mRNA_H-elongata_contig159583.3840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159583.3840.1
Unique NamemRNA_H-elongata_contig159583.3840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: D7FMY2_ECTSI (Hydroxymethylbilane synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY2_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.960e-32
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSVIGSASLRRQAQLL  NP+FKV+NFRGNVQTRLRKLDE++VDATLLA+AGLKRL++A VATSVLDQD  L
Sbjct:  178 DGSVIGSASLRRQAQLLRANPTFKVVNFRGNVQTRLRKLDEEIVDATLLAFAGLKRLEMAQVATSVLDQDAML 250
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BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: A0A7S2XXR7_9STRA (Hydroxymethylbilane synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.920e-28
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSV+GSASLRRQAQLL KNP+ KV+NFRGNVQTRLRKLDE +VDATLLA AGL+R+D+A VAT VL+ D  L
Sbjct:  162 DGSVVGSASLRRQAQLLAKNPTLKVVNFRGNVQTRLRKLDEGIVDATLLAIAGLRRMDMADVATCVLEMDEML 234
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BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: A0A835YJY2_9STRA (Hydroxymethylbilane synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJY2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.680e-28
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    4 GSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            G+VIGSASLRRQ+Q+L K P  KV+NFRGNVQTRLRKLDE+VVDAT+LAYAGLKRL++AHVAT VL+ D  L
Sbjct:  164 GAVIGSASLRRQSQILAKRPDLKVVNFRGNVQTRLRKLDEEVVDATMLAYAGLKRLNMAHVATHVLEMDQML 235
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BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: A0A6S9LNX4_HETAK (Hydroxymethylbilane synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LNX4_HETAK)

HSP 1 Score: 112 bits (279), Expect = 7.900e-28
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSVIGSASLRRQAQLL KNP+ KV+NFRGNVQTRLRKLDE VVDATLLA AGLKR+D+  VAT VL+ D  L
Sbjct:  162 DGSVIGSASLRRQAQLLAKNPTLKVVNFRGNVQTRLRKLDEGVVDATLLALAGLKRMDMDDVATKVLEFDEML 234
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BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: A0A7S0BTS6_9RHOD (Hydroxymethylbilane synthase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BTS6_9RHOD)

HSP 1 Score: 105 bits (261), Expect = 8.230e-27
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSVIGSASLRRQAQ+L KNP+ KV+NFRGNVQTRLRKL E  VDAT+LAYAGL R+D+    T VLD D  L
Sbjct:   43 DGSVIGSASLRRQAQILAKNPNLKVVNFRGNVQTRLRKLKEGQVDATMLAYAGLARMDMTENVTKVLDWDEML 115
[Close]
BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: A0A7S2SQX8_9STRA (Hydroxymethylbilane synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQX8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.840e-26
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSVIGSASLRRQAQ+  KNP+ KV+NFRGNVQTRLRKLD+  VDATLLAYAGLKR+D+   ATS+++ D  L
Sbjct:  162 DGSVIGSASLRRQAQIQAKNPTLKVVNFRGNVQTRLRKLDDGEVDATLLAYAGLKRMDMTEFATSIIEWDEML 234
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BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: A0A7R9YAK2_9STRA (Hydroxymethylbilane synthase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAK2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.140e-26
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQD 210
            DGS++GSASLRRQAQ+L  NP+ KV+NFRGNVQTRLRKL+E VVDATLLA AGL R+D++HVATSVL+ +
Sbjct:  174 DGSLVGSASLRRQAQILAINPTLKVVNFRGNVQTRLRKLNEGVVDATLLALAGLNRMDMSHVATSVLEYE 243
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BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: F0YAX4_AURAN (Hydroxymethylbilane synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAX4_AURAN)

