mRNA_H-elongata_contig159718.3847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159718.3847.1
Unique NamemRNA_H-elongata_contig159718.3847.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159718.3847.1 vs. uniprot
Match: D7FPH1_ECTSI (Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.030e-12
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    7 VMRHCLDEPQDRMETLETEYARVQGNYDRVAKRFGEDPTKVPSGEFFSLMSV 162
            V+   L++ + +ME+LE EY RVQG+Y+  AKRFGEDPTKVPSG+FF+L+S 
Sbjct: 1026 VVEPFLEKAKSQMESLEAEYERVQGDYNNAAKRFGEDPTKVPSGDFFALVSA 1077
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159718.3847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPH1_ECTSI5.030e-1259.62Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159718contigH-elongata_contig159718:442..603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue9.9e-10
Seed eggNOG ortholog2880.D7FPH1
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.032199-CDS-H-elongata_contig159718:441..5941622929939.032199-CDS-H-elongata_contig159718:441..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159718 442..594 -
1691679215.7053757-CDS-H-elongata_contig159718:441..5941691679215.7053757-CDS-H-elongata_contig159718:441..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159718 442..594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.0482092-UTR-H-elongata_contig159718:594..6031622929939.0482092-UTR-H-elongata_contig159718:594..603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159718 595..603 -
1691679215.7186778-UTR-H-elongata_contig159718:594..6031691679215.7186778-UTR-H-elongata_contig159718:594..603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159718 595..603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159718.3847.1prot_H-elongata_contig159718.3847.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159718 442..594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159718.3847.1

>prot_H-elongata_contig159718.3847.1 ID=prot_H-elongata_contig159718.3847.1|Name=mRNA_H-elongata_contig159718.3847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MRHCLDEPQDRMETLETEYARVQGNYDRVAKRFGEDPTKVPSGEFFSLMS
V
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mRNA from alignment at H-elongata_contig159718:442..603-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159718.3847.1 ID=mRNA_H-elongata_contig159718.3847.1|Name=mRNA_H-elongata_contig159718.3847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig159718:442..603- (Himanthalia elongata Himel1 dioecious)
TTACGGGTAATGCGTCATTGCCTTGATGAACCACAGGACCGAATGGAGAC
GCTAGAGACGGAGTACGCCCGGGTGCAGGGGAACTACGATAGGGTGGCAA
AGCGATTCGGGGAGGACCCCACGAAGGTTCCCAGTGGGGAATTCTTCTCC
CTGATGTCGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig159718:442..603-

>mRNA_H-elongata_contig159718.3847.1 ID=mRNA_H-elongata_contig159718.3847.1|Name=mRNA_H-elongata_contig159718.3847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig159718:442..603- (Himanthalia elongata Himel1 dioecious)
ATGCGTCATTGCCTTGATGAACCACAGGACCGAATGGAGACGCTAGAGAC
GGAGTACGCCCGGGTGCAGGGGAACTACGATAGGGTGGCAAAGCGATTCG
GGGAGGACCCCACGAAGGTTCCCAGTGGGGAATTCTTCTCCCTGATGTCG
GTAATGCGTCATTGCCTTGATGAACCACAGGACCGAATGGAGACGCTAGA
GACGGAGTACGCCCGGGTGCAGGGGAACTACGATAGGGTGGCAAAGCGAT
TCGGGGAGGACCCCACGAAGGTTCCCAGTGGGGAATTCTTCTCCCTGATG
TCGGTA
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