGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNLCSLQANKVTSPLTLSIMANIKQV 292
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BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: B7GBD2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBD2_PHATC)

HSP 1 Score: 210 bits (535), Expect = 1.680e-56
Identity = 123/249 (49.40%), Postives = 167/249 (67.07%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFWTTGMERKPVKRGK------------------------WGALLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSW-SELKGSL---VLYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            SA HM CN  G+ + FW+   + +  ++                             +LAFSV+FSLNI IGN+S   V V+FNQVMRSLVPA+ + MG+ M GK  S+ R+LAV+PV+VGVA+AC+G+M+ +  GF  TV CI+LAA KVV+SGEMLTG +K+ P++LLS+M PLAL+Q V++A   GE+  + + W +EL  S+    ++VV ++GI SFSLN+CSLQANK+TSPLTL I ANVKQV
Sbjct:   44 SAIHMACNAAGSQLVFWSLDRDARQARKTMEEPSVSIFSRLLGNVTRQALDAQGQKLILAFSVIFSLNISIGNVSLQYVSVNFNQVMRSLVPALTIAMGLCM-GKVISQRRQLAVVPVIVGVAMACFGDMSYTALGFFYTVCCILLAALKVVVSGEMLTGSLKLHPVDLLSHMAPLALIQCVIIAFFTGEIQSIASRWDTELSPSVNVRPMFVVWLSGIFSFSLNICSLQANKLTSPLTLCIAANVKQV 291
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BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A7S2SVZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVZ2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.490e-56
Identity = 122/226 (53.98%), Postives = 153/226 (67.70%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFWTTGMERKPVKRGKWGA-----LLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSWSELKGSLVLYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            SA HM CN +GT VYF     ERK  KR   G      +LAFS++F+ NI IGN S   V V+FNQVMRSLVP +VMV+G Q FGK+ S  RK  ++PV++GV LAC+GEM  S  GF VT  C++LAA KVVLS  MLTGE K+ P++LLS M PLA V+++ +A   GE++ L   W EL  S  + VV I+GI SF+LN+ S  ANK+TS LTLS+ AN KQV
Sbjct:  112 SAVHMACNTIGTLVYFGVFSEERK--KRKNLGIDGQRRILAFSLIFAANIAIGNASLKYVSVNFNQVMRSLVPGVVMVIGSQFFGKSHSADRKRTLVPVIIGVMLACFGEMHFSYLGFFVTCFCVLLAAAKVVLSNVMLTGEFKLGPLDLLSRMCPLAFVEIITVAFLNGELAALAADWPELSQSKAIPVVLISGIASFTLNITSFYANKMTSALTLSVAANAKQV 335
[Close]
BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A1Z5KSE3_FISSO (TPT domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSE3_FISSO)

HSP 1 Score: 207 bits (528), Expect = 1.450e-55
Identity = 121/244 (49.59%), Postives = 165/244 (67.62%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFWT------------TGMERKPVKRGKWGA-----LLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSWS------ELKGSLVLYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            S  HM+CN++G+ + FW+            T +  K V R    A     +LAFSV+FSLNI IGN+S S V V+FNQV RSLVPAI + MG+ + GK FS+ R+LAV+P++ GVA+A +G+M+ +  GF  TV C++LAA KVV SGEMLTG +K+ P++LL++M PLALVQ +V++V  GE++ ++  W          G   + VV ++G  SFSLN+CSLQANK+TSPLTL I ANVKQV
