mRNA_H-elongata_contig159361.3828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159361.3828.1
Unique NamemRNA_H-elongata_contig159361.3828.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: D7FR39_ECTSI (Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR39_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.120e-42
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1
Query:    1 LPRYLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQG 264
            + R+LEQERTIILAVVP+NQDVA VDILERAK VDPEGDRTIGVLTKPDLIGPGNE+E AAVLKN+RKPLKLGYVMVKCRSQRDI+QG
Sbjct:  206 IQRFLEQERTIILAVVPANQDVAPVDILERAKMVDPEGDRTIGVLTKPDLIGPGNEDEAAAVLKNVRKPLKLGYVMVKCRSQRDIDQG 293          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: A0A836CJ76_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ76_9STRA)

HSP 1 Score: 149 bits (375), Expect = 6.880e-40
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 1
Query:    7 RYLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQG 264
            RYL QERTIILAVVP+NQDVATVDILERAK VDPEGDRTIGVLTKPDLIGPGNE+E  AVL+NIRKPLKLGYVM+KCRSQ DI  G
Sbjct:  180 RYLIQERTIILAVVPANQDVATVDILERAKRVDPEGDRTIGVLTKPDLIGPGNEDEVVAVLRNIRKPLKLGYVMLKCRSQADINAG 265          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: A0A7S2D251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D251_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.510e-39
Identity = 66/85 (77.65%), Postives = 77/85 (90.59%), Query Frame = 1
Query:   10 YLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQG 264
            YL QERTIILAVVP+NQD+ATVDILERA++VDP G RT+GVLTK DLIGPG+E+E  AVL+N RKP+KLGYVMVKCRSQ+DI+ G
Sbjct:   28 YLSQERTIILAVVPANQDIATVDILERARSVDPNGLRTLGVLTKADLIGPGSEDEVMAVLRNERKPIKLGYVMVKCRSQQDIDNG 112          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: F0YHI1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHI1_AURAN)

HSP 1 Score: 139 bits (350), Expect = 2.110e-36
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 LPRYLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQG 264
            +  YL Q+RTIILAV+P+NQD+ATVDILERA+ VDP G+RT+GVLTKPDLIGPGNEEE AAVLKNIRKPLKLGYVMVK RSQ  I  G
Sbjct:  167 IDEYLRQDRTIILAVIPANQDIATVDILERARLVDPTGERTLGVLTKPDLIGPGNEEEVAAVLKNIRKPLKLGYVMVKNRSQAQIRNG 254          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: F0YGN9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN9_AURAN)

HSP 1 Score: 139 bits (349), Expect = 3.030e-36
Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 1
Query:   10 YLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQG 264
            YL QERTIILAV+PSNQD+AT+DILERA+TVDP G+RTIGVLTKPDLIGPGNEEE  AVL N+RKPL+LGY+MVK RSQ  ++QG
Sbjct:  212 YLRQERTIILAVIPSNQDIATIDILERAQTVDPGGERTIGVLTKPDLIGPGNEEEVMAVLNNLRKPLRLGYIMVKNRSQAQVKQG 296          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: F0YCI2_AURAN (Dynamin-type G domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCI2_AURAN)

HSP 1 Score: 131 bits (330), Expect = 7.240e-36
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 1
Query:   10 YLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQGKLST 276
            YL+QERTI+LA+VPSNQDVATVDILERA TVDP G+RTIGVLTKPDLIG G E+E  AVLKN RKPLKLGY+MVK RS   ++QG +++
Sbjct:  172 YLKQERTIVLAIVPSNQDVATVDILERALTVDPTGERTIGVLTKPDLIGEGAEDEVVAVLKNERKPLKLGYIMVKNRSAMQLKQGAINS 260          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: A0A7S3Y691_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y691_HETAK)

