mRNA_H-elongata_contig15954.3838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15954.3838.1
Unique NamemRNA_H-elongata_contig15954.3838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15954.3838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15954contigH-elongata_contig15954:313..5879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size264
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15954.3838.1prot_H-elongata_contig15954.3838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15954 313..5879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.31614-CDS-H-elongata_contig15954:312..3641622929938.31614-CDS-H-elongata_contig15954:312..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 313..364 +
1691679215.356439-CDS-H-elongata_contig15954:312..3641691679215.356439-CDS-H-elongata_contig15954:312..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 313..364 +
1622929938.3364542-CDS-H-elongata_contig15954:2398..24581622929938.3364542-CDS-H-elongata_contig15954:2398..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 2399..2458 +
1691679215.364662-CDS-H-elongata_contig15954:2398..24581691679215.364662-CDS-H-elongata_contig15954:2398..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 2399..2458 +
1622929938.3502495-CDS-H-elongata_contig15954:4092..41461622929938.3502495-CDS-H-elongata_contig15954:4092..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 4093..4146 +
1691679215.3773768-CDS-H-elongata_contig15954:4092..41461691679215.3773768-CDS-H-elongata_contig15954:4092..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 4093..4146 +
1622929938.3631275-CDS-H-elongata_contig15954:5253..53071622929938.3631275-CDS-H-elongata_contig15954:5253..5307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 5254..5307 +
1691679215.3922846-CDS-H-elongata_contig15954:5253..53071691679215.3922846-CDS-H-elongata_contig15954:5253..5307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 5254..5307 +
1622929938.3819032-CDS-H-elongata_contig15954:5835..58791622929938.3819032-CDS-H-elongata_contig15954:5835..5879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 5836..5879 +
1691679215.4044588-CDS-H-elongata_contig15954:5835..58791691679215.4044588-CDS-H-elongata_contig15954:5835..5879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15954 5836..5879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15954.3838.1