Sbjct:   41 SVIHMLCNYIGSVLVFWSLDRTAKGSGSWVTNLLGKDVHRQTLDAKGRKLILAFSVIFSLNIAIGNVSLSYVSVNFNQVFRSLVPAITIAMGMCL-GKTFSQQRQLAVVPIIFGVAMATFGDMSYTALGFCYTVACVLLAALKVVASGEMLTGSLKLHPVDLLAHMAPLALVQCLVLSVLTGELTDIMRRWPVDLGPFSPAGVYPMLVVWLSGFLSFSLNICSLQANKLTSPLTLCIAANVKQV 283
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BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A6U0HVW1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0HVW1_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.460e-55
Identity = 112/205 (54.63%), Postives = 151/205 (73.66%), Query Frame = 2 
Query:   65 MERKPVKRGKWGALLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSWSELKGSLV----LYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            + RK V R     +L+FSV+FSLNI IGN+S   V V+FNQVMRSLVPA+ ++MG+ M  KN S+ R++AV+PVV+GVA+AC+G+M+ +  GF  TVLC++LAA KVV SGEMLTG +K+ P++LL +M PLA+VQ +V++   GEVS + + W       V    L++V  +G+ SFSLN+CSL ANK+TSPLTL I ANVKQV
Sbjct:    7 ITRKEVDRSGKKLILSFSVIFSLNIAIGNVSLRHVSVNFNQVMRSLVPAVTIIMGL-MLRKNISKNRQIAVVPVVIGVAMACFGDMSYTPLGFFYTVLCVLLAALKVVASGEMLTGNLKLHPVDLLGHMAPLAMVQCLVLSFVTGEVSSIASRWEAELNPFVHPYPLFIVVTSGVFSFSLNICSLMANKLTSPLTLCIAANVKQV 210
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BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A6V2L5N6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2L5N6_9STRA)

HSP 1 Score: 205 bits (522), Expect = 7.400e-55
Identity = 119/250 (47.60%), Postives = 165/250 (66.00%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFWTTG-------------------------MERKPVKRGKWGALLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSW-SELKGSLVLY---VVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            S  HM+CN +G+ + F +                           + RK + +     +LAFSV+FSLNI IGN+S   V V+FNQVMRSLVPAI + MGI + GKN S+ R++AVLPV++GVA+ACYG+MT +  GF  TV C++LAA KV+ SGEMLTG++K+ P++LL +M PLA+ Q + ++V  GEVS + + W +EL   + +Y   ++ ++G  SFSLN+CSL ANK+TSPLTL I ANVKQV
Sbjct:   45 SFVHMMCNSVGSMIVFRSVNSVNEGGGRKTMFTNMGGGIHNLLGNITRKEIDKAGKRKVLAFSVIFSLNIAIGNVSLRHVSVNFNQVMRSLVPAITIAMGIAL-GKNISKRRQMAVLPVIIGVAMACYGDMTFTTLGFFYTVFCVLLAALKVIASGEMLTGDLKLHPVDLLGHMAPLAMTQCLFLSVILGEVSDIASRWKTELSPFVNIYPVLIIMMSGAFSFSLNICSLMANKLTSPLTLCIAANVKQV 293
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BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A7S0F581_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F581_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.800e-53
Identity = 120/241 (49.79%), Postives = 158/241 (65.56%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFWTTGMERKPVKRGKWGA--------------------LLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSWSELKGSLVLYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            S  HM+CN +G+ + FW+    R    RG+ G                     +L FSV+FSLNI IGN+S   V V+FNQVMRSLVPAI + MG+ + G N S  R +AV+PVV+GVA+AC+G+MT +  GF  TV C+VLAA KVV SG+MLTG +K+ P++LL +M PLA+VQ +V++ A GEVS ++           L VV ++G+ SFSLN+CSL ANK+TSPLTL I ANVKQV