HSP 1 Score: 107 bits (267), Expect = 3.090e-26
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSVIGSASLRRQ+Q+L  NP+ K +NFRGNVQTRLRKLDE VVDATLLAYAGLKR+D+A   T+VL+ D  L
Sbjct:  140 DGSVIGSASLRRQSQILAINPTLKCVNFRGNVQTRLRKLDEGVVDATLLAYAGLKRMDMADEVTAVLEWDEML 212
[Close]
BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: B7FWY2_PHATC (Hydroxymethylbilane synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWY2_PHATC)

HSP 1 Score: 106 bits (264), Expect = 7.990e-26
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSVIG+ASLRRQAQL+ KNP+ K +NFRGNVQTRLRKLD+ VVDATLLA AGLKR+D+   ATS+L+ D  L
Sbjct:  130 DGSVIGTASLRRQAQLMAKNPTLKCVNFRGNVQTRLRKLDDGVVDATLLAIAGLKRMDMDGCATSILEWDEML 202
[Close]
BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Match: A0A7S2F873_9STRA (Hydroxymethylbilane synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F873_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.070e-25
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    1 DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLAYAGLKRLDLAHVATSVLDQDVRL 219
            DGSVIGSASLRRQAQ+L KNP+ KV+NFRGNVQTRLRKLD+  VDATLLA AGLKR+D+    TS L+Q+  L
Sbjct:  178 DGSVIGSASLRRQAQILAKNPTLKVVNFRGNVQTRLRKLDDGEVDATLLALAGLKRMDMTEFITSTLEQEEML 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159583.3840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMY2_ECTSI2.960e-3283.56Hydroxymethylbilane synthase n=2 Tax=Ectocarpus Ta... [more]
A0A7S2XXR7_9STRA1.920e-2876.71Hydroxymethylbilane synthase (Fragment) n=1 Tax=Fi... [more]
A0A835YJY2_9STRA4.680e-2876.39Hydroxymethylbilane synthase n=1 Tax=Tribonema min... [more]
A0A6S9LNX4_HETAK7.900e-2879.45Hydroxymethylbilane synthase n=1 Tax=Heterosigma a... [more]
A0A7S0BTS6_9RHOD8.230e-2772.60Hydroxymethylbilane synthase (Fragment) n=1 Tax=Rh... [more]
A0A7S2SQX8_9STRA1.840e-2672.60Hydroxymethylbilane synthase n=1 Tax=Rhizochromuli... [more]
A0A7R9YAK2_9STRA2.140e-2674.29Hydroxymethylbilane synthase (Fragment) n=1 Tax=Pi... [more]
F0YAX4_AURAN3.090e-2673.97Hydroxymethylbilane synthase n=1 Tax=Aureococcus a... [more]
B7FWY2_PHATC7.990e-2672.60Hydroxymethylbilane synthase n=2 Tax=Phaeodactylum... [more]
A0A7S2F873_9STRA1.070e-2572.60Hydroxymethylbilane synthase n=1 Tax=Dictyocha spe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159583contigH-elongata_contig159583:458..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.2e-26
Seed eggNOG ortholog2880.D7FMY2
Preferred nameHEMC
KEGG rclassRC02317
KEGG koko:K01749
KEGG ReactionR00084
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
GOsGO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009451,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0071704,GO:0090304,GO:0098542,GO:1900865,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.porphobilinogen deaminase
EggNOG OGsCOG0181@1,KOG2892@2759
EC2.5.1.61
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.4515433-CDS-H-elongata_contig159583:457..5931622929938.4515433-CDS-H-elongata_contig159583:457..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159583 458..593 +
1691679215.4358485-CDS-H-elongata_contig159583:457..5931691679215.4358485-CDS-H-elongata_contig159583:457..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159583 458..593 +
1622929938.464917-CDS-H-elongata_contig159583:1066..11791622929938.464917-CDS-H-elongata_contig159583:1066..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159583 1067..1179 +
1691679215.4501762-CDS-H-elongata_contig159583:1066..11791691679215.4501762-CDS-H-elongata_contig159583:1066..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159583 1067..1179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159583.3840.1prot_H-elongata_contig159583.3840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159583 458..1179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159583.3840.1

