mRNA_H-elongata_contig15943.3833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15943.3833.1
Unique NamemRNA_H-elongata_contig15943.3833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15943.3833.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.570e-20
Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    1 LLGGARDPECHVSASACGRDDGRDALALSSMKGALSIDWSSGSTSRSNAAAYADATAAYERETFAEAFLPPPAGSAS 231
            LL  ARDP CH SA+ACGRDDGRDALALSSM GALSIDW+   TSR++A AY D   A  RE+ A  F PPPAG AS
Sbjct:  251 LLSAARDPTCHASAAACGRDDGRDALALSSMSGALSIDWALMPTSRTSAEAYVDPAVALGRESPASDFFPPPAGDAS 327
[Close]
BLAST of mRNA_H-elongata_contig15943.3833.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.140e-20
Identity = 57/103 (55.34%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    1 LLGGARDPECHVSASACGRDDGRDALALSSMKGALSIDWSSGSTSRSNAAAYADATAAYERETFAEAFLPPPAGSASTTRAFCSPAEGGGEVLKGAAPSRNGC 309
            LL  ARDP CH SA+ACGRDDGRDALALSSM GALSIDW+   TSR++  A  D   A  RE  A  F PPPAG AS    F  P+       +G  PSR  C
Sbjct:  273 LLSAARDPTCHASAAACGRDDGRDALALSSMSGALSIDWALMPTSRTSVEACMDPAVALGREGLASDFFPPPAGDASPVVPFSGPSG-----PRGTPPSRAAC 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15943.3833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK37_9PHAE1.570e-2067.53Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LN78_ECTSI2.140e-2055.34Tyrosine kinase specific for activated (GTP-bound)... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15943contigH-elongata_contig15943:2321..3226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog2880.D8LN78
KEGG koko:K17535
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.7860012-CDS-H-elongata_contig15943:2322..25901622929937.7860012-CDS-H-elongata_contig15943:2322..2590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15943 2323..2590 -
1691679215.1899235-CDS-H-elongata_contig15943:2322..25901691679215.1899235-CDS-H-elongata_contig15943:2322..2590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15943 2323..2590 -
1622929937.841116-CDS-H-elongata_contig15943:3170..32261622929937.841116-CDS-H-elongata_contig15943:3170..3226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15943 3171..3226 -
1691679215.199377-CDS-H-elongata_contig15943:3170..32261691679215.199377-CDS-H-elongata_contig15943:3170..3226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15943 3171..3226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15943.3833.1prot_H-elongata_contig15943.3833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15943 2323..3226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15943.3833.1

>prot_H-elongata_contig15943.3833.1 ID=prot_H-elongata_contig15943.3833.1|Name=mRNA_H-elongata_contig15943.3833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
LLGGARDPECHVSASACGRDDGRDALALSSMKGALSIDWSSGSTSRSNAA
AYADATAAYERETFAEAFLPPPAGSASTTRAFCSPAEGGGEVLKGAAPSR
NGCYLKPP
back to top

mRNA from alignment at H-elongata_contig15943:2321..3226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15943.3833.1 ID=mRNA_H-elongata_contig15943.3833.1|Name=mRNA_H-elongata_contig15943.3833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at H-elongata_contig15943:2321..3226- (Himanthalia elongata Himel1 dioecious)
CTCCTTGGTGGAGCACGGGACCCTGAGTGCCACGTCAGCGCGTCCGCTTG
CGGAAGGTGTGATCCCGAGCTGCAGAGCTCTGCCTAGCTGTCCACGGCAG
GCACGCTAATTTAGTGATCTCTGTGTACACTAGAGAGGTTATGTCTCTGT
CTTTTGTGTATTTGTGTCATTTTGCGTGTGTTTGTGTGAGTATGTGTGTC
CCCGTTATGTTTTGTGTCCTTGTGTATCCTATGTGTTTGGAGCATCGCGC
CCGCAAACTCTAAAATATGTATTCTTAAGGAAAGAGAGTTCGAAATCTGG
ATCGGGGTCAAACGATGAAAGTTTTGGTGGTTGAAGAGACAGAACCCGTG
CCAAGTAGAACCATTGATATATCAATCGATCCATCCATCGATCGCTCCCG
CTATCCCCTTCTGTTGGTCAGTCGCGTGTGGCCATCGGCCGCATCTGCCC
GTCGGTATTGACGCCTCCAAAACACTGGATGTGCTTTTTTTGTGCAGTAA
CGATAGCTTAATCATTAATTAATCCTTACTCTGCAGTAGCATTCATTACC
CCGATACTACTTATATTAAGGCATGCGCGCTCCTGATATCCCTGACCCCT
TCCCCACCACCCCCCACCCTATGGGATTTGCGCCAGGGACGACGGGCGAG
ACGCGCTCGCCCTGTCGTCCATGAAAGGTGCGCTCTCGATAGACTGGTCC
TCGGGTTCGACGTCGAGATCAAACGCTGCCGCCTATGCCGACGCCACCGC
AGCGTACGAGCGGGAAACCTTCGCCGAGGCGTTTTTACCGCCTCCCGCTG
GAAGCGCGTCCACCACGCGTGCGTTCTGCTCACCTGCTGAGGGTGGCGGC
GAGGTCCTCAAGGGCGCCGCTCCTTCTCGAAATGGATGCTATTTGAAACC
TCCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15943:2321..3226-

>mRNA_H-elongata_contig15943.3833.1 ID=mRNA_H-elongata_contig15943.3833.1|Name=mRNA_H-elongata_contig15943.3833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig15943:2321..3226- (Himanthalia elongata Himel1 dioecious)
CTCCTTGGTGGAGCACGGGACCCTGAGTGCCACGTCAGCGCGTCCGCTTG
CGGAAGCTCCTTGGTGGAGCACGGGACCCTGAGTGCCACGTCAGCGCGTC
CGCTTGCGGAAGGGACGACGGGCGAGACGCGCTCGCCCTGTCGTCCATGA
AAGGTGCGCTCTCGATAGACTGGTCCTCGGGTTCGACGTCGAGATCAAAC
GCTGCCGCCTATGCCGACGCCACCGCAGCGTACGAGCGGGAAACCTTCGC
CGAGGCGTTTTTACCGCCTCCCGCTGGAAGCGCGTCCACCACGCGTGCGT
TCTGCTCACCTGCTGAGGGTGGCGGCGAGGTCCTCAAGGGCGCCGCTCCT
TCTCGAAATGGATGCTATTTGAAACCTCCAGGACGACGGGCGAGACGCGC
TCGCCCTGTCGTCCATGAAAGGTGCGCTCTCGATAGACTGGTCCTCGGGT
TCGACGTCGAGATCAAACGCTGCCGCCTATGCCGACGCCACCGCAGCGTA
CGAGCGGGAAACCTTCGCCGAGGCGTTTTTACCGCCTCCCGCTGGAAGCG
CGTCCACCACGCGTGCGTTCTGCTCACCTGCTGAGGGTGGCGGCGAGGTC
CTCAAGGGCGCCGCTCCTTCTCGAAATGGATGCTATTTGAAACCTCCA
back to top