Sbjct:   42 SFVHMVCNSIGSQIVFWSL---RNDAVRGQSGIFQQLLGTIVRKDLDSVGKKYILWFSVIFSLNIAIGNVSLRHVSVNFNQVMRSLVPAITIAMGLCL-GTNISPKRIMAVVPVVMGVAMACFGDMTYTALGFFYTVACVVLAALKVVASGQMLTGALKLHPVDLLGHMAPLAMVQCIVLSFATGEVSSILGRPELYTDPYPLMVVLMSGLFSFSLNICSLMANKLTSPLTLCIAANVKQV 278
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BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A7S1XZK4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.310e-52
Identity = 115/221 (52.04%), Postives = 147/221 (66.52%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFWTTGMERKPVKRGKWGALLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSWSELKGSLVLYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            SA HM CN LG A Y   TGM +K V       +L FSV+F+ NI +GN S   V V+FNQ+MRSLVPAIVM M     GK FS A+  AV P+V+GVA A YG+++ +  GF +TV CI LAA KV++SG MLTG+ K+   +LLS M PL+ V + + AVA GEV+ +   W+EL     L+VV  +G+ S SLN+ S  ANKVTSPLTL+I +NVKQV
Sbjct:   58 SALHMACNALGAAAYMSITGMRQKEVDATGRRIILCFSVIFAANIAVGNASLRYVSVNFNQIMRSLVPAIVMAMNCCQ-GKRFSLAKVAAVAPIVLGVAAATYGDVSFTRLGFFMTVACICLAALKVIVSGAMLTGDYKLEAFDLLSRMAPLSFVWMTLAAVATGEVAAIRERWAELSDGYALHVVVFSGVLSVSLNISSFMANKVTSPLTLTIASNVKQV 277
[Close]
BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A7S2EE68_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE68_TRICV)

HSP 1 Score: 198 bits (503), Expect = 4.130e-52
Identity = 119/252 (47.22%), Postives = 166/252 (65.87%), Query Frame = 2 
Query:    5 SAFHMICNWLGTAVYFW--------------------TTGME-------RKPVKRGKWGALLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSW-SELKGSL---VLYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            S  HM CN++G+ + F                     T G++       R+ + RG    +LAFSV+FSLNI +GN+S   V V+FNQVMRSLVPAI +VMG+ +  K  SR R +AV+P+V+GVA+AC+G+M+ S  GF +TV C++LAA KVV SGEMLTG +K+ P++LL +M PLA++Q ++++   GE+  +   W +EL  S+    L VV ++G+ SFSLN+CSL ANK+TSPLTL I ANVKQV
Sbjct:   41 SFVHMFCNYMGSILVFQRIKAENQKRARLGQDLSSPPTGGVQGLLGSITRRKLDRGGQKMILAFSVIFSLNIAVGNVSLKYVSVNFNQVMRSLVPAITIVMGLTL-KKPISRQRIVAVIPIVIGVAMACFGDMSYSWLGFFITVGCVLLAALKVVASGEMLTGNIKLHPVDLLGHMAPLAMIQCLILSFLTGEIWSISRRWDAELNPSINPQPLSVVLLSGVFSFSLNICSLMANKLTSPLTLCIAANVKQV 291
[Close]
BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Match: A0A7S2VF30_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF30_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.960e-51
Identity = 111/206 (53.88%), Postives = 149/206 (72.33%), Query Frame = 2 
Query:   65 MERKPVKRGKWGALLAFSVVFSLNIGIGNISQSLVPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYGEMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLALVQLVVMAVAFGEVSKLVNSWSELKGSLV-----LYVVGITGIGSFSLNLCSLQANKVTSPLTLSIMANVKQV 667
