mRNA_H-elongata_contig159870.3854.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159870.3854.1
Unique NamemRNA_H-elongata_contig159870.3854.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig159870.3854.1 vs. uniprot
Match: D8LTR5_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR5_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.050e-22
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 QQQYMAVLRIGTQEVRSRYA-RADGNPAWREKLMLCWDGNMPLNLDVYGGKEHIGQ 165
            Q QYMAVLRIG QEVRS+++ R+DG+P+W EKLMLCWDGNMPLN+D+YGGK+HIGQ
Sbjct:  331 QLQYMAVLRIGGQEVRSKWSKRSDGSPSWSEKLMLCWDGNMPLNIDIYGGKDHIGQ 386
[Close]
BLAST of mRNA_H-elongata_contig159870.3854.1 vs. uniprot
Match: A0A6H5L6N3_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-17
Identity = 34/46 (73.91%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   31 GTQEVRSRYAR-ADGNPAWREKLMLCWDGNMPLNLDVYGGKEHIGQ 165
            G QEVRS++++ +DG+P+W EKLMLCWDGNMPLN+DVYGGK+HIGQ
Sbjct:  371 GGQEVRSKWSKKSDGSPSWSEKLMLCWDGNMPLNIDVYGGKDHIGQ 416
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159870.3854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTR5_ECTSI1.050e-2276.79Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L6N3_9PHAE3.710e-1773.91Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159870contigH-elongata_contig159870:343..1206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue2.9e-17
Seed eggNOG ortholog2880.D8LTR5
KEGG koko:K12486
KEGG Pathwayko04144,map04144
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0703@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionArf GTPase activating protein
Ec32 orthologEc-28_003110.1
Exons2
Model size165
Cds size153
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159870.3854.1prot_H-elongata_contig159870.3854.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159870 355..1206 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.5821779-UTR-H-elongata_contig159870:342..3541622929939.5821779-UTR-H-elongata_contig159870:342..354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159870 343..354 +
1691679215.914014-UTR-H-elongata_contig159870:342..3541691679215.914014-UTR-H-elongata_contig159870:342..354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159870 343..354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.5991201-CDS-H-elongata_contig159870:354..3841622929939.5991201-CDS-H-elongata_contig159870:354..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159870 355..384 +
1691679215.9273338-CDS-H-elongata_contig159870:354..3841691679215.9273338-CDS-H-elongata_contig159870:354..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159870 355..384 +
1622929939.616566-CDS-H-elongata_contig159870:1083..12061622929939.616566-CDS-H-elongata_contig159870:1083..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159870 1084..1206 +
1691679215.9347572-CDS-H-elongata_contig159870:1083..12061691679215.9347572-CDS-H-elongata_contig159870:1083..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159870 1084..1206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159870.3854.1

>prot_H-elongata_contig159870.3854.1 ID=prot_H-elongata_contig159870.3854.1|Name=mRNA_H-elongata_contig159870.3854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MAVLRIGTQEVRSRYARADGNPAWREKLMLCWDGNMPLNLDVYGGKEHIG
Q
back to top

mRNA from alignment at H-elongata_contig159870:343..1206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159870.3854.1 ID=mRNA_H-elongata_contig159870.3854.1|Name=mRNA_H-elongata_contig159870.3854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig159870:343..1206+ (Himanthalia elongata Himel1 dioecious)
CAGCAACAATACATGGCTGTCCTCCGAATAGGAACTCAGGAGGTAAGATA
TAAAAACGAAACTTAGATCTATTGATAATTAATTGATTTATGTTGCCTTC
TATAATTAGCATAATACTAAAGCTATACTACAGCATAGCTTGAGGATCGG
GGAATGTGTAGCGGAAGGTGCGATAGGATCGCCGCAGTCACTCCCGCGGA
AAATTCGTGCGGAGCGCGGCGAAGAAGGCCCCGCCTCACTACGCCCGAGG
TGTTTGTGTNNNNNNNNNNGGGGGGGGGGGGGTGGGGTTCATAAGTTTCA
TCAAAATCTTTATGTGCAAATATTTTCCCTTGGGGAGGCTTGTGATTCAA
AATCGCGCCACGCTTGTAGATAAGATAAGCGCTGATCTCGCATCTATCTC
CTGCCTACCTTCATATCAAATTTTGATTTTGATGAATCATTTCAACTAAA
GTAATTAAAATGTAGTTTTCATTTTAATATATTATTTTTATTTCATTTTA
ATTACATTTAATAGTAAATATAAAATCATTTGACTTTTTTACTTTCTCTA
AGTTTTTATCTAGTAGATCATATGTGAAGAAAATAATACAGTATAAGTTA
TTTAAAAAAAAAAAAGATTTTTATTGTAGATATTTAACGAATTTTCTGTG
TCTTTCCTCGTTTTTCTTTTTTCTTTTTTCTTTTTTCTTCTTCCCCTTTT
TGTTGTTTTCATTTCCACGTGGTTACGATCACGGCGTTAAGGTCCGGTCT
AGGTATGCGAGGGCAGACGGTAACCCGGCCTGGAGAGAGAAGCTGATGTT
GTGCTGGGACGGCAACATGCCTCTCAACCTCGACGTCTACGGCGGGAAGG
AACACATCGGACAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig159870:343..1206+

>mRNA_H-elongata_contig159870.3854.1 ID=mRNA_H-elongata_contig159870.3854.1|Name=mRNA_H-elongata_contig159870.3854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig159870:343..1206+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTCCTCCGAATAGGAACTCAGGAGATGGCTGTCCTCCGAATAGG
AACTCAGGAGGTCCGGTCTAGGTATGCGAGGGCAGACGGTAACCCGGCCT
GGAGAGAGAAGCTGATGTTGTGCTGGGACGGCAACATGCCTCTCAACCTC
GACGTCTACGGCGGGAAGGAACACATCGGACAGGTCCGGTCTAGGTATGC
GAGGGCAGACGGTAACCCGGCCTGGAGAGAGAAGCTGATGTTGTGCTGGG
ACGGCAACATGCCTCTCAACCTCGACGTCTACGGCGGGAAGGAACACATC
GGACAG
back to top