mRNA_H-elongata_contig160001.3858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160001.3858.1
Unique NamemRNA_H-elongata_contig160001.3858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: D7FL61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL61_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.120e-31
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAPGLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHDD 294
            +SLLLVF+E ILPTHRSKFVQFVLFFA GRA GL +AL  +LV V  DE++PKLTRQS VAYLAS+LARASF++ S VS+AV +LL WA +Y D + D
Sbjct:  320 KSLLLVFEENILPTHRSKFVQFVLFFASGRARGLGYALVSKLVGVLGDESRPKLTRQSSVAYLASFLARASFVDPSLVSTAVQSLLDWAGQYLDQYAD 417
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A6H5JAN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.310e-31
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAPGLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHDD 294
            +SLL+VF+E ILPTHRSKFVQFVLFFA GRA GL +AL  +LV V  DE++PKLTRQS VAYLAS++ARASF++ S VS+AV +LL WA +Y D + D
Sbjct:  363 KSLLVVFEENILPTHRSKFVQFVLFFASGRARGLGYALVSKLVGVLKDESRPKLTRQSSVAYLASFVARASFVDPSLVSTAVQSLLDWAGQYLDQYAD 460
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A6P4Q5P9_GOSAR (RNA polymerase I-specific transcription initiation factor RRN3 isoform X2 n=4 Tax=Gossypium TaxID=3633 RepID=A0A6P4Q5P9_GOSAR)

HSP 1 Score: 84.7 bits (208), Expect = 5.540e-17
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 291
            ++LL  F   +L  ++SKF QFV+F+AC   P   G+R A    L D+F  +++P+ TR S V+YLASYL+RA FL AS++SS +  L+ W  EY + HD
Sbjct:  309 ETLLQSFQVTVLSAYKSKFAQFVMFYACALDPENCGMRFAT--MLADLFVQDSQPQPTRMSAVSYLASYLSRAKFLAASSISSMLKRLVDWCLEYCEAHD 406
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: UPI0010A4F4E8 (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4F4E8)

HSP 1 Score: 84.0 bits (206), Expect = 1.050e-16
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    7 LLLVFDERILPTHRSKFVQFVLFFACGRAPG---LRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 291
            LL  F + +L  ++SKF QFV+F+AC   PG   L+ A+   L D+F  E  P +TR S VAYLASYL+RA FL A+ V+S +  L+ W  EY  LHD
Sbjct:  313 LLTSFQKTVLNAYKSKFTQFVMFYACALDPGECGLKFAMV--LADMFICEVNPPITRMSAVAYLASYLSRAKFLSAALVTSILQRLVSWCYEYTMLHD 408
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A1U8NNU1_GOSHI (RNA polymerase I-specific transcription initiation factor RRN3-like n=20 Tax=Gossypium TaxID=3633 RepID=A0A1U8NNU1_GOSHI)

HSP 1 Score: 84.0 bits (206), Expect = 1.060e-16
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 291
            ++LL  F   +L  ++SKF QFV+F+AC   P   G+R A    L D+F  +++P+ TR S V+YLASYL+RA FL AS++SS +  L+ W  EY + HD
Sbjct:  309 ETLLQSFRVTVLSAYKSKFAQFVMFYACALDPENCGMRFAT--MLADLFVQDSQPQPTRMSAVSYLASYLSRAKFLAASSISSMLKRLVDWCLEYCEAHD 406
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A834TV25_9FABA (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TV25_9FABA)

HSP 1 Score: 83.6 bits (205), Expect = 1.440e-16
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    7 LLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 291
            LL  F + ++  ++SKF QFV+F+AC   P   GL+ A    L+D+F  E  P++T+ S VAYLASYL+RA FL A+ V+S +  L+ W  EY+ LHD
Sbjct:  313 LLESFQKTVINAYKSKFTQFVMFYACALDPEGCGLKFAAV--LLDMFISEVTPRITKMSAVAYLASYLSRAKFLSAALVASILQRLVSWCSEYSMLHD 408
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A6P5YHL2_DURZI (RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YHL2_DURZI)