>prot_H-elongata_contig15954.3838.1 ID=prot_H-elongata_contig15954.3838.1|Name=mRNA_H-elongata_contig15954.3838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
PTPAPTTPSPTTPPTTVRPTPAPRTPSPTTLPTTVSEWPTPAPTTPSPTP
LPTTVGPTPAPATSSPTPLPTTVGPTPAPTTPSPTTLP
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mRNA from alignment at H-elongata_contig15954:313..5879+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15954.3838.1 ID=mRNA_H-elongata_contig15954.3838.1|Name=mRNA_H-elongata_contig15954.3838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5567bp|location=Sequence derived from alignment at H-elongata_contig15954:313..5879+ (Himanthalia elongata Himel1 dioecious)
CCAACCCCGGCGCCGACCACTCCGTCGCCTACGACTCCGCCGACCACAGT
TCGTGAGTGTTGTTGTATCTTTGGCTGGAGAAATAAAATATATGTCAAGC
AAAGTCGATTGCCACGCGATATAATTGACAGGCGAATGTGGAAATTTGAC
ATATGCCGTCGGAAGCGTGAAGCATACAAGCCTTATGCCTTGGTGTTTTT
ATTGCTTACACCGTCTGGGAGAGTGGAAAAATATCCTGTACGTTTGTGTA
TGTACAATGGAATCGGTAAACTATATCTATCCACCTCTGCAGTGATGCAA
TCTACCCGTCTCATGTAATTTGACTGATTTTTGTCATGAATTCAGGATAG
ACGTTGTCACCTACGACTCTAACAACCACCAGCTGGGCTTACTGTTGCGA
GAATGAATGGAGCGACACTGTAGCAACGCTGTAGTGTTCTTCATTGCTAA
TGATGAGAAAGCGTGATAAAGGATGCCCGAGTCAATAACACCGAGAACAA
GAGGAGACTGTTATGTCACGATTTTCCGTACTATCGCGTGCGCAGAGCCA
ATGTCACCATCGACTACTCCGTCACCTACGACTTCGCCGACCACCGTTGG
TAAGTGTTGCCGTATCTCTGACTGAAGAAGCAAAACATATGTAAAGACAA
ATATATATTCACATGCTAGAATGGACACCTTGTCCAATGTGGGACATTGA
CATTCTACCCCGGAATCACGAGGCCTGCACCCGTTATGCCTTGATAGTGT
TATATTTCATGTGTGCGCTTGATGTATTTACTGGATACACGCCTTGAAGA
ATAGAAAAAACGCCCTGTATGTTTATGTGTATATATCCATCGTTAAAATA
TAGTCATTGGATAATAAAGTGATGGGATCTACTCGTGTTACCTTATTTGA
TGATCTTTTTCTTGCATTAAGAGTAGATCTCGTCGGCTACGATCCTACCA
ACCCCCAGGTGGGTGTATTGTGGTGAAAATAAATGGAGTAACAATGTTAG
AACGTCGTAGTTGTCTTAATTTCTAATGACGATAAGATCTGATAAAGGAT
GTCCGATGTCCTAACACGGAGGACAAGGTGAGATAGTTATGTCGCGATTT
TCCGCCCCCTATGTCGTGCGAGGGCTAGATTTCATATACGCTTGGTGTTT
TTATTGCATACATCGTCTGGCAGAGTGGAACAAACACCCTGTATGTTTGT
GTGTGCACAAAAGCAAAAAAAACTAAACAGTAGTCCTATGACTATAGAGT
GATGATATTGTCCGGTTTCATGTAACTTGATGGATTGTTTCTTACATTAA
GGATAGACGCCGTCACCAACACCTTCAGCAACCACCAGGCGGGTGTATTG
TGACGAACAGAAATGAAGTGGCATTGTTAGAACGCCATATTTCTCTTAAT
CGCTAATGGTTATTAGACCTGATAAAGGATGTCCGATGTAACAACACCGA
GGACAAGGTAAGAAGACTGTTATGTCACGAGTTGCCGTACTATCGCGTGC
GCAGGGCCAACCCCGGCGCCGGCAACCTCGTCGTCTACAATTCTGCCGAC
CACCGTTGGTGAGTGTTTACGTATATCTGATAGAAGAGATAAGATGTATG
CCATGAAACATATATATTCATGCGCTAGAATGGACACCTTGGCGGTGGTG
GGACATTGGCATTCCACACCGGAAGTACGCGGCCTACGCCCCCTATATCG