>prot_H-elongata_contig159583.3840.1 ID=prot_H-elongata_contig159583.3840.1|Name=mRNA_H-elongata_contig159583.3840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
DGSVIGSASLRRQAQLLNKNPSFKVINFRGNVQTRLRKLDEDVVDATLLA
YAGLKRLDLAHVATSVLDQDVRLHGMIWDGIE*
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mRNA from alignment at H-elongata_contig159583:458..1179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159583.3840.1 ID=mRNA_H-elongata_contig159583.3840.1|Name=mRNA_H-elongata_contig159583.3840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig159583:458..1179+ (Himanthalia elongata Himel1 dioecious)
GATGGATCAGTGATCGGATCCGCGTCGTTGCGGCGCCAGGCGCAGCTCCT
CAACAAGAACCCCTCCTTTAAGGTCATCAACTTCCGAGGGAACGTCCAGA
CTCGCCTCAGGAAACTCGACGAGGACGTCGTCGATGGTGATTACTTGCCC
CCACCCGCCCCCCCTCCAGCTTATCGCTCCGTCCCGGCATTGCTATGTAG
GATGCGTCGTCGATGTCCGTTACAAAACTATATGCTTTTATAATAAGTAC
ATACCACCCCCTGCCCTTGTTGGCACCTCTCAGCATGGAAACCCTTCGTC
TTACGTCGTACTCTCCGCCTCCACTCCACGTCTTGTTATGTTGTGCGTTA
AATATGGTTTGCAGTCTCTTTCTGAATGAAATGAAGAAGGCCCATGTATT
TTGTCGCCATGACGGAGTCGTACTCGTAATTATCTCGTAGCCATCCTTTC
TCTCACAGCGGCATACCTTGCGGATTTGCCGTTGGAAGTTTTCCGGCGGT
ATCGACTGTCGCTAGGTCCCCCTCCCTTTTTAAGGTTCCCGATATGACGA
AGAAAATATCCCTGCCGTTTCTTTGGAAAACCTTCCTTCCACGTTTTTGG
GCGGCACAGCCACCCTTCTGGCGTACGCTGGGCTCAAGCGACTGGACTTG
GCGCACGTGGCCACCTCTGTGCTGGACCAAGACGTGCGTCTTCACGGGAT
GATATGGGATGGGATAGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig159583:458..1179+

>mRNA_H-elongata_contig159583.3840.1 ID=mRNA_H-elongata_contig159583.3840.1|Name=mRNA_H-elongata_contig159583.3840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig159583:458..1179+ (Himanthalia elongata Himel1 dioecious)
GATGGATCAGTGATCGGATCCGCGTCGTTGCGGCGCCAGGCGCAGCTCCT
CAACAAGAACCCCTCCTTTAAGGTCATCAACTTCCGAGGGAACGTCCAGA
CTCGCCTCAGGAAACTCGACGAGGACGTCGTCGATGGATGGATCAGTGAT
CGGATCCGCGTCGTTGCGGCGCCAGGCGCAGCTCCTCAACAAGAACCCCT
CCTTTAAGGTCATCAACTTCCGAGGGAACGTCCAGACTCGCCTCAGGAAA
CTCGACGAGGACGTCGTCGATGCCACCCTTCTGGCGTACGCTGGGCTCAA
GCGACTGGACTTGGCGCACGTGGCCACCTCTGTGCTGGACCAAGACGTGC
GTCTTCACGGGATGATATGGGATGGGATAGAATAGCCACCCTTCTGGCGT
ACGCTGGGCTCAAGCGACTGGACTTGGCGCACGTGGCCACCTCTGTGCTG
GACCAAGACGTGCGTCTTCACGGGATGATATGGGATGGGATAGAATAG
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