HSP 1 Score: 82.4 bits (202), Expect = 3.660e-16
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 291
            ++LL  F   ++  ++SKF QFV+F+AC   P   G+R A+   L D+F  ++ P+ TR S VAYLASYL+RA FL AS +SS +  L+ W  EY + HD
Sbjct:  309 ETLLRSFLLTVMTAYKSKFTQFVVFYACSLDPENCGMRFAI--MLADLFVQDSHPQSTRMSSVAYLASYLSRAKFLSASFISSMLKRLVDWCLEYCNTHD 406
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A438H2L6_VITVI (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H2L6_VITVI)

HSP 1 Score: 79.0 bits (193), Expect = 4.970e-15
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 291
            ++L+L F   +L   +SKF QFV+F+AC   P   G+R A  R L D F   T P L R S VAYLASYL+R  FL AS V++ +  L+ W  EY  +HD
Sbjct:   97 ETLVLSFQTTVLNAFKSKFAQFVMFYACALDPENCGVRFA--RVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHD 194
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A2K3MYP4_TRIPR (RNA polymerase I-specific transcription initiation factor RRN3-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MYP4_TRIPR)

HSP 1 Score: 78.6 bits (192), Expect = 5.450e-15
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    7 LLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 291
            LL+ F   +L T++SKF QFV+F+AC   P   G+  A+   L ++F     P +TR S VAYLASYL+RA FL +  V+S +  L+ W   Y  LHD
Sbjct:   47 LLMSFKRTVLNTYKSKFTQFVMFYACALDPERCGVNFAMV--LTEMFESYVNPPITRMSAVAYLASYLSRAKFLSSELVASIIQRLVDWCFAYCKLHD 142
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BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: UPI000B8CF0F5 (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF0F5)

HSP 1 Score: 79.0 bits (193), Expect = 5.900e-15
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEY 276
            ++LL  F++ ++ T++SKF QF+LF+AC   P   G+R+A   +L D+F   + P +TR S VAYLASYL+R  FL AS + + +  L+ W  EY
Sbjct:  259 ETLLRSFEKYVMSTYKSKFSQFILFYACALDPEKCGVRYAT--KLADIFVCSSNPSMTRMSAVAYLASYLSRGKFLSASFIVTMLKRLVDWCLEY 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL61_ECTSI1.120e-3168.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAN6_9PHAE3.310e-3166.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P4Q5P9_GOSAR5.540e-1745.00RNA polymerase I-specific transcription initiation... [more]
UPI0010A4F4E81.050e-1647.96RNA polymerase I-specific transcription initiation... [more]
A0A1U8NNU1_GOSHI1.060e-1645.00RNA polymerase I-specific transcription initiation... [more]
A0A834TV25_9FABA1.440e-1645.92RNA polymerase I-specific transcription initiation... [more]
A0A6P5YHL2_DURZI3.660e-1645.00RNA polymerase I-specific transcription initiation... [more]
A0A438H2L6_VITVI4.970e-1546.00RNA polymerase I-specific transcription initiation... [more]
A0A2K3MYP4_TRIPR5.450e-1543.88RNA polymerase I-specific transcription initiation... [more]
UPI000B8CF0F55.900e-1543.16RNA polymerase I-specific transcription initiation... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160001contigH-elongata_contig160001:617..1384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog2880.D7FL61
Preferred nameRRN3
KEGG koko:K15216
GOsGO:0000120,GO:0000182,GO:0000976,GO:0001013,GO:0001042,GO:0001046,GO:0001047,GO:0001067,GO:0001163,GO:0001164,GO:0001167,GO:0001169,GO:0001179,GO:0001181,GO:0001188,GO:0001701,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007028,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009303,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0023051,GO:0023057,GO:0030154,GO:0030718,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036099,GO:0042254,GO:0042592,GO:0042790,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0098781,GO:0120035,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901797,GO:1902253,GO:1902254,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000026,GO:2000112,GO:2000142,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.rna polymerase i-specific transcription initiation factor
EggNOG OGsKOG2434@1,KOG2434@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_005380.1
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.0886397-CDS-H-elongata_contig160001:616..7691622929940.0886397-CDS-H-elongata_contig160001:616..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160001 617..769 -
1691679216.108393-CDS-H-elongata_contig160001:616..7691691679216.108393-CDS-H-elongata_contig160001:616..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160001 617..769 -
1622929940.1032488-CDS-H-elongata_contig160001:1225..13841622929940.1032488-CDS-H-elongata_contig160001:1225..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160001 1226..1384 -
1691679216.1256528-CDS-H-elongata_contig160001:1225..13841691679216.1256528-CDS-H-elongata_contig160001:1225..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160001 1226..1384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160001.3858.1prot_H-elongata_contig160001.3858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160001 617..1384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160001.3858.1