TGCGAGGGTTAGTTTTACGTACGGATGGTGTTTTTATTGCATACGTCGTC
TGGCAGAGTGGAAAAAACCCCCTGTATGTTTGTGTGTGCACAATAGCAAA
AAAATAAAACCGTAGTCCTATGACTATAGAGTGATGATATTGTCCGGTTT
AATGTAATTTGATTGATTATTTCTTACATTAAGGATAGACGCCGTCGCCA
CTATCTTTAGGGACCACCAGGCGGGTGTATTGTGACCAACAGAAATGTCG
TGGCATTGTCAGAACGCCGTATTTCTCTTAATTGCTAATGTTGGTAAGAA
CTGATAAAAGATGTCCGATGTAACAACACCGAGGACAAGGTAAGAAGACT
GTTATGTCACGATTTGTCGTACTATCGCGTGCGCAGGGCCAACCCCGGCG
CCGAGAACCCCGTCGCCTACTACTTTGCCGACCACCGTTAGTGAGTGTTT
ACGTATATCTGATAGAAGATATAAGATGTATGCCATGAAACATATATATA
TACATGCACTAGAACGGACACCTTGTGGGTGGTGGGACATTGGCATTCCA
CACCGGAAGTACGCGGCCTACGCCCCCTATATCGTGCGAGGGTTAGTTTT
ACGTACGGTTGGTGTTTTTATTGCATACGTCGTGTGGCAGAGTGGAAAAA
ACCCCCTGTATGTTTCTTTGTGCACAATAGCAAAAAAATAAAACAGTAGT
CCTATGACTATAGAGTGATGATATCGTCCGGTTTCATGTAATTTGATTGA
TCGTTTCTTACATTATGGATAGACGCCGTCGCCAACACCTTTAGCAACCA
CCAGGCGGGTGTAATGTTACAAAGAGAAATGTCATTGCAATGTTAGAACG
CCGCATTTCTCTTAATTGCTAATGGTGGTAAAACCTGATAAACGATGTCC
AATGTAACAACACCGAGGACAAGGTAAAAAGACTGTTATGTCACGAATTG
TCGTACTATCGCGTGCGCAGGGCCAACCCCGGCGCCGAGAACCCCGTCGC
CTACTACTTTGCCGACCACCGTTGGTGAATGTTTTCGTAAATATGATAAA
AGAAAGAAGATGTATGCAATGAAACATATAAAGTCATGCGCTAGAACGGA
CACCGTGTTGGTGGTGGGACATTGGCATTCCGCGCCGGAAGTACGTGACC
TACGCCACCTATATCGTGCGAGGGCTAGATTTCATGTACGCTTGGTGTTT
TTATTGCATACAACGGCTGGCAGAATGGAAAAAACGCAATGTATGTTTGT
GTGTGAACAATAGCAGAAAAAAGAACAGTAGTTCTATGACTATAGAGTGA
TGATATTGTCCGGTGTGATGTAATTTGATTGATTGTTTCATACTTTAAGA
ATAGACGCCGTCGCCAACACCTTCAGCAACCACCAGGCGGGTGTATTGTG
GCGAACACAAGTGAGACCTGATAAAGGATGCCAATGTAACAACACCGAGG
ACAAGGTAAGAAGACTGTTATGTCACGAGTTGTCGTACTATCGCGTGCGC
AGTGCCAATCCCGGCGCCGACAACCCCGTCGCCTACAACTCTGCCGACCA
CCGTTGGTGAGTGTTTACGTATATCTAATAGAAGAGATAAGATGTATGCC
ATGAAACATTTATATTCATGCACTAGAACGGACACCTTGTGGGTGCTGGG
ACATTGGCATTCCACACCGGAAGTACGCGGCCCCTGCCCCCTATATCGTG
CGAGGGTTAGTTTTACGTACGGTTGGTGTTTTTATTGCATACGTCGTGTG
GCAGAGTGGAAAAAACCCTGTATGTTTGTGTGTGCACAATAGCAAAAAAA
TAAAACAGTAGTCCTATGACTATAGAGTGATGATATTGTCCGGTTTCATG
TAATTTGATTGATCGTTTCTTATATTAAGGATAGACACCGTCGCCACTAC
CTTTAGCAACCACCAGGCGGGTGTATTGTGACCAATAGAAATGTCGCGGC
ATTGTCAGAACGCCGTATTTCTCTTAATTGCTAATGTTGGTAAGATCTGA
TAAAAGATGTCCGATGTAGCAACATTGAGGACAAGGTAAGAAGACTGTTA
TCACGAGTTGTCGTACTATCGCGTGCGCAGGGCCAACCCCGGCGCCGACA
ACCCCGTCGCCTACTCCTTTGCCTACCACCGTTGGTGAGTGTTTTCGTAA
ATATGATAAAAGAAAGAAGATGTATGCCATGAAACATATATATTTATGCG
CTAGAATGGACACCTTGTTGTTGGTGGGGCATTGGCATTCGACACCGGAA
GTACGCGGCCTACACCCCCTATGTCGTGCGAGGGTTAGATTGTATGTACG
CTTCGTGTTTTGATTACATACATCGTCTGGCAGAGTGGAAAACCCACCCT