            ++R+ + +     +LAFS +FSLNI IGN+S   V V+FNQVMRSLVPAI + MG+ + GK  S  R+LAVLPV++GVA+AC+G+M+ +  GF  TV+CI+LAA KVV SGEMLTG +K+ P++LL +M PLALVQ +V A   GE++ + + W +     V     L VVG +G+ SF+LN+ SLQANK+TSPLTL I ANVKQV
Sbjct:   32 IQRQTLDKSGKRLILAFSFIFSLNIAIGNVSLKYVSVNFNQVMRSLVPAITIAMGMAL-GKPTSLRRQLAVLPVIMGVAMACFGDMSYTALGFFYTVMCILLAALKVVASGEMLTGSLKLHPVDLLGHMAPLALVQCIVFAFFTGEITSIASRWEKELNPFVNIYPFLVVVG-SGVASFTLNISSLQANKLTSPLTLCIAANVKQV 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16011.3862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ9_ECTSI5.560e-8163.48TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
B7GBD2_PHATC1.680e-5649.40Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2SVZ2_9STRA3.490e-5653.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5KSE3_FISSO1.450e-5549.59TPT domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A6U0HVW1_9STRA3.460e-5554.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V2L5N6_9STRA7.400e-5547.60Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0F581_9STRA3.800e-5349.79Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1XZK4_9STRA1.310e-5252.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2EE68_TRICV4.130e-5247.22Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2VF30_9STRA2.960e-5153.88Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16011contigH-elongata_contig16011:770..7135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue9.7e-70
Seed eggNOG ortholog2880.D7FYJ9
KEGG koko:K15285
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons6
Model size3126
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16011.3862.1prot_H-elongata_contig16011.3862.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16011 3156..7119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.3725252-UTR-H-elongata_contig16011:769..23361622929940.3725252-UTR-H-elongata_contig16011:769..2336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16011 770..2336 -
1691679216.2522893-UTR-H-elongata_contig16011:769..23361691679216.2522893-UTR-H-elongata_contig16011:769..2336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16011 770..2336 -
1622929940.3850086-UTR-H-elongata_contig16011:2473..31551622929940.3850086-UTR-H-elongata_contig16011:2473..3155Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16011 2474..3155 -
1691679216.2756646-UTR-H-elongata_contig16011:2473..31551691679216.2756646-UTR-H-elongata_contig16011:2473..3155Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16011 2474..3155 -
1622929940.4618134-UTR-H-elongata_contig16011:7119..71351622929940.4618134-UTR-H-elongata_contig16011:7119..7135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16011 7120..7135 -
1691679216.330763-UTR-H-elongata_contig16011:7119..71351691679216.330763-UTR-H-elongata_contig16011:7119..7135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16011 7120..7135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.3953488-CDS-H-elongata_contig16011:3155..33431622929940.3953488-CDS-H-elongata_contig16011:3155..3343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 3156..3343 -
