mRNA_H-elongata_contig15978.3848.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15978.3848.1
Unique NamemRNA_H-elongata_contig15978.3848.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: D8LEN9_ECTSI (Membrane acyl-CoA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 7.480e-25
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   25 EMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            ++CE LLRRGADVNHRN RGNT LHYAMAYD  G +GEML + GGDDTV N+DGL+CY+GL
Sbjct: 2706 QLCEMLLRRGADVNHRNGRGNTPLHYAMAYDTQGVLGEMLISRGGDDTVTNRDGLSCYDGL 2766
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BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A482SPW6_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPW6_9ARCH)

HSP 1 Score: 87.8 bits (216), Expect = 6.600e-21
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            ++ QN +  + E L+ RGA +NH+NS+GNTALHYA+A+DP GA+GE L   G DDT+ N +GLT Y+G+
Sbjct:   44 VAAQNSNKRLAEMLILRGASINHQNSQGNTALHYALAFDPEGALGEYLIEHGADDTLENVEGLTAYDGV 112
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BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A6V1RC66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RC66_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 2.060e-20
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            ++ QN +  MCE LL RGA VNH+N+ GNTALH+AM YDP G +GE L   G DD + N  GLT Y+G+
Sbjct:   74 VAAQNLNRRMCELLLARGASVNHQNAVGNTALHFAMTYDPEGTLGEFLIMHGADDGIENGQGLTAYDGI 142
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BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A7S2RQ58_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ58_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.420e-20
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            +  QNC+ ++ E ++ RGA++NH+N+ GNTALH+AMAYD  G +GE+L   G DDT+ N  GLT Y+G+
Sbjct:   63 IGAQNCNKKLMELVIHRGANINHQNASGNTALHFAMAYDMEGTLGELLIQKGADDTIENAAGLTPYDGI 131
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BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A7S4ECN9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECN9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.390e-19
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   10 QNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            QN +++MCE L+ R  DVNHRNS GNTALH+AMAYD  G + E L   G DDT+ N  G TCY+GL
Sbjct:  788 QNLNLKMCEMLINRNCDVNHRNSSGNTALHFAMAYDSEGTLAEYLIQQGADDTIENAVGCTCYDGL 853
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BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A6V1RC42_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RC42_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.800e-19
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            ++ QN +  MCE LL RGA VNH+N+ GNTALH+AM YDP G +GE L   G DD + N  GLT Y+G+
Sbjct:  173 VAAQNLNRRMCELLLARGASVNHQNAVGNTALHFAMTYDPEGTLGEFLIMHGADDGIENGQGLTAYDGI 241
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BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A7S3LK43_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LK43_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.190e-19
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            ++ QN +  +C+ LL RGA++NH+NS+GNTA+HYAM+YDP G +GE L   G DDT+ N+ GL+ Y+G+
Sbjct:  230 IAAQNLNKRICDLLLNRGANINHQNSQGNTAMHYAMSYDPEGTLGEFLIGRGADDTLENQLGLSPYDGI 298
[Close]
BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A7S1UK14_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK14_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.970e-19
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            +++Q  + ++   L+ RGAD+NH+N+ GNTALHYAMAYDP G +GE L   G DD++ N  GL+CY+GL
Sbjct:  154 VAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGL 222
[Close]
BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: A0A7S1Y181_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y181_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.880e-18
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            +++Q  + ++   L+ RGAD+NH+N+ GNTALHYAMAYDP G +GE L   G DD++ N  GL+CY+GL
Sbjct:  543 VAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGL 611
[Close]
BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Match: K3WQ57_GLOUD (SAM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ57_GLOUD)