HSP 1 Score: 130 bits (326), Expect = 7.550e-36
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 LPRYLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQGKLS 273
            +  +L QERT+ILAVVP+NQD+ATVDILERA  VDPEG RTIGVLTKPDL+G GNE E  AV KN RKPL+LGYVMV+CR+Q+++ +G  S
Sbjct:   65 IEHFLRQERTVILAVVPANQDIATVDILERAAEVDPEGRRTIGVLTKPDLVGAGNEGEVLAVAKNERKPLRLGYVMVRCRNQKELNEGVTS 155          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: A0A7S2WV62_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV62_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.380e-35
Identity = 67/85 (78.82%), Postives = 76/85 (89.41%), Query Frame = 1
Query:   10 YLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQG 264
            YL QERTIILAV+P+NQD+ATVDILERA TVDP G RTIGVLTKPDLIGPGNE+E  AVL N+RKPLKLGYVMVK RSQ+ +++G
Sbjct:  164 YLSQERTIILAVIPANQDIATVDILERASTVDPNGVRTIGVLTKPDLIGPGNEDEVLAVLHNVRKPLKLGYVMVKNRSQKQLQEG 248          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: A0A8J2SYS0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYS0_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.910e-35
Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   10 YLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQG 264
            YLE++RTIILA++P+NQD+AT+DILERA+ VDP G+RTIGVLTKPDLIGPGNE+E  AVL+NIRKPLKLG+VMVK RSQ  +E+G
Sbjct:  167 YLEEDRTIILAIIPANQDIATIDILERARIVDPAGERTIGVLTKPDLIGPGNEQEVVAVLRNIRKPLKLGFVMVKNRSQAQVEEG 251          
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Match: A0A7S3Y6A1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6A1_HETAK)

HSP 1 Score: 130 bits (326), Expect = 1.110e-34
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 LPRYLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDLIGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQGKLS 273
            +  +L QERT+ILAVVP+NQD+ATVDILERA  VDPEG RTIGVLTKPDL+G GNE E  AV KN RKPL+LGYVMV+CR+Q+++ +G  S
Sbjct:  182 IEHFLRQERTVILAVVPANQDIATVDILERAAEVDPEGRRTIGVLTKPDLVGAGNEGEVLAVAKNERKPLRLGYVMVRCRNQKELNEGVTS 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159361.3828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR39_ECTSI1.120e-4288.64Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectoca... [more]
A0A836CJ76_9STRA6.880e-4087.21P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2D251_9STRA3.510e-3977.65Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YHI1_AURAN2.110e-3678.41Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YGN9_AURAN3.030e-3678.82Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YCI2_AURAN7.240e-3674.16Dynamin-type G domain-containing protein (Fragment... [more]
A0A7S3Y691_HETAK7.550e-3669.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WV62_9STRA1.380e-3578.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2SYS0_9STRA1.910e-3575.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3Y6A1_HETAK1.110e-3469.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159361contigH-elongata_contig159361:336..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.2e-36
Seed eggNOG ortholog2880.D7FR39
KEGG koko:K20291
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.3260348-CDS-H-elongata_contig159361:335..4341622929937.3260348-CDS-H-elongata_contig159361:335..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159361 336..434 +
1691679214.9922223-CDS-H-elongata_contig159361:335..4341691679214.9922223-CDS-H-elongata_contig159361:335..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159361 336..434 +
1622929937.3363664-CDS-H-elongata_contig159361:1054..12311622929937.3363664-CDS-H-elongata_contig159361:1054..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159361 1055..1231 +
1691679215.0020173-CDS-H-elongata_contig159361:1054..12311691679215.0020173-CDS-H-elongata_contig159361:1054..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159361 1055..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159361.3828.1prot_H-elongata_contig159361.3828.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159361 336..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159361.3828.1