1691679216.2842877-CDS-H-elongata_contig16011:3155..33431691679216.2842877-CDS-H-elongata_contig16011:3155..3343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 3156..3343 -
1622929940.4078052-CDS-H-elongata_contig16011:3892..41601622929940.4078052-CDS-H-elongata_contig16011:3892..4160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 3893..4160 -
1691679216.293626-CDS-H-elongata_contig16011:3892..41601691679216.293626-CDS-H-elongata_contig16011:3892..4160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 3893..4160 -
1622929940.421908-CDS-H-elongata_contig16011:4713..48661622929940.421908-CDS-H-elongata_contig16011:4713..4866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 4714..4866 -
1691679216.30356-CDS-H-elongata_contig16011:4713..48661691679216.30356-CDS-H-elongata_contig16011:4713..4866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 4714..4866 -
1622929940.4331517-CDS-H-elongata_contig16011:5792..58731622929940.4331517-CDS-H-elongata_contig16011:5792..5873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 5793..5873 -
1691679216.3127568-CDS-H-elongata_contig16011:5792..58731691679216.3127568-CDS-H-elongata_contig16011:5792..5873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 5793..5873 -
1622929940.4463787-CDS-H-elongata_contig16011:6948..71191622929940.4463787-CDS-H-elongata_contig16011:6948..7119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 6949..7119 -
1691679216.3219137-CDS-H-elongata_contig16011:6948..71191691679216.3219137-CDS-H-elongata_contig16011:6948..7119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16011 6949..7119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16011.3862.1

>prot_H-elongata_contig16011.3862.1 ID=prot_H-elongata_contig16011.3862.1|Name=mRNA_H-elongata_contig16011.3862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
MICNWLGTAVYFWTTGMERKPVKRGKWGALLAFSVVFSLNIGIGNISQSL
VPVSFNQVMRSLVPAIVMVMGIQMFGKNFSRARKLAVLPVVVGVALACYG
EMTDSLKGFAVTVLCIVLAAFKVVLSGEMLTGEMKMPPINLLSYMTPLAL
VQLVVMAVAFGEVSKLVNSWSELKGSLVLYVVGITGIGSFSLNLCSLQAN
KVTSPLTLSIMANVKQVGSGQRQAGFTDRGQLAVPTRGAQNLVKHRGIRG
GHPCQHSIQRAEYRRAQPRNSRRGSAGGDRNKASAP*
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mRNA from alignment at H-elongata_contig16011:770..7135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16011.3862.1 ID=mRNA_H-elongata_contig16011.3862.1|Name=mRNA_H-elongata_contig16011.3862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6366bp|location=Sequence derived from alignment at H-elongata_contig16011:770..7135- (Himanthalia elongata Himel1 dioecious)
GACATCGGCGTTTCACATGATTTGTAACTGGCTGGGCACGGCCGTATATT
TTTGGACAACGGGGATGGAGAGGAAGCCGGTAAAGCGGGGGAAGTGGGGA
