mRNA_H-elongata_contig159333.3826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159333.3826.1
Unique NamemRNA_H-elongata_contig159333.3826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159333.3826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159333contigH-elongata_contig159333:663..788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_002340.1
Exons1
Model size126
Cds size123
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.2427456-CDS-H-elongata_contig159333:662..7851622929937.2427456-CDS-H-elongata_contig159333:662..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159333 663..785 -
1691679214.9634905-CDS-H-elongata_contig159333:662..7851691679214.9634905-CDS-H-elongata_contig159333:662..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159333 663..785 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.2531462-UTR-H-elongata_contig159333:785..7881622929937.2531462-UTR-H-elongata_contig159333:785..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159333 786..788 -
1691679214.9714565-UTR-H-elongata_contig159333:785..7881691679214.9714565-UTR-H-elongata_contig159333:785..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159333 786..788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159333.3826.1prot_H-elongata_contig159333.3826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159333 663..785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159333.3826.1

>prot_H-elongata_contig159333.3826.1 ID=prot_H-elongata_contig159333.3826.1|Name=mRNA_H-elongata_contig159333.3826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MAVSATFATGFARWFERLEDQEAGYADFAGFLVRVLDQMP*
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mRNA from alignment at H-elongata_contig159333:663..788-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159333.3826.1 ID=mRNA_H-elongata_contig159333.3826.1|Name=mRNA_H-elongata_contig159333.3826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig159333:663..788- (Himanthalia elongata Himel1 dioecious)
GGGATGGCGGTGAGCGCTACCTTCGCGACGGGCTTCGCGCGATGGTTCGA
GCGACTGGAGGATCAGGAGGCGGGATACGCGGATTTCGCGGGGTTCTTGG
TTCGTGTTTTGGATCAGATGCCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig159333:663..788-

>mRNA_H-elongata_contig159333.3826.1 ID=mRNA_H-elongata_contig159333.3826.1|Name=mRNA_H-elongata_contig159333.3826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig159333:663..788- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGAGCGCTACCTTCGCGACGGGCTTCGCGCGATGGTTCGAGCG
ACTGGAGGATCAGGAGGCGGGATACGCGGATTTCGCGGGGTTCTTGGTTC
GTGTTTTGGATCAGATGCCGTAAATGGCGGTGAGCGCTACCTTCGCGACG
GGCTTCGCGCGATGGTTCGAGCGACTGGAGGATCAGGAGGCGGGATACGC
GGATTTCGCGGGGTTCTTGGTTCGTGTTTTGGATCAGATGCCGTAA
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