mRNA_H-elongata_contig160088.3861.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160088.3861.1
Unique NamemRNA_H-elongata_contig160088.3861.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Match: A0A2K3LIK7_TRIPR (Uncharacterized protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LIK7_TRIPR)

HSP 1 Score: 70.9 bits (172), Expect = 3.080e-12
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   16 NMSPADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERHSRMDPERARKLAFVRANLRL 228
            N++P +WWVTYGS  +P L  +A++  S+  +S+ +ERNWS YG +   + ++++P+RA  L ++  NLRL
Sbjct:  496 NLTPKEWWVTYGS-SIPKLQSIALKLFSQPTSSSSAERNWSTYGFIQSMKRNKLNPKRAEDLVYIHTNLRL 565
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BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Match: A0A2Z6P4Q2_TRISU (Uncharacterized protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4Q2_TRISU)

HSP 1 Score: 70.9 bits (172), Expect = 3.100e-12
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   16 NMSPADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERHSRMDPERARKLAFVRANLRL 228
            N++P +WWVTYGS  +P L  +A++  S+  +S+ +ERNWS YG +   + ++++P++A  L F+  NLRL
Sbjct:  534 NLTPKEWWVTYGS-SIPKLQSIALKLFSQPTSSSSAERNWSTYGFIQSTKRNKINPKKAEDLVFIHTNLRL 603
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BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Match: A0A1B5Z8H9_TRISU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A1B5Z8H9_TRISU)

HSP 1 Score: 68.9 bits (167), Expect = 9.700e-12
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   16 NMSPADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERHSRMDPERARKLAFVRANLRL 228
            N++P +WW+TYGS  +P L  +A++  S+  +S+ +ERNWS Y  +   + +R++P+RA  L FV  NLRL
Sbjct:  191 NLTPKEWWITYGS-SVPKLQSIALKLLSQPSSSSCAERNWSTYSFIHSLKRNRLNPKRAEDLVFVHTNLRL 260
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BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Match: A0A6S7NSJ8_LACSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NSJ8_LACSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.500e-8
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 LPYAQNM----SPADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERHSRMDPERARKLAFVRANLRLQRK 237
            +P A+ M    SPA+WW+ YGS   P L K AI+  S   +S+G ERNWS++  +  ++ +R++ ++   L +++ N  L+R+
Sbjct:  237 IPMAKKMRPMLSPAEWWMQYGS-SAPTLKKFAIKVLSLTCSSSGCERNWSVFEQLHSKKRNRLEWQKLNDLVYIKYNRALRRR 318
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BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Match: T1EL08_HELRO (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Helobdella robusta TaxID=6412 RepID=T1EL08_HELRO)

HSP 1 Score: 48.1 bits (113), Expect = 2.410e-5
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   25 PADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERHSRMDPERARKLAFVRANLRL 228
            PA WW  + +   P ++KVA    +  P S  SER +S  GD++ E  +R+ P+ A KL F++ N  L
Sbjct:    5 PATWW-KFNTAKYPTISKVAQVYLAPPPTSVPSERLFSTAGDIITEHRTRLLPDNAEKLIFLKYNASL 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2K3LIK7_TRIPR3.080e-1240.85Uncharacterized protein n=1 Tax=Trifolium pratense... [more]
A0A2Z6P4Q2_TRISU3.100e-1240.85Uncharacterized protein n=2 Tax=Trifolium subterra... [more]
A0A1B5Z8H9_TRISU9.700e-1242.25Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6S7NSJ8_LACSI2.500e-834.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=La... [more]
T1EL08_HELRO2.410e-536.76Dimer_Tnp_hAT domain-containing protein n=4 Tax=He... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160088contigH-elongata_contig160088:994..1281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog90675.XP_010490018.1
EggNOG OGs2C7QK@1,2QRQU@2759,37TNR@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.3164446-UTR-H-elongata_contig160088:993..10111622929940.3164446-UTR-H-elongata_contig160088:993..1011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160088 994..1011 +
1691679216.2301736-UTR-H-elongata_contig160088:993..10111691679216.2301736-UTR-H-elongata_contig160088:993..1011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160088 994..1011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.3322723-CDS-H-elongata_contig160088:1011..12811622929940.3322723-CDS-H-elongata_contig160088:1011..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160088 1012..1281 +
1691679216.2424548-CDS-H-elongata_contig160088:1011..12811691679216.2424548-CDS-H-elongata_contig160088:1011..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160088 1012..1281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160088.3861.1prot_H-elongata_contig160088.3861.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160088 1012..1281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160088.3861.1

>prot_H-elongata_contig160088.3861.1 ID=prot_H-elongata_contig160088.3861.1|Name=mRNA_H-elongata_contig160088.3861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MSPADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERH
SRMDPERARKLAFVRANLRLQRKDFTKRLFIAWDPDSVES
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mRNA from alignment at H-elongata_contig160088:994..1281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160088.3861.1 ID=mRNA_H-elongata_contig160088.3861.1|Name=mRNA_H-elongata_contig160088.3861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig160088:994..1281+ (Himanthalia elongata Himel1 dioecious)
TTGCCGTACGCCCAGAACATGTCCCCTGCAGACTGGTGGGTAACGTACGG
GAGTGTCGACCTGCCGGACTTGGCCAAAGTAGCCATTCGCACGACTTCAA
AGATACCTGCATCGGCAGGATCGGAGCGCAATTGGAGTCTGTACGGAGAT
GTCGTGGGCGAAAGGCACTCACGGATGGACCCCGAGCGTGCCAGGAAGTT
GGCGTTCGTGAGGGCTAACTTGAGGTTGCAGCGCAAAGACTTCACCAAGC
GGTTGTTCATTGCGTGGGACCCGGACTCAGTAGAGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig160088:994..1281+

>mRNA_H-elongata_contig160088.3861.1 ID=mRNA_H-elongata_contig160088.3861.1|Name=mRNA_H-elongata_contig160088.3861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig160088:994..1281+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCCTGCAGACTGGTGGGTAACGTACGGGAGTGTCGACCTGCCGGA
CTTGGCCAAAGTAGCCATTCGCACGACTTCAAAGATACCTGCATCGGCAG
GATCGGAGCGCAATTGGAGTCTGTACGGAGATGTCGTGGGCGAAAGGCAC
TCACGGATGGACCCCGAGCGTGCCAGGAAGTTGGCGTTCGTGAGGGCTAA
CTTGAGGTTGCAGCGCAAAGACTTCACCAAGCGGTTGTTCATTGCGTGGG
ACCCGGACTCAGTAGAGTCGATGTCCCCTGCAGACTGGTGGGTAACGTAC
GGGAGTGTCGACCTGCCGGACTTGGCCAAAGTAGCCATTCGCACGACTTC
AAAGATACCTGCATCGGCAGGATCGGAGCGCAATTGGAGTCTGTACGGAG
ATGTCGTGGGCGAAAGGCACTCACGGATGGACCCCGAGCGTGCCAGGAAG
TTGGCGTTCGTGAGGGCTAACTTGAGGTTGCAGCGCAAAGACTTCACCAA
GCGGTTGTTCATTGCGTGGGACCCGGACTCAGTAGAGTCG
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