GCTCTGTTAGCCTTCAGTGTTGTGTTTTCGCTCAACATCGGCATCGGAAA
CATTAGCCAGTCATTGGTTCCCGTGTCCTTCAACCAGGCGAGTTTTTTGT
TTTGTTTTGCTTTTTGCCTTTTTTTGCCTTTTTTTTCTACTTGAAAAATA
TATGTACACACAATCAAGCCCTCCGAACATCCACAACCTGCCTTCTTAGT
AGAAGAAAAGTTTCATTATGACGATGACGATGGTGATACTGATAGTGATG
TGACGAGGTGTGCGACAGCGAGTGTTTCCGAGAGGTGGGCGAGTGTCGCC
TTTTTGAGGTGGGCGAATGTCGCCGTTTTGGGGTACGAATGTCGCCTTTT
TAGCCTTTTTGGTGCTCTTGAATGACCTGCGAAGAATGCACACACCGCTG
TGTCGCGTTTTTTGAAGCCCCGAGTGGGGGAAAACTAAAGGTAGCGCTAA
TAATGATGTACTTTTGAAGCGTACGGTATGGATTAGTTATGGATTAGAGA
CAGCCAGACAGCTAGACAGAAGGGTGAAAAAGTGACACGGGAAGGCGAAA
TCAAGCGTGTAGGCAGGAAAGGAAAATAAAAAAATGCACCACCTTTGGGC
AAAATAGGAAGAAACGATTTGATTGGCCATCGGCGATCGATTTTGTAAGA
ATAGTGGTCTGTCCCGTGCATGGTCACTGGCTTAACAGCCAAGGTAAGCA
ACAGCAAGACTTAGGAACGCCCTCGCCCTCCTCCCCGCTCCTCGTGACCC
CCTTGAATCGACTCCGCCTGGCTGAGGGGGCTCATTTGTCTGGCGTCTGA
GGCGTGTGTACCGTGTTAAGGGCTGCATGATGAAAATCCCGCTCTTCTGT
TGAGGTTTAGCTTGGTTTGAGTGGTGTAACGGAGAAGCTCGAGAGAAGCG
GCCACGTGTGTGTGTGTGTGTGTGCGTGTGTGTCTGATGCGCAACGTCTT
TGTGAAGTTCTCAGTCTAACTGCTAAGGAATGCTAAACCTGACGATAGCT
GGTCCCCTGGACTGTTGGTCACACATTGCAGACCCTCTAACGGTGCGAAG
AAGGCGTGGATGTTCGGAGGGTTGGAATGAGTTCGTGTTTTTAAAATAAA
AACTTGAGTATGTCCCCCGTTCCCGTGTCCTTATCTCTCGTGGTCGCGGT
CGGTTCGCGCAGGTTATGAGATCGCTCGTGCCGGCAATCGTTATGGTGAT
GGGCATCCAGATGTTCGGCAAGAATTTTTCAAGGGCAAGGAAGGTGCGGA
AGAAGCTAGAGAAGGTCGTTCGATTCGCCGATCCACCGACCGACTGACCG
ACATGAAGAATCGCCCCAGCACCCACACAACGCACCGCCGCACGCACACG
ACGCCTCGACGACTTGTGTTGAATGATTCAACGATATGGCGATATAGGGG
GGGGGGGATGATGATGATGTCCTCTAGTTCAATGGGGAGGGGCTTACTCA
TCCCGTTAATGAGGAGATGTTTAGTTCAACCAGAGGATTTATCATACATG
TCTCCAGAGGGGAGGAGTGGGGGGGGCCTCGTTCGATGCCATCCCCCTCG
ATAGATTCGTGCTTTTGTTTTTCTTCCACTGATGCGACGAGGTGGCCGTG
CCCTTCCATTAATGGACGTTGTCAGGATATATATGATGGCACAATGACCG
TGCTAAGAAGGCGTGGATGTTCGAAGGGTTTGATTGAGTTCATATGTTTT
TAAATAATAATAATAATAATATTACAGTATAACACATCGCGAAGATGGAA
ACCCGTCTCTCGTCACCCCCTCCCCCCATAATATAAACCCCCTTCCCCCC
ATAATGTAAACCCATTTTGTGGACGACAGAGGTAGCAACCCCCCCCGGCT
CTTATGTATAGGGTCCCCCGAACACCCGAGTATCAAAGTGTCGCTGTGTT
GTCGATTATATCTTGAGACAAACGGTCGAGAAAATATATCTACCCATCCC
CGTCTGTCTCACGCTATCGCCTCTCTCTATGGTATGGTATGGTATGGTAT
ACCTCTTGTAAAGATGGCCGTTCGGGTGGTGTATCCCTCGGTGGTACTTG
TGGCCGAGTCATGAGCGCGCCCTAGTCGCCTTTTCGCCCGTACAAACATG
GTTTATAAACGGCATCCTCATGGAACCTTTATCACCCTCGAATGTCTCCT
CTTCTTTCCCCCGTGGCAGCTTGCTGTGTTGCCCGTGGTGGTCGGCGTGG
CGCTCGCGTGCTACGGGGAGATGACGGACTCGTTGAAAGGGTTTGCGGTG
ACAGTGCTGTGCATCGTCCTTGCCGCGTTCAAGGTAGTCCTGTCGGGGGA
GATGCTCACCGGCGAGATGAAGGTGATATGTGTGTGTGTGTGTTATGTGA
GTATGTATATGTAAATTCGTGCGCGCGCGATGCTCGTGAGGCGAAGCGAT
CGACGCACTATTATTAGTTGAAGGAAAACGAGACGGCTAGAAAGCGCGTT
TTTTTTCGGTTTTGCTGTGAGATTTAATGCTGAAAAAATATATACTCACA
TACAAGTACACACATGCAGGCATGCTATATGTAATGCACCTACTGTTGAT
GTACCAAGCGTGGAAGCAACAACAGCTGTTAACCCTTCGAATATTTCCAG
AGCAGAAGTGGAAAGCAATATGTAATGTTTTTGAGTTGTTTTTACGATCG
CAGCGAGTGTAAATTAGTTGACGCGGTAGCTATGCCCCTCGTCAAGCTAT
TAGACTATACTAATGTAATCGTCTGAGAAGCGCTACAATGATAACATGTA