GTATGTTTGTGGGGGCACAATAGCAAAAAAATGAAACAGTAGTCCTATGA
CTATAGAGTGATTATATTGTTCGGTTTCATGTAATTTGATTGATTGTTTC
TTACGTTAAAGATAGACGCGTTCGCCACTACCTTTAGCAACCACCAGGCT
GGAGTATGACGAACATAATTGTTGTGGCATTGTTAGAACGCCGTATTTCT
CTTAATTGCTAATGGTAATGAAACCTGATAAACGATGTCCAATGTAACAA
CACCGAGGACAAGGTAAGAAGACTGTTATGTCACGAGTTGTCGTGCTATC
GCGTGCGCAGGGCCAACCCCGGTACCGGCAACCTCGTCACTTACTCCTCT
GCCCACCACCGTTGGTGAGTGTTTTCGTATATCTGATAGAAGAGATAAGA
TGTATGTCATGAAACATATATAGTCATGCGCTAGAATAAACATGATGGCG
GTGGTGGGATATTGGCATTCCACGCCGGAATTACGCAGCCTATGCCTCTA
TGTCGTGCGAGGGCTAGATTTCGTGTGCGCTTGGTGTTTTTATTGCATAC
GTCGTCTGGCAGAGTGAAAACAAACCCCTGAATGTTTGTGTGTGCGCAAT
AGCAAAAAATGAAACAGTAGTCCTATGACTATAGAGTGATGATATTGTTC
GGTTTCATATAATTTGATTGATCGTTTCTTACGTTAAAGATAGACGCGTT
CGCCAACACCTTTAGCAGCCACCACGCGGGAGTATTGTGACGAACATAAA
TGTCATTGCATTGTTAGAACGCCGTATTTCTCTTAATTGCTAATGGTGAT
GAGACCTGATAAAGGATGTCTGATGTAACAACACCGAAGACAAGGTAAGA
AGACTGTTATGTCACGAGTTGTCGTGCTATCGCTTGCGCAGGGCCAACCC
CGGCGCCGGCAACCTCGTCACCTACTCCTCTGCCCACCACCGTTGGTGAG
TGTTTTCGTATATCTGATAGAAGAGATAAGATGTATGCCATGAAACATAT
ATAGTCATCCGCCAGAATAGACATGTTGGCGGTGATGGGACATTGGCATT
CCACGCCGGAATTACGCGGCCTATGCCTCTATGTCGTGCGAGGGCTAGAT
TTTGTGTGCGCTTGGTGTTTTTATTGCATACGTCGTCTGGCAGAGTGGAA
AAAAAACCCTGAATATTTCTGTGTGCACAATAGCAAAAAAATAAAACAGT
AGTCCTATGACTATAGAGTGATGATATTGTCCGGTTTCATGTAATTTGAT
TGATCGTTTCTTACATTAAGGATAGACGCCGTCGCCAACACCTTTAGCAA
CCACCAGGCGGGTGTAATGTGACAAACAGAAATGTCATTGCATTGTTAGA
ACGCCGTATTTCTCTTAATTGCTAATGGTGGTAAGATCTGATAAAAGATG
TCCGATGTAACAACACCGAGGATAAGGTAAGAAGATTGTTATGTCACGAG
GTGTCGTACTATCGCGTGCGCAGGGCCAACCCCAGCGCCGACGACCCCGT
CGCCTACTACTTTGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig15954:313..5879+

>mRNA_H-elongata_contig15954.3838.1 ID=mRNA_H-elongata_contig15954.3838.1|Name=mRNA_H-elongata_contig15954.3838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig15954:313..5879+ (Himanthalia elongata Himel1 dioecious)
CCAACCCCGGCGCCGACCACTCCGTCGCCTACGACTCCGCCGACCACAGT
TCCCAACCCCGGCGCCGACCACTCCGTCGCCTACGACTCCGCCGACCACA
GTTCGGCCAACCCCGGCGCCGAGAACCCCGTCGCCTACTACTTTGCCGAC
CACCGTTAGTGAGTGGCCAACCCCGGCGCCGAGAACCCCGTCGCCTACTA
CTTTGCCGACCACCGTTAGTGAGTGGCCAACCCCGGCGCCGACAACCCCG
TCGCCTACTCCTTTGCCTACCACCGTTGGGCCAACCCCGGCGCCGACAAC
CCCGTCGCCTACTCCTTTGCCTACCACCGTTGGGCCAACCCCGGCGCCGG
CAACCTCGTCACCTACTCCTCTGCCCACCACCGTTGGGCCAACCCCGGCG
CCGGCAACCTCGTCACCTACTCCTCTGCCCACCACCGTTGGGCCAACCCC
AGCGCCGACGACCCCGTCGCCTACTACTTTGCCGGGCCAACCCCAGCGCC
GACGACCCCGTCGCCTACTACTTTGCCG
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