>prot_H-elongata_contig160001.3858.1 ID=prot_H-elongata_contig160001.3858.1|Name=mRNA_H-elongata_contig160001.3858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
QSLLLVFDERILPTHRSKFVQFVLFFACGRAPGLRHALPRRLVDVFTDET
KPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHDDVM
AMPA
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mRNA from alignment at H-elongata_contig160001:617..1384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160001.3858.1 ID=mRNA_H-elongata_contig160001.3858.1|Name=mRNA_H-elongata_contig160001.3858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig160001:617..1384- (Himanthalia elongata Himel1 dioecious)
CAGTCCCTGCTGTTGGTGTTCGACGAGAGGATCTTACCCACGCACAGGAG
CAAGTTCGTCCAGTTCGTGCTGTTTTTTGCGTGCGGGCGGGCACCCGGGC
TCAGGCACGCTCTCCCCCGCAGATTGGTTGACGTGTTCACGGATGAGACC
AAGCCCAAGGTTACAAGGGGTGGGGGGGAGGGGGTCTTGGGGTGTTACTT
CTAGGAGTATAGAACTGCTTCCGCTAAACTCGAGAGTCCAGCATGTTATT
CTGGGAGATTGTGTGATGTACTAAAGGAAAGCCGTATGATGTGGCATGAT
TGAATGGCTAGAATAAAAAAAACAATGAGCGCATCTTGTTGATTTTTCAT
TATCGTCGGCAACATGACCAAGTTCGCTCTCAGGGCGTGCGATCACGTGT
CTTGTAGTTGCATATTTTATCTCTCTTTTCTGTGTATCTTTTAAAAATAT
TGCTTTCTAAAAATTACGGCATACGGAGAGGAAATGTGGAAGCTGGTCAC
ACGTGCTCCCGCTCTCGAAAAATTGCAAAGAGCATCGACAGTACTTGAAA
TATGGGCGTATGCCTTCCTTGCCTTTCTGTCTGTTTGTGTCGTCGTGTAT
TTTTGCGTCCTCCAGCTCACGCGTCAGAGCGGGGTCGCGTACCTGGCGAG
CTACCTGGCCCGAGCGTCGTTCTTGGAGGCGTCGGCGGTTTCTAGCGCGG
TGTCGACGCTCTTACAGTGGGCAAAGGAATACGCCGACCTCCACGACGAT
GTCATGGCGATGCCAGCT
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Coding sequence (CDS) from alignment at H-elongata_contig160001:617..1384-

>mRNA_H-elongata_contig160001.3858.1 ID=mRNA_H-elongata_contig160001.3858.1|Name=mRNA_H-elongata_contig160001.3858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig160001:617..1384- (Himanthalia elongata Himel1 dioecious)
CAGTCCCTGCTGTTGGTGTTCGACGAGAGGATCTTACCCACGCACAGGAG
CAAGTTCGTCCAGTTCGTGCTGTTTTTTGCGTGCGGGCGGGCACCCGGGC
TCAGGCACGCTCTCCCCCGCAGATTGGTTGACGTGTTCACGGATGAGACC
AAGCCCAAGCAGTCCCTGCTGTTGGTGTTCGACGAGAGGATCTTACCCAC
GCACAGGAGCAAGTTCGTCCAGTTCGTGCTGTTTTTTGCGTGCGGGCGGG
CACCCGGGCTCAGGCACGCTCTCCCCCGCAGATTGGTTGACGTGTTCACG
GATGAGACCAAGCCCAAGCTCACGCGTCAGAGCGGGGTCGCGTACCTGGC
GAGCTACCTGGCCCGAGCGTCGTTCTTGGAGGCGTCGGCGGTTTCTAGCG
CGGTGTCGACGCTCTTACAGTGGGCAAAGGAATACGCCGACCTCCACGAC
GATGTCATGGCGATGCCAGCTCTCACGCGTCAGAGCGGGGTCGCGTACCT
GGCGAGCTACCTGGCCCGAGCGTCGTTCTTGGAGGCGTCGGCGGTTTCTA
GCGCGGTGTCGACGCTCTTACAGTGGGCAAAGGAATACGCCGACCTCCAC
GACGATGTCATGGCGATGCCAGCT
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