TTTGCAGGAGACGCGCACGCCGTGACAACGCCTTCGTCCTCTGAAACCCC
TGCCCGTCACTACTTCTAATATGTCTGCCCTGCCCTGTCCTGTCCTTTCA
TGTCTGCCCCCCGCGTGCACCCTAGATGCCGCCGATAAACCTTTTGTCGT
ACATGACACCGTTGGCGTTGGTTCAGCTAGTTGTCATGGCGGTTGCGTTT
GGCGAGGTATCAAAGCTCGTGAATAGCTGGTCGGAGCTCAAGGGGAGCTT
GGTGCTGTACGTGGTGGGGATCACCGGGATTGGGTCTTTCTCGTTGAACC
TGTGCAGCCTGCAGGCAAATAAAGTCACCTCCCCCCTCACGCTGAGCATC
ATGGCCAACGTCAAGCAGGTTGGTAGCGGCCAACGTCAAGCAGGTTGGTA
GCGGCCATTCCCCCGTAAACACACGAAAAATGCATTTTCCATTGAATATC
GTACACGAATGTTGCGCCGAGCGGGGTCGGAAAGCACAGCCCAGCAACGG
CTTGAGACGTATATGTACCTGAGGGGTGCTCGCGCTCCGATGTCGCTGAG
CCTTCCCCTCACGAAAGCTCTGGGATTCCCAACACGTGCTCGGAACGGCG
TTGACCCATGTTTCTGCGTCGCGGCATTGGAGCGGTGTAGAGGCAGCGTG
GAGTCCGTGCCCTGGTTGTTTGGATGCGCACGTTTGCGTGAAGAGCGCCC
CACCGACGGGGTGGAGAGAAACCGTTCACACCACTCTTTCTTTTGCAAGC
TCTTGCCTTGACTCCCTTCCTTTTGCCTGGTCTCTCCAGTGTCGCGGCGA
TCGATAAAACTTGAGACGAACAAGGGCGAAGTTCCGAACAGGCACCCTCT
TTCTCTAGGGCGAAGTTCCGAACAGGCACCCTCTTTCTCTTACCTCTTTT
TTTTTTTTTTTTTTTTTTTTTCATTTTTGCATTAACGAGCAGGTTTTACT
GATCGCGGGCAGCTCGCTGTTCCTACCCGAGGTGCACAAAACCTGGTTAA
ACATCGTGGGATTCGTGGTGGTCATCCTTGCCAGCACTCGATACAGCGTG
CTGAGTATCGCAGAGCGCAACCGCGAAATTCGCGAAGAGGATCAGCCGGT
GGAGACAGGAACAAAGCCTCTGCTCCCTAAGTAGTCGCGTTAGTCGCGTC
TCCGTAACATGCACACACGCGATTTTGATTGGCCGGACCTGCTCGGGTTG
GAACGGGGAGTGATTTCGGGGCGCGAACAGGGACTGGGTCCAATCTACGC
AGAGTAGTGGCATATCTTTCTATTCGCGTAACGAGTGGCCCGCGCGCCTT
TTTCGACAGTGGGGGATGGAGCTTGGCAACCCCACAGAGAGTAGGACATT
ATTAAGGGAGATTTGCAGCGTCGGTTGCGACAACGCTTGGGGCTTGTAGG
TCTCGAACTATTCCTTCGTTGAAAATTGAGCGACATCGTCACGACTCCGA
TAGCGGTGGAGCTTCCATCTATCCTCTAATTTGTGTTGCGCGAGCGTCCG
GCTTTGGTGGCTTTGGTGGTGCCATTGAGGTTTTATATGTTTCACGGTGG
GGTCACCGCACCCGTGACTGGTTCGCGCGTAGTAGTCCGTACATAGTACA
AATACGACCTTGATCGGGCGGACAAGATACAGAATGTTTTAATGTATGAA
GAGGTGTGGTATGGTATCGTTGATGAAAGCGTTATTGACTCTTGTAGGTA
TCCTCGTATAAAGGTGGAGCAGAAGACGACTTCTTCGCCATGATGTCAAC
GAAAATGTGTCTTGATTTGGACGCATTCGTCGCGTGGAAGGATATTTTGC
GCGGGATCTCTCTCTCTCTCTCTCTTCCCCCCGCCCTCCCCCCCCCCCCC
CCCCCCCCCCTCCCCCCCCCGCGCCCCGCCCGCGCGGTTTGCCCGTCCGT
GTGTNNNNNNNNNNTTTTTTTCGCGGGGTCTCTTTTTTTTTTTTTCTTTC
CCCCCCCCCCCCCCCCCCTCTTCCTCCTGAAGGGAAGAGGCGACCCGCGC
AAGTGTTTCGCTCGTTCTGTGGACATTTTGAGCGTATGGTGTATCGGGCC
ATGAGTCAACACCGTTTTACTGCGGCTTGTTCGGAGCGGTGGGGGTTTTA
TGATCATGGCCGTCGTGTTCCTTGACGGAAAACGGTGTGACGGTTTGTAG
CAACAAGGAGGTCCTAACATATACTAGTTTTAATCATGTTGAGCTTCCTG
TAACAAAACTGAGGTTGGGGCCTGCTGCATACAGGGTTTGTGTTTCGGCG
CTGTACGGTTAAACCATTCCGCAACTTGCGCGCCTCTGGATTTTTTTTTT
GAAATATTGTCAGTGAGGTTGCTTAGCTTTCGCTCGATTTTTGTTCGATA
GTTGTAGCAATTGAAAAGTACTCACTACACGGCGTCTTGTGCCAGGGAGG
TTCGCTGTAATCTCTCGTCGAGGTTCTTGCGCGGCAAACCATTCCGCTCG
AGATGGACGCGTGGCGTAGAGATGCGCGCGGTTGATTTTTTACCCGTACG
TGTCTCAGGTCAACGTGCCGTCTTCCCCTCTCAAGAGTCCGTTTGTTGTA
ACCTGAGCTCTGTATTAAACCATATTGTATTTGGTACTCCAGTTCCGAAG
GATTTTGTGTCCGGCCGACATGATGTCGCGGCTGCAGCGCTTCTCAACGG
TTCTAGGGAATGTTCTCAGTAAATAGGTAACTTATTTATATCCCTGTGCG
CTTAGGTATGAATCACAGGGGGTGACGTACCGTGGTCGAAAAAACACTGG
TGTATGAACTGACTGCGCGAAGTTTGCAAGTAGATTATGAATATATAGCA
