mRNA_H-elongata_contig159661.3845.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159661.3845.1
Unique NamemRNA_H-elongata_contig159661.3845.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159661.3845.1 vs. uniprot
Match: D7FP24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP24_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.470e-10
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 EQIERSLDVWASDPRYHAVNAFCSEGGAPPIVLGEWLPNG 120
            +Q ER+L++ ++DPR   +N FCS  GAPP VLGEWLPNG
Sbjct:   72 DQTERALELLSADPRCRTLNDFCSSDGAPPTVLGEWLPNG 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159661.3845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP24_ECTSI4.470e-1060.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159661contigH-elongata_contig159661:1199..1321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.8895414-CDS-H-elongata_contig159661:1198..13211622929938.8895414-CDS-H-elongata_contig159661:1198..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159661 1199..1321 +
1691679215.6462958-CDS-H-elongata_contig159661:1198..13211691679215.6462958-CDS-H-elongata_contig159661:1198..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159661 1199..1321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159661.3845.1prot_H-elongata_contig159661.3845.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159661 1199..1321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159661.3845.1

>prot_H-elongata_contig159661.3845.1 ID=prot_H-elongata_contig159661.3845.1|Name=mRNA_H-elongata_contig159661.3845.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
EQIERSLDVWASDPRYHAVNAFCSEGGAPPIVLGEWLPNG*
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mRNA from alignment at H-elongata_contig159661:1199..1321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159661.3845.1 ID=mRNA_H-elongata_contig159661.3845.1|Name=mRNA_H-elongata_contig159661.3845.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig159661:1199..1321+ (Himanthalia elongata Himel1 dioecious)
GAGCAAATCGAGCGCTCCCTGGACGTCTGGGCTAGCGACCCTCGTTACCA
TGCCGTGAACGCCTTTTGCTCGGAGGGCGGGGCTCCGCCGATCGTCCTCG
GGGAATGGCTGCCGAATGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig159661:1199..1321+

>mRNA_H-elongata_contig159661.3845.1 ID=mRNA_H-elongata_contig159661.3845.1|Name=mRNA_H-elongata_contig159661.3845.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig159661:1199..1321+ (Himanthalia elongata Himel1 dioecious)
GAGCAAATCGAGCGCTCCCTGGACGTCTGGGCTAGCGACCCTCGTTACCA
TGCCGTGAACGCCTTTTGCTCGGAGGGCGGGGCTCCGCCGATCGTCCTCG
GGGAATGGCTGCCGAATGGGTGAGAGCAAATCGAGCGCTCCCTGGACGTC
TGGGCTAGCGACCCTCGTTACCATGCCGTGAACGCCTTTTGCTCGGAGGG
CGGGGCTCCGCCGATCGTCCTCGGGGAATGGCTGCCGAATGGGTGA
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