mRNA_H-elongata_contig15988.3855.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15988.3855.1
Unique NamemRNA_H-elongata_contig15988.3855.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D7FRU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU0_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.550e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  106 SWVLRTGRFSSTYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTY 276
            +W + TG   ST AI +SF+FLAY+LHP IE A  RV+AY  WR +E  + V+VTTY
Sbjct:   12 TWTMPTGGVDSTLAIGLSFIFLAYILHPAIEAAYQRVRAYHAWRCIEKQQRVDVTTY 68
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BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D8LC87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC87_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.950e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  139 TYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTYPL 282
            T+AI +SFVFLAY LHP IE    +V+A R WRAVE ++ V+VTTYP+
Sbjct:   24 TFAIGLSFVFLAYFLHPRIEATYQKVRAARAWRAVEKHKRVDVTTYPM 71
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BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: A0A6H5JST2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.100e-9
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  139 TYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTY 276
            T AI++SF+ LAYVLHP++  A  RV+AYR WRA+EN   VEVT Y
Sbjct:   34 TRAISLSFIVLAYVLHPLVIQAYHRVRAYRAWRAIENGRVVEVTAY 79
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BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D7FRU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU1_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.100e-8
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  106 SWVLRTGR-FSSTYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTYPL 282
            +WVL     F  T  I  +FV LAY LHP IE A  R++AYR WR ++  + VEVT+Y L
Sbjct:   12 TWVLPLADGFDGTLTIGWTFVLLAYFLHPAIEWAFHRLRAYRAWRCIQKRQAVEVTSYNL 71
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BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D7FRT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.940e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  139 TYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTY 276
            T AI +SF+ LAY LHP++  A  RV+AYR WRA+E    VEVT Y
Sbjct:   34 TRAIGLSFIGLAYFLHPLVVWAYHRVRAYRAWRAIEKGRAVEVTAY 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FRU0_ECTSI1.550e-1254.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC87_ECTSI7.950e-1060.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JST2_9PHAE5.100e-960.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRU1_ECTSI6.100e-848.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRT6_ECTSI2.940e-756.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15988contigH-elongata_contig15988:6229..6510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_000350.1
Exons1
Model size282
Cds size207
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.676145-UTR-H-elongata_contig15988:6228..63031622929939.676145-UTR-H-elongata_contig15988:6228..6303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15988 6229..6303 +
1691679215.942861-UTR-H-elongata_contig15988:6228..63031691679215.942861-UTR-H-elongata_contig15988:6228..6303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15988 6229..6303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.7055967-CDS-H-elongata_contig15988:6303..65101622929939.7055967-CDS-H-elongata_contig15988:6303..6510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15988 6304..6510 +
1691679215.9508545-CDS-H-elongata_contig15988:6303..65101691679215.9508545-CDS-H-elongata_contig15988:6303..6510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15988 6304..6510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15988.3855.1prot_H-elongata_contig15988.3855.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15988 6304..6510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15988.3855.1

>prot_H-elongata_contig15988.3855.1 ID=prot_H-elongata_contig15988.3855.1|Name=mRNA_H-elongata_contig15988.3855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MSTQWYTQQMSWVLRTGRFSSTYAIAVSFVFLAYVLHPVIEGALGRVKAY
RGWRAVENNETVEVTTYPL
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mRNA from alignment at H-elongata_contig15988:6229..6510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15988.3855.1 ID=mRNA_H-elongata_contig15988.3855.1|Name=mRNA_H-elongata_contig15988.3855.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig15988:6229..6510+ (Himanthalia elongata Himel1 dioecious)
TCGGGTTCATTTCAAGGTCTGTAAAGGGTTTACTGCTTCCTCAGGAAGAC
CAGGAAGACCACCTAAAGTACGGGGATGTCGACCCAGTGGTATACCCAAC
AGATGTCGTGGGTACTCAGAACAGGACGCTTCAGCAGCACCTATGCCATC
GCAGTGTCATTCGTGTTCCTAGCCTACGTTTTGCACCCTGTCATCGAAGG
CGCGTTGGGGAGGGTGAAGGCTTACCGTGGGTGGCGCGCAGTCGAAAATA
ATGAAACGGTAGAAGTTACCACCTATCCCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig15988:6229..6510+

>mRNA_H-elongata_contig15988.3855.1 ID=mRNA_H-elongata_contig15988.3855.1|Name=mRNA_H-elongata_contig15988.3855.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig15988:6229..6510+ (Himanthalia elongata Himel1 dioecious)
ATGTCGACCCAGTGGTATACCCAACAGATGTCGTGGGTACTCAGAACAGG
ACGCTTCAGCAGCACCTATGCCATCGCAGTGTCATTCGTGTTCCTAGCCT
ACGTTTTGCACCCTGTCATCGAAGGCGCGTTGGGGAGGGTGAAGGCTTAC
CGTGGGTGGCGCGCAGTCGAAAATAATGAAACGGTAGAAGTTACCACCTA
TCCCCTAATGTCGACCCAGTGGTATACCCAACAGATGTCGTGGGTACTCA
GAACAGGACGCTTCAGCAGCACCTATGCCATCGCAGTGTCATTCGTGTTC
CTAGCCTACGTTTTGCACCCTGTCATCGAAGGCGCGTTGGGGAGGGTGAA
GGCTTACCGTGGGTGGCGCGCAGTCGAAAATAATGAAACGGTAGAAGTTA
CCACCTATCCCCTA
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