GGGGGGTGAGGGGGGGGAGGTTGTCGTTTCGATTAGGTTGATGCGACGGA
GCTGTACTCTGCCTCCTTGGGCCGAGGCTCCAATAAGCGCGGCCGTCATG
TTGGTTGGAATGAGGACAGTTGAGTGGGTTACCGTGCCATACTTGCCACC
TAGTATGTGTGTCTGTACAAAGAGGCTTTTGTTTTGACAGTGGCCCGTTG
CTGCTCGTAGCAAATCCAGTACTTGAATGACGCCGACGTTTCGCCCTTTT
TTATCGCCGAAGATGTACAGTACACACATCTAATACATACACACGTGTCA
CGTGAGTGACTGACTACGTCTTGAATTACGTGGACCGACAGTGTTCCACC
TCCCATCAAGGAGGAAAAATAATTTTCTTCAAAAACATCAGAACTAACTT
GTTGAGACTACTGTATCCTGTACGCTCTAGAGGGAGTTTTTCTTGTAGAT
CTTCGAAGTGCTCCTGAGGATGATATTAAGGATTTACCTCTCGTATCGAC
GTGGGTGGGGGTATAGGAGCGTTTGAGCCACACTCTAGTCTGCGCTACGT
AGGAACTTTCTGACGAGTCGAATTGACGTATGGTGGCTGGCTGCTGCGAG
CCCCACGTGAAAGTTCCGGACGCGACCTATAGAGGCGTGTAAGTAACCGC
CGGTCTTTATAGCTATCACCAGCTTTCTGGCCCCAGCCCTGCACCATCTC
CCCGCGGTTTGTAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig16011:770..7135-

>mRNA_H-elongata_contig16011.3862.1 ID=mRNA_H-elongata_contig16011.3862.1|Name=mRNA_H-elongata_contig16011.3862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig16011:770..7135- (Himanthalia elongata Himel1 dioecious)
ATGATTTGTAACTGGCTGGGCACGGCCGTATATTTTTGGACAACGGGGAT
GGAGAGGAAGCCGGTAAAGCGGGGGAAGTGGGGAGCTCTGTTAGCCTTCA
GTGTTGTGTTTTCGCTCAACATCGGCATCGGAAACATTAGCCAGTCATTG
GTTCCCGTGTCCTTCAACCAGATGATTTGTAACTGGCTGGGCACGGCCGT
ATATTTTTGGACAACGGGGATGGAGAGGAAGCCGGTAAAGCGGGGGAAGT
GGGGAGCTCTGTTAGCCTTCAGTGTTGTGTTTTCGCTCAACATCGGCATC
GGAAACATTAGCCAGTCATTGGTTCCCGTGTCCTTCAACCAGGTTATGAG
ATCGCTCGTGCCGGCAATCGTTATGGTGATGGGCATCCAGATGTTCGGCA
AGAATTTTTCAAGGGCAAGGAAGGTTATGAGATCGCTCGTGCCGGCAATC
GTTATGGTGATGGGCATCCAGATGTTCGGCAAGAATTTTTCAAGGGCAAG
GAAGCTTGCTGTGTTGCCCGTGGTGGTCGGCGTGGCGCTCGCGTGCTACG
GGGAGATGACGGACTCGTTGAAAGGGTTTGCGGTGACAGTGCTGTGCATC
GTCCTTGCCGCGTTCAAGGTAGTCCTGTCGGGGGAGATGCTCACCGGCGA
GATGAAGCTTGCTGTGTTGCCCGTGGTGGTCGGCGTGGCGCTCGCGTGCT
ACGGGGAGATGACGGACTCGTTGAAAGGGTTTGCGGTGACAGTGCTGTGC
ATCGTCCTTGCCGCGTTCAAGGTAGTCCTGTCGGGGGAGATGCTCACCGG
CGAGATGAAGATGCCGCCGATAAACCTTTTGTCGTACATGACACCGTTGG
CGTTGGTTCAGCTAGTTGTCATGGCGGTTGCGTTTGGCGAGGTATCAAAG
CTCGTGAATAGCTGGTCGGAGCTCAAGGGGAGCTTGGTGCTGTACGTGGT
GGGGATCACCGGGATTGGGTCTTTCTCGTTGAACCTGTGCAGCCTGCAGG
CAAATAAAGTCACCTCCCCCCTCACGCTGAGCATCATGGCCAACGTCAAG
CAGGTTGGTAGCGGCCAACGTCAAGCAGATGCCGCCGATAAACCTTTTGT
CGTACATGACACCGTTGGCGTTGGTTCAGCTAGTTGTCATGGCGGTTGCG
TTTGGCGAGGTATCAAAGCTCGTGAATAGCTGGTCGGAGCTCAAGGGGAG
CTTGGTGCTGTACGTGGTGGGGATCACCGGGATTGGGTCTTTCTCGTTGA
ACCTGTGCAGCCTGCAGGCAAATAAAGTCACCTCCCCCCTCACGCTGAGC
ATCATGGCCAACGTCAAGCAGGTTGGTAGCGGCCAACGTCAAGCAGGTTT
TACTGATCGCGGGCAGCTCGCTGTTCCTACCCGAGGTGCACAAAACCTGG
TTAAACATCGTGGGATTCGTGGTGGTCATCCTTGCCAGCACTCGATACAG
CGTGCTGAGTATCGCAGAGCGCAACCGCGAAATTCGCGAAGAGGATCAGC
CGGTGGAGACAGGAACAAAGCCTCTGCTCCCTAAGTTTTACTGATCGCGG
GCAGCTCGCTGTTCCTACCCGAGGTGCACAAAACCTGGTTAAACATCGTG
GGATTCGTGGTGGTCATCCTTGCCAGCACTCGATACAGCGTGCTGAGTAT
CGCAGAGCGCAACCGCGAAATTCGCGAAGAGGATCAGCCGGTGGAGACAG
GAACAAAGCCTCTGCTCCCTAA
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