>prot_H-elongata_contig159361.3828.1 ID=prot_H-elongata_contig159361.3828.1|Name=mRNA_H-elongata_contig159361.3828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
LPRYLEQERTIILAVVPSNQDVATVDILERAKTVDPEGDRTIGVLTKPDL
IGPGNEEETAAVLKNIRKPLKLGYVMVKCRSQRDIEQGKLST
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mRNA from alignment at H-elongata_contig159361:336..1231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159361.3828.1 ID=mRNA_H-elongata_contig159361.3828.1|Name=mRNA_H-elongata_contig159361.3828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=896bp|location=Sequence derived from alignment at H-elongata_contig159361:336..1231+ (Himanthalia elongata Himel1 dioecious)
CTCCCCAGGTACCTAGAACAAGAGCGTACGATCATTCTCGCAGTGGTGCC GTCCAATCAGGATGTGGCCACCGTTGACATCCTAGAGAGGGCGAAAACGG TAAGGATTGGGTTTTCGGTTGATGACGGCGAACAGGCCTGAAAGACTGGC TTAACGAAAGGCTAGCGGCGAACAGCATGCAACTACCTATCCGTAGCAAC CTATCATGCTCCGTCTTAGTATATTTCCGCGTTTGATTTACGGTTGGTGA CGACGACAAGGCCAGAAATAATGACTTACCGAAAGGCTAGCGGAAAACAC CCATGAATAGGCTATAAGTGTGTTCTAGCGTTAAAATGATTCGTTTTTTT TGTTGAGACGTGGTTGGGTCTTTTCGCAGTCCTTACGAGGTTGACGCTGA ACATTAGTATCTACATCTGAGGTGGCATCGTCAGCGTTGCCGCCGTCACG GTCGTCGCACATATACTGTACTGTCACCATAAGGATGTTGGTGTTCTATA CCGCTCTTGTACATGGTATGGTTGGACCGGTAGCTGGAAAGGGGTCAGGT TGGACCGGGTCCGCAGGTAATCGAGATCTTCATTCTATTTCAAAACGGCT TGGCGGATTTCACTCGTAGCACCGGGGGTTGTTTTGGTGCTGATCATTTT AGCCCGTCATAGCACATAATTATTGATCCAGAGCTCGTCTGTATATCTAT ATAATGGTTGATGGATCAGGTCGACCCGGAGGGCGACAGAACAATCGGGG TGTTGACCAAACCGGATCTGATTGGTCCGGGCAACGAGGAGGAGACCGCG GCCGTCCTCAAGAACATCCGAAAACCGCTCAAGCTAGGATACGTTATGGT GAAGTGTCGCAGCCAGAGGGACATCGAACAAGGCAAGTTGTCAACC
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Coding sequence (CDS) from alignment at H-elongata_contig159361:336..1231+

>mRNA_H-elongata_contig159361.3828.1 ID=mRNA_H-elongata_contig159361.3828.1|Name=mRNA_H-elongata_contig159361.3828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig159361:336..1231+ (Himanthalia elongata Himel1 dioecious)
CTCCCCAGGTACCTAGAACAAGAGCGTACGATCATTCTCGCAGTGGTGCC
GTCCAATCAGGATGTGGCCACCGTTGACATCCTAGAGAGGGCGAAAACGC
TCCCCAGGTACCTAGAACAAGAGCGTACGATCATTCTCGCAGTGGTGCCG
TCCAATCAGGATGTGGCCACCGTTGACATCCTAGAGAGGGCGAAAACGGT
CGACCCGGAGGGCGACAGAACAATCGGGGTGTTGACCAAACCGGATCTGA
TTGGTCCGGGCAACGAGGAGGAGACCGCGGCCGTCCTCAAGAACATCCGA
AAACCGCTCAAGCTAGGATACGTTATGGTGAAGTGTCGCAGCCAGAGGGA
CATCGAACAAGGCAAGTTGTCAACCGTCGACCCGGAGGGCGACAGAACAA
TCGGGGTGTTGACCAAACCGGATCTGATTGGTCCGGGCAACGAGGAGGAG
ACCGCGGCCGTCCTCAAGAACATCCGAAAACCGCTCAAGCTAGGATACGT
TATGGTGAAGTGTCGCAGCCAGAGGGACATCGAACAAGGCAAGTTGTCAA
CC
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