HSP 1 Score: 85.5 bits (210), Expect = 8.070e-18
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 LSLQNCDMEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTVINKDGLTCYEGL 207
            ++ QN +M+M E LL + A+VNHRN++GNT LH+AMAYD  GA+GE L   G DDT+ N  GLT Y+GL
Sbjct: 2265 IACQNVNMKMVEYLLAKRANVNHRNTQGNTPLHFAMAYDADGALGEYLIARGADDTIENVFGLTPYDGL 2333
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15978.3848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEN9_ECTSI7.480e-2573.77Membrane acyl-CoA binding protein n=1 Tax=Ectocarp... [more]
A0A482SPW6_9ARCH6.600e-2153.62Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
A0A6V1RC66_HETAK2.060e-2055.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RQ58_9STRA4.420e-2050.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4ECN9_9STRA1.390e-1959.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V1RC42_HETAK1.800e-1955.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3LK43_9STRA2.190e-1952.17Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1UK14_9STRA6.970e-1952.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1Y181_9STRA7.880e-1852.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K3WQ57_GLOUD8.070e-1856.52SAM domain-containing protein n=1 Tax=Globisporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15978contigH-elongata_contig15978:346..555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog2880.D8LEN9
KEGG koko:K10408,ko:K10413
KEGG Pathwayko04145,ko04962,ko05016,ko05132,map04145,map04962,map05016,map05132
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size189
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.0992122-UTR-H-elongata_contig15978:345..3661622929939.0992122-UTR-H-elongata_contig15978:345..366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15978 346..366 +
1691679215.730339-UTR-H-elongata_contig15978:345..3661691679215.730339-UTR-H-elongata_contig15978:345..366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15978 346..366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.1482375-CDS-H-elongata_contig15978:366..5551622929939.1482375-CDS-H-elongata_contig15978:366..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15978 367..555 +
1691679215.740978-CDS-H-elongata_contig15978:366..5551691679215.740978-CDS-H-elongata_contig15978:366..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15978 367..555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15978.3848.1prot_H-elongata_contig15978.3848.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15978 367..555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15978.3848.1

>prot_H-elongata_contig15978.3848.1 ID=prot_H-elongata_contig15978.3848.1|Name=mRNA_H-elongata_contig15978.3848.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MEMCEALLRRGADVNHRNSRGNTALHYAMAYDPGGAIGEMLTTTGGDDTV
INKDGLTCYEGL*
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mRNA from alignment at H-elongata_contig15978:346..555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15978.3848.1 ID=mRNA_H-elongata_contig15978.3848.1|Name=mRNA_H-elongata_contig15978.3848.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig15978:346..555+ (Himanthalia elongata Himel1 dioecious)
CTCTCTCTTCAGAACTGCGACATGGAGATGTGCGAGGCGTTACTCCGTCG
CGGAGCGGACGTCAACCATCGAAACTCTCGCGGCAACACGGCCTTGCACT
ATGCGATGGCGTACGACCCGGGGGGCGCCATCGGAGAAATGCTCACGACG
ACGGGTGGAGACGACACAGTTATCAACAAGGATGGTCTCACTTGTTACGA
AGGACTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig15978:346..555+

>mRNA_H-elongata_contig15978.3848.1 ID=mRNA_H-elongata_contig15978.3848.1|Name=mRNA_H-elongata_contig15978.3848.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig15978:346..555+ (Himanthalia elongata Himel1 dioecious)
ATGGAGATGTGCGAGGCGTTACTCCGTCGCGGAGCGGACGTCAACCATCG
AAACTCTCGCGGCAACACGGCCTTGCACTATGCGATGGCGTACGACCCGG
GGGGCGCCATCGGAGAAATGCTCACGACGACGGGTGGAGACGACACAGTT
ATCAACAAGGATGGTCTCACTTGTTACGAAGGACTATAGATGGAGATGTG
CGAGGCGTTACTCCGTCGCGGAGCGGACGTCAACCATCGAAACTCTCGCG
GCAACACGGCCTTGCACTATGCGATGGCGTACGACCCGGGGGGCGCCATC
GGAGAAATGCTCACGACGACGGGTGGAGACGACACAGTTATCAACAAGGA
TGGTCTCACTTGTTACGAAGGACTATAG
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